Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00799

Experiment: PYE with Tetracycline 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00798 and CCNA_00799 are separated by 172 nucleotidesCCNA_00799 and CCNA_00800 are separated by 123 nucleotides CCNA_00798: CCNA_00798 - ABC transporter, ATP-binding protein cydC, at 861,294 to 862,892 _00798 CCNA_00799: CCNA_00799 - ABC transporter, ATP-binding protein cydD, at 863,065 to 864,705 _00799 CCNA_00800: CCNA_00800 - cytochrome bd-type quinol oxidase, subunit 1 cydA, at 864,829 to 866,391 _00800 Position (kb) 863 864 865Strain fitness (log2 ratio) -2 -1 0 1 2 3at 862.130 kb on + strand, within CCNA_00798at 862.131 kb on + strand, within CCNA_00798at 862.133 kb on - strand, within CCNA_00798at 862.177 kb on - strand, within CCNA_00798at 862.214 kb on - strand, within CCNA_00798at 862.228 kb on - strand, within CCNA_00798at 862.277 kb on - strand, within CCNA_00798at 862.318 kb on + strand, within CCNA_00798at 862.326 kb on - strand, within CCNA_00798at 862.326 kb on - strand, within CCNA_00798at 862.368 kb on + strand, within CCNA_00798at 862.393 kb on + strand, within CCNA_00798at 862.425 kb on + strand, within CCNA_00798at 862.433 kb on - strand, within CCNA_00798at 862.443 kb on + strand, within CCNA_00798at 862.473 kb on + strand, within CCNA_00798at 862.481 kb on - strand, within CCNA_00798at 862.572 kb on - strand, within CCNA_00798at 862.604 kb on + strand, within CCNA_00798at 862.648 kb on + strand, within CCNA_00798at 862.691 kb on - strand, within CCNA_00798at 862.692 kb on - strand, within CCNA_00798at 862.743 kb on + strandat 862.743 kb on + strandat 862.751 kb on - strandat 862.816 kb on + strandat 862.824 kb on + strandat 862.903 kb on + strandat 862.903 kb on - strandat 862.920 kb on - strandat 862.968 kb on + strandat 862.979 kb on + strandat 863.000 kb on + strandat 863.030 kb on - strandat 863.057 kb on - strandat 863.058 kb on - strandat 863.086 kb on - strandat 863.111 kb on - strandat 863.129 kb on + strandat 863.129 kb on + strandat 863.137 kb on - strandat 863.137 kb on - strandat 863.137 kb on - strandat 863.142 kb on - strandat 863.161 kb on + strandat 863.228 kb on + strandat 863.236 kb on - strand, within CCNA_00799at 863.236 kb on - strand, within CCNA_00799at 863.236 kb on - strand, within CCNA_00799at 863.238 kb on + strand, within CCNA_00799at 863.253 kb on - strand, within CCNA_00799at 863.280 kb on + strand, within CCNA_00799at 863.280 kb on + strand, within CCNA_00799at 863.288 kb on - strand, within CCNA_00799at 863.316 kb on - strand, within CCNA_00799at 863.316 kb on - strand, within CCNA_00799at 863.334 kb on - strand, within CCNA_00799at 863.340 kb on + strand, within CCNA_00799at 863.390 kb on - strand, within CCNA_00799at 863.448 kb on + strand, within CCNA_00799at 863.448 kb on + strand, within CCNA_00799at 863.456 kb on - strand, within CCNA_00799at 863.497 kb on + strand, within CCNA_00799at 863.573 kb on + strand, within CCNA_00799at 863.583 kb on + strand, within CCNA_00799at 863.583 kb on + strand, within CCNA_00799at 863.586 kb on - strand, within CCNA_00799at 863.586 kb on - strand, within CCNA_00799at 863.621 kb on - strand, within CCNA_00799at 