Experiment: PYE with Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00794 and CCNA_00795 are separated by 10 nucleotides CCNA_00795 and CCNA_00796 overlap by 8 nucleotides CCNA_00796 and CCNA_03940 are separated by 109 nucleotides CCNA_03940 and CCNA_00798 are separated by 8 nucleotides
CCNA_00794: CCNA_00794 - conserved membrane spanning protein, at 857,776 to 858,969
_00794
CCNA_00795: CCNA_00795 - two-component response regulator FixJ, at 858,980 to 859,588
_00795
CCNA_00796: CCNA_00796 - oxygen sensory histidine kinase FixL, at 859,581 to 861,068
_00796
CCNA_03940: CCNA_03940 - hypothetical protein, at 861,178 to 861,285
_03940
CCNA_00798: CCNA_00798 - ABC transporter, ATP-binding protein cydC, at 861,294 to 862,892
_00798
Position (kb) 859
860
861
862 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 858.602 kb on - strand, within CCNA_00794 at 858.624 kb on - strand, within CCNA_00794 at 858.625 kb on + strand, within CCNA_00794 at 858.630 kb on + strand, within CCNA_00794 at 858.633 kb on - strand, within CCNA_00794 at 858.633 kb on - strand, within CCNA_00794 at 858.633 kb on - strand, within CCNA_00794 at 858.633 kb on - strand, within CCNA_00794 at 858.642 kb on + strand, within CCNA_00794 at 858.679 kb on + strand, within CCNA_00794 at 858.682 kb on - strand, within CCNA_00794 at 858.682 kb on - strand, within CCNA_00794 at 858.700 kb on + strand, within CCNA_00794 at 858.728 kb on + strand, within CCNA_00794 at 858.730 kb on + strand, within CCNA_00794 at 858.730 kb on + strand, within CCNA_00794 at 858.738 kb on - strand, within CCNA_00794 at 858.738 kb on - strand, within CCNA_00794 at 858.738 kb on - strand, within CCNA_00794 at 858.760 kb on + strand, within CCNA_00794 at 858.856 kb on - strand at 858.930 kb on + strand at 858.938 kb on - strand at 858.938 kb on - strand at 858.966 kb on - strand at 858.973 kb on + strand at 859.008 kb on - strand at 859.064 kb on + strand, within CCNA_00795 at 859.064 kb on + strand, within CCNA_00795 at 859.064 kb on + strand, within CCNA_00795 at 859.091 kb on - strand, within CCNA_00795 at 859.175 kb on - strand, within CCNA_00795 at 859.208 kb on - strand, within CCNA_00795 at 859.208 kb on - strand, within CCNA_00795 at 859.215 kb on + strand, within CCNA_00795 at 859.215 kb on + strand, within CCNA_00795 at 859.297 kb on - strand, within CCNA_00795 at 859.406 kb on + strand, within CCNA_00795 at 859.408 kb on + strand, within CCNA_00795 at 859.414 kb on - strand, within CCNA_00795 at 859.416 kb on - strand, within CCNA_00795 at 859.423 kb on + strand, within CCNA_00795 at 859.435 kb on - strand, within CCNA_00795 at 859.443 kb on + strand, within CCNA_00795 at 859.443 kb on + strand, within CCNA_00795 at 859.451 kb on - strand, within CCNA_00795 at 859.492 kb on - strand, within CCNA_00795 at 859.497 kb on + strand, within CCNA_00795 at 859.505 kb on - strand, within CCNA_00795 at 859.577 kb on + strand at 859.584 kb on + strand at 859.606 kb on - strand at 859.618 kb on - strand at 859.622 kb on - strand at 859.629 kb on - strand at 859.629 kb on - strand at 859.667 kb on + strand at 859.672 kb on + strand at 859.672 kb on + strand at 859.680 kb on - strand at 859.701 kb on - strand at 859.729 kb on + strand at 859.737 kb on - strand, within CCNA_00796 at 859.737 kb on - strand, within CCNA_00796 at 859.781 kb on - strand, within CCNA_00796 at 859.781 kb on - strand, within CCNA_00796 at 859.820 kb on + strand, within CCNA_00796 at 859.823 kb on - strand, within CCNA_00796 at 859.852 kb on - strand, within CCNA_00796 at 859.852 kb on - strand, within CCNA_00796 at 859.854 kb on + strand, within CCNA_00796 at 859.862 kb on - strand, within CCNA_00796 at 859.862 kb on - strand, within CCNA_00796 at 859.862 kb on - strand, within CCNA_00796 at 859.877 kb on + strand, within CCNA_00796 at 859.877 kb on + strand, within CCNA_00796 at 859.877 kb on + strand, within CCNA_00796 at 859.919 kb on - strand, within CCNA_00796 at 859.981 kb on - strand, within CCNA_00796 at 859.981 kb on - strand, within CCNA_00796 at 859.985 kb on + strand, within CCNA_00796 at 860.014 kb on - strand, within CCNA_00796 at 860.014 kb on - strand, within CCNA_00796 at 860.014 kb on - strand, within CCNA_00796 at 860.056 kb on - strand, within CCNA_00796 at 860.056 kb on - strand, within CCNA_00796 at 860.056 kb on - strand, within CCNA_00796 at 860.058 kb on + strand, within CCNA_00796 at 860.133 kb on + strand, within CCNA_00796 at 860.136 kb on - strand, within CCNA_00796 at 860.159 kb on - strand, within CCNA_00796 at 860.166 kb on + strand, within CCNA_00796 at 860.257 kb on - strand, within CCNA_00796 at 860.276 kb on - strand, within CCNA_00796 at 860.277 kb on - strand, within CCNA_00796 at 860.318 kb on - strand, within CCNA_00796 at 860.359 kb on - strand, within CCNA_00796 at 860.474 kb on - strand, within CCNA_00796 at 860.490 kb on + strand, within CCNA_00796 at 860.490 kb on + strand, within CCNA_00796 at 860.629 kb on - strand, within CCNA_00796 at 860.687 kb on - strand, within CCNA_00796 at 860.708 kb on - strand, within CCNA_00796 at 860.756 kb on - strand, within CCNA_00796 at 860.759 kb on + strand, within CCNA_00796 at 860.761 kb on - strand, within CCNA_00796 at 860.797 kb on + strand, within CCNA_00796 at 860.805 kb on - strand, within CCNA_00796 at 860.805 kb on - strand, within CCNA_00796 at 860.805 kb on - strand, within CCNA_00796 at 860.836 kb on - strand, within CCNA_00796 at 860.836 kb on - strand, within CCNA_00796 at 860.841 kb on - strand, within CCNA_00796 at 860.850 kb on + strand, within CCNA_00796 at 860.858 kb on - strand, within CCNA_00796 at 860.870 kb on + strand, within CCNA_00796 at 860.870 kb on + strand, within CCNA_00796 at 860.870 kb on + strand, within CCNA_00796 at 860.876 kb on + strand, within CCNA_00796 at 860.878 kb on - strand, within CCNA_00796 at 860.878 kb on - strand, within CCNA_00796 at 860.878 kb on - strand, within CCNA_00796 at 860.894 kb on - strand, within CCNA_00796 at 860.901 kb on + strand, within CCNA_00796 at 860.901 kb on + strand, within CCNA_00796 at 860.904 kb on - strand, within CCNA_00796 at 860.909 kb on - strand, within CCNA_00796 at 860.909 kb on - strand, within CCNA_00796 at 860.932 kb on - strand at 860.967 kb on - strand at 861.028 kb on + strand at 861.028 kb on + strand at 861.042 kb on + strand at 861.121 kb on - strand at 861.121 kb on - strand at 861.124 kb on + strand at 861.124 kb on + strand at 861.131 kb on - strand at 861.132 kb on - strand at 861.132 kb on - strand at 861.132 kb on - strand at 861.132 kb on - strand at 861.132 kb on - strand at 861.137 kb on + strand at 861.137 kb on + strand at 861.147 kb on + strand at 861.153 kb on + strand at 861.153 kb on + strand at 861.250 kb on - strand, within CCNA_03940 at 861.252 kb on + strand, within CCNA_03940 at 861.260 kb on - strand, within CCNA_03940 at 861.268 kb on - strand, within CCNA_03940 at 861.309 kb on - strand at 861.315 kb on + strand at 861.361 kb on - strand at 861.405 kb on + strand at 861.474 kb on + strand, within CCNA_00798 at 861.482 kb on - strand, within CCNA_00798 at 861.482 kb on - strand, within CCNA_00798 at 861.482 kb on - strand, within CCNA_00798 at 861.505 kb on + strand, within CCNA_00798 at 861.529 kb on + strand, within CCNA_00798 at 861.534 kb on + strand, within CCNA_00798 at 861.539 kb on + strand, within CCNA_00798 at 861.540 kb on + strand, within CCNA_00798 at 861.542 kb on - strand, within CCNA_00798 at 861.602 kb on - strand, within CCNA_00798 at 861.602 kb on - strand, within CCNA_00798 at 861.602 kb on - strand, within CCNA_00798 at 861.616 kb on + strand, within CCNA_00798 at 861.655 kb on + strand, within CCNA_00798 at 861.655 kb on + strand, within CCNA_00798 at 861.655 kb on + strand, within