Experiment: PYE with Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00796 and CCNA_03940 are separated by 109 nucleotides CCNA_03940 and CCNA_00798 are separated by 8 nucleotides CCNA_00798 and CCNA_00799 are separated by 172 nucleotides
CCNA_00796: CCNA_00796 - oxygen sensory histidine kinase FixL, at 859,581 to 861,068
_00796
CCNA_03940: CCNA_03940 - hypothetical protein, at 861,178 to 861,285
_03940
CCNA_00798: CCNA_00798 - ABC transporter, ATP-binding protein cydC, at 861,294 to 862,892
_00798
CCNA_00799: CCNA_00799 - ABC transporter, ATP-binding protein cydD, at 863,065 to 864,705
_00799
Position (kb) 861
862
863 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 860.318 kb on - strand, within CCNA_00796 at 860.359 kb on - strand, within CCNA_00796 at 860.474 kb on - strand, within CCNA_00796 at 860.490 kb on + strand, within CCNA_00796 at 860.490 kb on + strand, within CCNA_00796 at 860.629 kb on - strand, within CCNA_00796 at 860.687 kb on - strand, within CCNA_00796 at 860.708 kb on - strand, within CCNA_00796 at 860.756 kb on - strand, within CCNA_00796 at 860.759 kb on + strand, within CCNA_00796 at 860.761 kb on - strand, within CCNA_00796 at 860.797 kb on + strand, within CCNA_00796 at 860.805 kb on - strand, within CCNA_00796 at 860.805 kb on - strand, within CCNA_00796 at 860.805 kb on - strand, within CCNA_00796 at 860.836 kb on - strand, within CCNA_00796 at 860.836 kb on - strand, within CCNA_00796 at 860.841 kb on - strand, within CCNA_00796 at 860.850 kb on + strand, within CCNA_00796 at 860.858 kb on - strand, within CCNA_00796 at 860.870 kb on + strand, within CCNA_00796 at 860.870 kb on + strand, within CCNA_00796 at 860.870 kb on + strand, within CCNA_00796 at 860.876 kb on + strand, within CCNA_00796 at 860.878 kb on - strand, within CCNA_00796 at 860.878 kb on - strand, within CCNA_00796 at 860.878 kb on - strand, within CCNA_00796 at 860.894 kb on - strand, within CCNA_00796 at 860.901 kb on + strand, within CCNA_00796 at 860.901 kb on + strand, within CCNA_00796 at 860.904 kb on - strand, within CCNA_00796 at 860.909 kb on - strand, within CCNA_00796 at 860.909 kb on - strand, within CCNA_00796 at 860.932 kb on - strand at 860.967 kb on - strand at 861.028 kb on + strand at 861.028 kb on + strand at 861.042 kb on + strand at 861.121 kb on - strand at 861.121 kb on - strand at 861.124 kb on + strand at 861.124 kb on + strand at 861.131 kb on - strand at 861.132 kb on - strand at 861.132 kb on - strand at 861.132 kb on - strand at 861.132 kb on - strand at 861.132 kb on - strand at 861.137 kb on + strand at 861.137 kb on + strand at 861.147 kb on + strand at 861.153 kb on + strand at 861.153 kb on + strand at 861.250 kb on - strand, within CCNA_03940 at 861.252 kb on + strand, within CCNA_03940 at 861.260 kb on - strand, within CCNA_03940 at 861.268 kb on - strand, within CCNA_03940 at 861.309 kb on - strand at 861.315 kb on + strand at 861.361 kb on - strand at 861.405 kb on + strand at 861.474 kb on + strand, within CCNA_00798 at 861.482 kb on - strand, within CCNA_00798 at 861.482 kb on - strand, within CCNA_00798 at 861.482 kb on - strand, within CCNA_00798 at 861.505 kb on + strand, within CCNA_00798 at 861.529 kb on + strand, within CCNA_00798 at 861.534 kb on + strand, within CCNA_00798 at 861.539 kb on + strand, within CCNA_00798 at 861.540 kb on + strand, within CCNA_00798 at 861.542 kb on - strand, within CCNA_00798 at 861.602 kb on - strand, within CCNA_00798 at 861.602 kb on - strand, within CCNA_00798 at 861.602 kb on - strand, within CCNA_00798 at 861.616 kb on + strand, within CCNA_00798 at 861.655 kb on + strand, within CCNA_00798 at 861.655 kb on + strand, within CCNA_00798 at 861.655 kb on + strand, within CCNA_00798 at 861.663 kb on - strand, within CCNA_00798 at 861.764 kb on + strand, within CCNA_00798 at 861.764 kb on + strand, within CCNA_00798 at 861.788 kb on + strand, within CCNA_00798 at 861.796 kb on - strand, within CCNA_00798 at 861.796 kb on - strand, within CCNA_00798 at 861.825 kb on + strand, within CCNA_00798 at 861.840 kb on - strand, within CCNA_00798 at 861.841 kb on - strand, within CCNA_00798 at 861.866 kb on + strand, within CCNA_00798 at 861.874 kb on - strand, within CCNA_00798 at 861.874 kb on - strand, within CCNA_00798 at 861.874 kb on - strand, within CCNA_00798 at 861.889 kb on - strand, within CCNA_00798 at 861.889 kb on - strand, within CCNA_00798 at 861.889 kb on - strand, within CCNA_00798 at 861.891 kb on - strand, within CCNA_00798 at 861.891 kb on - strand, within CCNA_00798 at 861.891 kb on - strand, within CCNA_00798 at 861.919 kb on + strand, within CCNA_00798 at 861.919 kb on + strand, within CCNA_00798 at 861.919 kb on + strand, within CCNA_00798 at 861.927 kb on - strand, within CCNA_00798 at 861.941 kb on - strand, within CCNA_00798 at 861.945 kb on + strand, within CCNA_00798 at 861.945 kb on + strand, within CCNA_00798 at 861.951 kb on - strand, within CCNA_00798 at 861.953 kb on - strand, within CCNA_00798 at 862.013 kb on + strand, within CCNA_00798 at 862.013 kb on - strand, within CCNA_00798 at 862.058 kb on - strand, within CCNA_00798 at 862.130 kb on + strand, within CCNA_00798 at 862.131 kb on + strand, within CCNA_00798 at 862.133 kb on - strand, within CCNA_00798 at 862.177 kb on - strand, within CCNA_00798 at 862.214 kb on - strand, within CCNA_00798 at 862.228 kb on - strand, within CCNA_00798 at 862.277 kb on - strand, within CCNA_00798 at 862.318 kb on + strand, within CCNA_00798 at 862.326 kb on - strand, within CCNA_00798 at 862.326 kb on - strand, within CCNA_00798 at 862.368 kb on + strand, within CCNA_00798 at 862.393 kb on + strand, within CCNA_00798 at 862.425 kb on + strand, within CCNA_00798 at 862.433 kb on - strand, within CCNA_00798 at 862.443 kb on + strand, within CCNA_00798 at 862.473 kb on + strand, within CCNA_00798 at 862.481 kb on - strand, within CCNA_00798 at 862.572 kb on - strand, within CCNA_00798 at 862.604 kb on + strand, within CCNA_00798 at 862.648 kb on + strand, within CCNA_00798 at 862.691 kb on - strand, within CCNA_00798 at 862.692 kb on - strand, within CCNA_00798 at 862.743 kb on + strand at 862.743 kb on + strand at 862.751 kb on - strand at 862.816 kb on + strand at 862.824 kb on + strand at 862.903 kb on + strand at 862.903 kb on - strand at 862.920 kb on - strand at 862.968 kb on + strand at 862.979 kb on + strand at 863.000 kb on + strand at 863.030 kb on - strand at 863.057 kb on - strand at 863.058 kb on - strand at 863.086 kb on - strand at 863.111 kb on - strand at 863.129 kb on + strand at 863.129 kb on + strand at 863.137 kb on - strand at 863.137 kb on - strand at 863.137 kb on - strand at 863.142 kb on - strand at 863.161 