863.664 kb on - strand, within CCNA_00799at 863.675 kb on - strand, within CCNA_00799at 863.719 kb on - strand, within CCNA_00799at 863.719 kb on - strand, within CCNA_00799at 863.735 kb on + strand, within CCNA_00799at 863.751 kb on - strand, within CCNA_00799at 863.807 kb on + strand, within CCNA_00799at 863.812 kb on + strand, within CCNA_00799at 863.813 kb on + strand, within CCNA_00799at 863.843 kb on - strand, within CCNA_00799at 863.925 kb on - strand, within CCNA_00799at 863.957 kb on + strand, within CCNA_00799at 863.957 kb on + strand, within CCNA_00799at 864.013 kb on + strand, within CCNA_00799at 864.015 kb on - strand, within CCNA_00799at 864.022 kb on + strand, within CCNA_00799at 864.030 kb on - strand, within CCNA_00799at 864.030 kb on - strand, within CCNA_00799at 864.030 kb on - strand, within CCNA_00799at 864.035 kb on - strand, within CCNA_00799at 864.051 kb on + strand, within CCNA_00799at 864.107 kb on - strand, within CCNA_00799at 864.119 kb on + strand, within CCNA_00799at 864.119 kb on + strand, within CCNA_00799at 864.127 kb on - strand, within CCNA_00799at 864.173 kb on - strand, within CCNA_00799at 864.186 kb on + strand, within CCNA_00799at 864.186 kb on + strand, within CCNA_00799at 864.247 kb on + strand, within CCNA_00799at 864.264 kb on - strand, within CCNA_00799at 864.277 kb on - strand, within CCNA_00799at 864.323 kb on + strand, within CCNA_00799at 864.331 kb on - strand, within CCNA_00799at 864.335 kb on - strand, within CCNA_00799at 864.335 kb on - strand, within CCNA_00799at 864.380 kb on + strand, within CCNA_00799at 864.391 kb on + strand, within CCNA_00799at 864.407 kb on + strand, within CCNA_00799at 864.455 kb on + strand, within CCNA_00799at 864.635 kb on + strandat 864.656 kb on - strandat 864.659 kb on + strandat 864.659 kb on + strandat 864.659 kb on + strandat 864.661 kb on - strandat 864.703 kb on + strandat 864.708 kb on + strandat 864.711 kb on - strandat 864.712 kb on + strandat 864.713 kb on + strandat 864.716 kb on - strandat 864.721 kb on - strandat 864.733 kb on - strandat 864.761 kb on + strandat 864.761 kb on + strandat 864.761 kb on + strandat 864.761 kb on + strandat 864.769 kb on - strandat 864.769 kb on - strandat 864.770 kb on - strandat 864.772 kb on + strandat 864.772 kb on + strandat 864.772 kb on + strandat 864.772 kb on + strandat 864.772 kb on + strandat 864.772 kb on + strandat 864.775 kb on - strandat 864.780 kb on - strandat 864.780 kb on - strandat 864.780 kb on - strandat 864.780 kb on - strandat 864.823 kb on - strandat 864.825 kb on + strandat 864.841 kb on + strandat 864.841 kb on + strandat 864.841 kb on + strandat 864.849 kb on - strandat 864.849 kb on - strandat 864.849 kb on - strandat 864.850 kb on - strandat 864.909 kb on - strandat 864.928 kb on - strandat 864.980 kb on + strandat 864.990 kb on + strand, within CCNA_00800at 864.990 kb on + strand, within CCNA_00800at 864.990 kb on + strand, within CCNA_00800at 864.990 kb on + strand, within CCNA_00800at 864.998 kb on - strand, within CCNA_00800at 864.998 kb on - strand, within CCNA_00800at 864.998 kb on - strand, within CCNA_00800at 865.016 kb on + strand, within CCNA_00800at 865.071 kb on - strand, within CCNA_00800at 865.073 kb on + strand, within CCNA_00800at 865.073 kb on + strand, within CCNA_00800at 865.192 kb on - strand, within CCNA_00800at 865.193 kb on - strand, within CCNA_00800at 865.194 kb on + strand, within CCNA_00800at 865.194 kb on + strand, within CCNA_00800at 865.194 kb on + strand, within CCNA_00800at 865.194 kb on + strand, within CCNA_00800at 865.202 kb on - strand, within CCNA_00800at 865.238 kb on + strand, within CCNA_00800at 865.244 kb on - strand, within CCNA_00800at 865.252 kb on + strand, within CCNA_00800at 865.303 kb on + strand, within CCNA_00800at 865.313 kb on - strand, within CCNA_00800at 865.351 kb on + strand, within CCNA_00800at 865.359 kb on - strand, within CCNA_00800at 865.374 kb on + strand, within CCNA_00800at 865.382 kb on - strand, within CCNA_00800at 865.382 kb on - strand, within CCNA_00800at 865.392 kb on + strand, within CCNA_00800at 865.426 kb on + strand, within CCNA_00800at 865.520 kb on + strand, within CCNA_00800at 865.532 kb on + strand, within CCNA_00800at 865.537 kb on + strand, within CCNA_00800at 865.545 kb on - strand, within CCNA_00800at 865.559 kb on - strand, within CCNA_00800at 865.564 kb on - strand, within CCNA_00800at 865.595 kb on + strand, within CCNA_00800at 865.614 kb on + strand, within CCNA_00800at 865.668 kb on + strand, within CCNA_00800at 865.702 kb on + strand, within CCNA_00800

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.0001 mg/ml
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862,130 + CCNA_00798 0.52 +0.3
862,131 + CCNA_00798 0.52 -0.0
862,133 - CCNA_00798 0.52 +0.7
862,177 - CCNA_00798 0.55 -0.4
862,214 - CCNA_00798 0.58 -0.2
862,228 - CCNA_00798 0.58 +0.7
862,277 - CCNA_00798 0.61 -0.4
862,318 + CCNA_00798 0.64 -0.5
862,326 - CCNA_00798 0.65 -0.9
862,326 - CCNA_00798 0.65 -0.0
862,368 + CCNA_00798 0.67 -1.3
862,393 + CCNA_00798 0.69 -0.7
862,425 + CCNA_00798 0.71 -1.0
862,433 - CCNA_00798 0.71 -0.6
862,443 + CCNA_00798 0.72 +0.3
862,473 + CCNA_00798 0.74 -0.2
862,481 - CCNA_00798 0.74 -0.5
862,572 - CCNA_00798 0.80 -1.5
862,604 + CCNA_00798 0.82 -0.9
862,648 + CCNA_00798 0.85 -0.5
862,691 - CCNA_00798 0.87 -0.3
862,692 - CCNA_00798 0.87 -0.9
862,743 + -0.2
862,743 + -0.2
862,751 - +0.3
862,816 + +2.3
862,824 + -0.3
862,903 + +0.9
862,903 - +0.4
862,920 - +0.9
862,968 + +0.7
862,979 + -0.7
863,000 + -0.0
863,030 - +0.3
863,057 - +0.1
863,058 - +0.6
863,086 - +1.4
863,111 - +0.9
863,129 + -0.8
863,129 + -0.8
863,137 - -0.9
863,137 - -0.5
863,137 - -0.8
863,142 - +0.7
863,161 + +1.3
863,228 + -0.0
863,236 - CCNA_00799 0.10 -0.3
863,236 - CCNA_00799 0.10 -0.7
863,236 - CCNA_00799 0.10 -0.4
863,238 + CCNA_00799 0.11 -1.1
863,253 - CCNA_00799 0.11 -0.2
863,280 + CCNA_00799 0.13 +0.5
863,280 + CCNA_00799 0.13 +0.5
863,288 - CCNA_00799 0.14 +0.3
863,316 - CCNA_00799 0.15 -0.4
863,316 - CCNA_00799 0.15 -2.0
863,334 - CCNA_00799 0.16 +2.7
863,340 + CCNA_00799 0.17 -0.3
863,390 - CCNA_00799 0.20 -0.6
863,448 + CCNA_00799 0.23 +1.3
863,448 + CCNA_00799 0.23 -0.0
863,456 - CCNA_00799 0.24 +0.7
863,497 + CCNA_00799 0.26 -0.7
863,573 + CCNA_00799 0.31 -0.3
863,583 + CCNA_00799 0.32 -0.0
863,583 + CCNA_00799 0.32 -1.0
863,586 - CCNA_00799 0.32 +3.3