kb on + strand at 863.228 kb on + strand at 863.236 kb on - strand, within CCNA_00799 at 863.236 kb on - strand, within CCNA_00799 at 863.236 kb on - strand, within CCNA_00799 at 863.238 kb on + strand, within CCNA_00799 at 863.253 kb on - strand, within CCNA_00799 at 863.280 kb on + strand, within CCNA_00799 at 863.280 kb on + strand, within CCNA_00799 at 863.288 kb on - strand, within CCNA_00799 at 863.316 kb on - strand, within CCNA_00799 at 863.316 kb on - strand, within CCNA_00799 at 863.334 kb on - strand, within CCNA_00799 at 863.340 kb on + strand, within CCNA_00799 at 863.390 kb on - strand, within CCNA_00799 at 863.448 kb on + strand, within CCNA_00799 at 863.448 kb on + strand, within CCNA_00799 at 863.456 kb on - strand, within CCNA_00799 at 863.497 kb on + strand, within CCNA_00799 at 863.573 kb on + strand, within CCNA_00799 at 863.583 kb on + strand, within CCNA_00799 at 863.583 kb on + strand, within CCNA_00799 at 863.586 kb on - strand, within CCNA_00799 at 863.586 kb on - strand, within CCNA_00799 at 863.621 kb on - strand, within CCNA_00799 at 863.664 kb on - strand, within CCNA_00799 at 863.675 kb on - strand, within CCNA_00799 at 863.719 kb on - strand, within CCNA_00799 at 863.719 kb on - strand, within CCNA_00799 at 863.735 kb on + strand, within CCNA_00799 at 863.751 kb on - strand, within CCNA_00799 at 863.807 kb on + strand, within CCNA_00799 at 863.812 kb on + strand, within CCNA_00799 at 863.813 kb on + strand, within CCNA_00799 at 863.843 kb on - strand, within CCNA_00799
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.0001 mg/ml remove 860,318 - CCNA_00796 0.50 +0.5 860,359 - CCNA_00796 0.52 -0.5 860,474 - CCNA_00796 0.60 -0.1 860,490 + CCNA_00796 0.61 -1.2 860,490 + CCNA_00796 0.61 -1.0 860,629 - CCNA_00796 0.70 -1.4 860,687 - CCNA_00796 0.74 +1.0 860,708 - CCNA_00796 0.76 -1.1 860,756 - CCNA_00796 0.79 +0.1 860,759 + CCNA_00796 0.79 -2.0 860,761 - CCNA_00796 0.79 -0.9 860,797 + CCNA_00796 0.82 +0.3 860,805 - CCNA_00796 0.82 -1.0 860,805 - CCNA_00796 0.82 -0.2 860,805 - CCNA_00796 0.82 -0.4 860,836 - CCNA_00796 0.84 +0.5 860,836 - CCNA_00796 0.84 +0.7 860,841 - CCNA_00796 0.85 -0.2 860,850 + CCNA_00796 0.85 -0.3 860,858 - CCNA_00796 0.86 -1.2 860,870 + CCNA_00796 0.87 -0.5 860,870 + CCNA_00796 0.87 -1.4 860,870 + CCNA_00796 0.87 -1.5 860,876 + CCNA_00796 0.87 +0.5 860,878 - CCNA_00796 0.87 -0.8 860,878 - CCNA_00796 0.87 -0.8 860,878 - CCNA_00796 0.87 -0.2 860,894 - CCNA_00796 0.88 -1.2 860,901 + CCNA_00796 0.89 -2.2 860,901 + CCNA_00796 0.89 -1.0 860,904 - CCNA_00796 0.89 -0.9 860,909 - CCNA_00796 0.89 +0.5 860,909 - CCNA_00796 0.89 +1.0 860,932 - -1.4 860,967 - -1.0 861,028 + -0.5 861,028 + +0.1 861,042 + -1.0 861,121 - +0.0 861,121 - +0.4 861,124 + +0.5 861,124 + +0.9 861,131 - -1.4 861,132 - -1.4 861,132 - +0.1 861,132 - -0.8 861,132 - +0.6 861,132 - +0.3 861,137 + +0.6 861,137 + +1.3 861,147 + +0.0 861,153 + -0.3 861,153 + +1.7 861,250 - CCNA_03940 0.67 -1.9 861,252 + CCNA_03940 0.69 +0.7 861,260 - CCNA_03940 0.76 +0.5 861,268 - CCNA_03940 0.83 +2.5 861,309 - +0.2 861,315 + +2.7 861,361 - -0.5 861,405 + +2.3 861,474 + CCNA_00798 0.11 -0.0 861,482 - CCNA_00798 0.12 +1.0 861,482 - CCNA_00798 0.12 -0.7 861,482 - CCNA_00798 0.12 +1.3 861,505 + CCNA_00798 0.13 -0.3 861,529 + CCNA_00798 0.15 -0.8 861,534 + CCNA_00798 0.15 +0.3 861,539 + CCNA_00798 0.15 -1.5 861,540 + CCNA_00798 0.15 +0.7 861,542 - CCNA_00798 0.16 +0.7 861,602 - CCNA_00798 0.19 +1.3 861,602 - CCNA_00798 0.19 -0.9 861,602 - CCNA_00798 0.19 -0.3 861,616 + CCNA_00798 0.20 -1.0 861,655 + CCNA_00798 0.23 +1.0 861,655 + CCNA_00798 0.23 +1.3 861,655 + CCNA_00798 0.23 -0.5 861,663 - CCNA_00798 0.23 +1.3 861,764 + CCNA_00798 0.29 -0.5 861,764 + CCNA_00798 0.29 -0.8 861,788 + CCNA_00798 0.31 -0.6 861,796 - CCNA_00798 0.31 -1.0 861,796 - CCNA_00798 0.31 -0.8 861,825 + CCNA_00798 0.33 -1.5 861,840 - CCNA_00798 0.34 +0.1 861,841 - CCNA_00798 0.34 -0.8 861,866 + CCNA_00798 0.36 -0.8 861,874 - CCNA_00798 0.36 -1.1 861,874 - CCNA_00798 0.36 +0.7 861,874 - CCNA_00798 0.36 -1.3 861,889 - CCNA_00798 0.37 -0.0 861,889 - CCNA_00798 0.37 +0.7 861,889 - CCNA_00798 0.37 -0.7 861,891 - CCNA_00798 0.37 -0.1 861,891 - CCNA_00798 0.37 +0.1 861,891 - CCNA_00798 0.37 +1.5 861,919 + CCNA_00798 0.39 -1.0 861,919 + CCNA_00798 0.39 -0.3 861,919 + CCNA_00798 0.39 +0.2 861,927 - CCNA_00798 0.40 +0.6 861,941 - CCNA_00798 0.40 -1.7 861,945 + CCNA_00798 0.41 -1.2 861,945 + CCNA_00798 0.41 -0.2 861,951 - CCNA_00798 0.41 +0.4 861,953 - CCNA_00798 0.41 -0.0 862,013 + CCNA_00798 0.45 +0.3 862,013 - CCNA_00798 0.45 +0.5 862,058 - CCNA_00798 0.48 +0.1 862,130 + CCNA_00798 0.52 +0.3 862,131 + CCNA_00798 0.52 -0.0 862,133 - CCNA_00798 0.52 +0.7 862,177 - CCNA_00798 0.55 -0.4 862,214 - CCNA_00798 0.58 -0.2 862,228 - CCNA_00798 0.58 +0.7 862,277 - CCNA_00798 0.61 -0.4 862,318 + CCNA_00798 0.64 -0.5 862,326 - CCNA_00798 0.65 -0.9 862,326 - CCNA_00798 0.65 -0.0 862,368 + CCNA_00798 0.67 -1.3 862,393 + CCNA_00798 0.69 -0.7 862,425 + CCNA_00798 0.71 -1.0 862,433 - CCNA_00798 0.71 -0.6 862,443 + CCNA_00798 0.72 +0.3 862,473 + CCNA_00798 0.74 -0.2 862,481 - CCNA_00798 0.74 -0.5 862,572 - CCNA_00798 0.80 -1.5 862,604 + CCNA_00798 0.82 -0.9 862,648 + CCNA_00798 0.85 -0.5 862,691 - CCNA_00798 0.87 -0.3 862,692 - CCNA_00798 0.87 -0.9 862,743 + -0.2 862,743 + -0.2 862,751 - +0.3 862,816 + +2.3 862,824 + -0.3 862,903 + +0.9 862,903 - +0.4 862,920 - +0.9 862,968 + +0.7 862,979 + -0.7 863,000 + -0.0 863,030 - +0.3 863,057 - +0.1 863,058 - +0.6 863,086 - +1.4 863,111 - +0.9 863,129 + -0.8 863,129 + -0.8 863,137 - -0.9 863,137 - -0.5 863,137 - -0.8 863,142 - +0.7 863,161 + +1.3 863,228 + -0.0 863,236 - CCNA_00799 0.10 -0.3 863,236 - CCNA_00799 0.10 -0.7 863,236 - CCNA_00799 0.10 -0.4 863,238 + CCNA_00799 0.11 -1.1 863,253 - CCNA_00799 0.11 -0.2 863,280 + CCNA_00799 0.13 +0.5 863,280 + CCNA_00799 0.13 +0.5 863,288 - CCNA_00799 0.14 +0.3 863,316 - CCNA_00799 0.15 -0.4 863,316 - CCNA_00799 0.15 -2.0 863,334 - CCNA_00799 0.16 +2.7 863,340 + CCNA_00799 0.17 -0.3 863,390 - CCNA_00799 0.20 -0.6 863,448 + CCNA_00799 0.23 +1.3 863,448 + CCNA_00799 0.23 -0.0 863,456 - CCNA_00799 0.24 +0.7 863,497 + CCNA_00799 0.26 -0.7 863,573 + CCNA_00799 0.31 -0.3 863,583 + CCNA_00799 0.32 -0.0 863,583 + CCNA_00799 0.32 -1.0 863,586 - CCNA_00799 0.32 +3.3 863,586 - CCNA_00799 0.32 +0.5 863,621 - CCNA_00799 0.34 -1.2 863,664 - CCNA_00799 0.37 -1.0 863,675 - CCNA_00799 0.37 -0.6 863,719 - CCNA_00799 0.40 -0.0 863,719 - CCNA_00799 0.40 +0.3 863,735 + CCNA_00799 0.41 -0.0 863,751 - CCNA_00799 0.42 -1.2 863,807 + CCNA_00799 0.45 +0.3 863,812 + CCNA_00799 0.46 -0.7 863,813 + CCNA_00799 0.46 +0.7 863,843 - CCNA_00799 0.47 -1.0
Or see this region's nucleotide sequence