863,586 - CCNA_00799 0.32 +0.5
863,621 - CCNA_00799 0.34 -1.2
863,664 - CCNA_00799 0.37 -1.0
863,675 - CCNA_00799 0.37 -0.6
863,719 - CCNA_00799 0.40 -0.0
863,719 - CCNA_00799 0.40 +0.3
863,735 + CCNA_00799 0.41 -0.0
863,751 - CCNA_00799 0.42 -1.2
863,807 + CCNA_00799 0.45 +0.3
863,812 + CCNA_00799 0.46 -0.7
863,813 + CCNA_00799 0.46 +0.7
863,843 - CCNA_00799 0.47 -1.0
863,925 - CCNA_00799 0.52 -1.1
863,957 + CCNA_00799 0.54 +0.3
863,957 + CCNA_00799 0.54 -0.9
864,013 + CCNA_00799 0.58 +0.5
864,015 - CCNA_00799 0.58 +1.0
864,022 + CCNA_00799 0.58 -1.1
864,030 - CCNA_00799 0.59 -0.2
864,030 - CCNA_00799 0.59 -0.6
864,030 - CCNA_00799 0.59 +0.3
864,035 - CCNA_00799 0.59 +0.1
864,051 + CCNA_00799 0.60 -1.3
864,107 - CCNA_00799 0.63 -0.9
864,119 + CCNA_00799 0.64 +0.7
864,119 + CCNA_00799 0.64 +0.1
864,127 - CCNA_00799 0.65 -0.0
864,173 - CCNA_00799 0.68 -0.2
864,186 + CCNA_00799 0.68 -0.9
864,186 + CCNA_00799 0.68 -0.5
864,247 + CCNA_00799 0.72 -0.0
864,264 - CCNA_00799 0.73 -0.0
864,277 - CCNA_00799 0.74 +2.1
864,323 + CCNA_00799 0.77 -1.0
864,331 - CCNA_00799 0.77 -2.1
864,335 - CCNA_00799 0.77 -0.0
864,335 - CCNA_00799 0.77 -1.4
864,380 + CCNA_00799 0.80 -0.3
864,391 + CCNA_00799 0.81 +0.3
864,407 + CCNA_00799 0.82 +0.3
864,455 + CCNA_00799 0.85 +1.0
864,635 + +1.6
864,656 - +0.1
864,659 + -1.5
864,659 + +0.2
864,659 + -1.1
864,661 - -1.4
864,703 + -1.1
864,708 + -0.6
864,711 - +0.2
864,712 + -0.0
864,713 + -1.0
864,716 - +0.6
864,721 - +0.6
864,733 - +0.9
864,761 + +0.1
864,761 + -0.3
864,761 + -0.0
864,761 + -0.4
864,769 - -0.8
864,769 - +0.5
864,770 - +0.1
864,772 + -0.6
864,772 + -2.2
864,772 + -1.1
864,772 + -1.2
864,772 + -0.2
864,772 + -0.3
864,775 - +0.3
864,780 - -0.5
864,780 - +1.0
864,780 - -0.5
864,780 - -0.3
864,823 - -0.6
864,825 + -0.4
864,841 + -1.0
864,841 + -0.5
864,841 + -2.0
864,849 - -0.9
864,849 - -1.2
864,849 - -0.2
864,850 - -0.3
864,909 - -1.2
864,928 - +0.7
864,980 + -0.8
864,990 + CCNA_00800 0.10 +0.7
864,990 + CCNA_00800 0.10 -0.5
864,990 + CCNA_00800 0.10 -0.3
864,990 + CCNA_00800 0.10 -1.0
864,998 - CCNA_00800 0.11 -0.0
864,998 - CCNA_00800 0.11 -0.1
864,998 - CCNA_00800 0.11 +1.3
865,016 + CCNA_00800 0.12 +0.9
865,071 - CCNA_00800 0.15 +0.1
865,073 + CCNA_00800 0.16 -0.6
865,073 + CCNA_00800 0.16 +0.5
865,192 - CCNA_00800 0.23 -0.5
865,193 - CCNA_00800 0.23 -1.5
865,194 + CCNA_00800 0.23 +1.0
865,194 + CCNA_00800 0.23 -1.4
865,194 + CCNA_00800 0.23 -0.5
865,194 + CCNA_00800 0.23 +0.3
865,202 - CCNA_00800 0.24 -1.6
865,238 + CCNA_00800 0.26 -1.2
865,244 - CCNA_00800 0.27 +0.5
865,252 + CCNA_00800 0.27 +0.7
865,303 + CCNA_00800 0.30 +1.3
865,313 - CCNA_00800 0.31 +1.7
865,351 + CCNA_00800 0.33 -0.7
865,359 - CCNA_00800 0.34 -0.5
865,374 + CCNA_00800 0.35 -0.6
865,382 - CCNA_00800 0.35 -2.3
865,382 - CCNA_00800 0.35 -0.4
865,392 + CCNA_00800 0.36 -0.7
865,426 + CCNA_00800 0.38 +0.7
865,520 + CCNA_00800 0.44 -1.6
865,532 + CCNA_00800 0.45 -0.2
865,537 + CCNA_00800 0.45 -1.1
865,545 - CCNA_00800 0.46 -0.7
865,559 - CCNA_00800 0.47 -0.3
865,564 - CCNA_00800 0.47 -0.0
865,595 + CCNA_00800 0.49 -1.3
865,614 + CCNA_00800 0.50 -0.5
865,668 + CCNA_00800 0.54 -0.1
865,702 + CCNA_00800 0.56 +1.5

Or see this region's nucleotide sequence