CCNA_00798 at 861.663 kb on - strand, within CCNA_00798 at 861.764 kb on + strand, within CCNA_00798 at 861.764 kb on + strand, within CCNA_00798 at 861.788 kb on + strand, within CCNA_00798 at 861.796 kb on - strand, within CCNA_00798 at 861.796 kb on - strand, within CCNA_00798 at 861.825 kb on + strand, within CCNA_00798 at 861.840 kb on - strand, within CCNA_00798 at 861.841 kb on - strand, within CCNA_00798 at 861.866 kb on + strand, within CCNA_00798 at 861.874 kb on - strand, within CCNA_00798 at 861.874 kb on - strand, within CCNA_00798 at 861.874 kb on - strand, within CCNA_00798 at 861.889 kb on - strand, within CCNA_00798 at 861.889 kb on - strand, within CCNA_00798 at 861.889 kb on - strand, within CCNA_00798 at 861.891 kb on - strand, within CCNA_00798 at 861.891 kb on - strand, within CCNA_00798 at 861.891 kb on - strand, within CCNA_00798 at 861.919 kb on + strand, within CCNA_00798 at 861.919 kb on + strand, within CCNA_00798 at 861.919 kb on + strand, within CCNA_00798 at 861.927 kb on - strand, within CCNA_00798 at 861.941 kb on - strand, within CCNA_00798 at 861.945 kb on + strand, within CCNA_00798 at 861.945 kb on + strand, within CCNA_00798 at 861.951 kb on - strand, within CCNA_00798 at 861.953 kb on - strand, within CCNA_00798 at 862.013 kb on + strand, within CCNA_00798 at 862.013 kb on - strand, within CCNA_00798 at 862.058 kb on - strand, within CCNA_00798
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.0001 mg/ml remove 858,602 - CCNA_00794 0.69 -0.8 858,624 - CCNA_00794 0.71 -0.0 858,625 + CCNA_00794 0.71 +0.9 858,630 + CCNA_00794 0.72 -0.2 858,633 - CCNA_00794 0.72 -0.4 858,633 - CCNA_00794 0.72 +1.7 858,633 - CCNA_00794 0.72 -0.4 858,633 - CCNA_00794 0.72 -1.0 858,642 + CCNA_00794 0.73 -0.5 858,679 + CCNA_00794 0.76 -0.2 858,682 - CCNA_00794 0.76 +0.3 858,682 - CCNA_00794 0.76 -1.1 858,700 + CCNA_00794 0.77 +1.3 858,728 + CCNA_00794 0.80 +0.5 858,730 + CCNA_00794 0.80 -1.5 858,730 + CCNA_00794 0.80 -0.1 858,738 - CCNA_00794 0.81 -0.6 858,738 - CCNA_00794 0.81 -0.4 858,738 - CCNA_00794 0.81 -1.1 858,760 + CCNA_00794 0.82 +0.5 858,856 - +0.7 858,930 + -0.6 858,938 - +0.4 858,938 - +1.1 858,966 - +0.4 858,973 + -0.2 859,008 - -2.2 859,064 + CCNA_00795 0.14 -0.5 859,064 + CCNA_00795 0.14 -0.6 859,064 + CCNA_00795 0.14 -0.2 859,091 - CCNA_00795 0.18 -0.6 859,175 - CCNA_00795 0.32 -1.0 859,208 - CCNA_00795 0.37 +0.7 859,208 - CCNA_00795 0.37 -0.6 859,215 + CCNA_00795 0.39 -0.3 859,215 + CCNA_00795 0.39 -0.4 859,297 - CCNA_00795 0.52 +0.7 859,406 + CCNA_00795 0.70 +1.3 859,408 + CCNA_00795 0.70 -0.6 859,414 - CCNA_00795 0.71 -1.6 859,416 - CCNA_00795 0.72 +0.3 859,423 + CCNA_00795 0.73 -1.5 859,435 - CCNA_00795 0.75 -0.7 859,443 + CCNA_00795 0.76 -1.0 859,443 + CCNA_00795 0.76 +1.0 859,451 - CCNA_00795 0.77 -1.5 859,492 - CCNA_00795 0.84 +0.6 859,497 + CCNA_00795 0.85 -0.3 859,505 - CCNA_00795 0.86 -2.1 859,577 + +0.3 859,584 + -0.6 859,606 - +0.6 859,618 - -1.5 859,622 - -0.7 859,629 - +0.3 859,629 - +0.5 859,667 + +0.1 859,672 + +0.1 859,672 + -1.8 859,680 - -1.0 859,701 - -0.5 859,729 + -1.2 859,737 - CCNA_00796 0.10 -1.5 859,737 - CCNA_00796 0.10 -0.5 859,781 - CCNA_00796 0.13 +0.8 859,781 - CCNA_00796 0.13 -0.1 859,820 + CCNA_00796 0.16 -0.4 859,823 - CCNA_00796 0.16 +0.9 859,852 - CCNA_00796 0.18 +0.1 859,852 - CCNA_00796 0.18 +0.5 859,854 + CCNA_00796 0.18 -1.2 859,862 - CCNA_00796 0.19 -0.5 859,862 - CCNA_00796 0.19 +2.3 859,862 - CCNA_00796 0.19 -2.1 859,877 + CCNA_00796 0.20 +1.5 859,877 + CCNA_00796 0.20 -2.2 859,877 + CCNA_00796 0.20 -1.8 859,919 - CCNA_00796 0.23 +0.5 859,981 - CCNA_00796 0.27 -1.2 859,981 - CCNA_00796 0.27 +1.7 859,985 + CCNA_00796 0.27 -0.7 860,014 - CCNA_00796 0.29 +0.7 860,014 - CCNA_00796 0.29 -1.5 860,014 - CCNA_00796 0.29 +0.7 860,056 - CCNA_00796 0.32 +1.0 860,056 - CCNA_00796 0.32 +0.3 860,056 - CCNA_00796 0.32 -1.2 860,058 + CCNA_00796 0.32 +0.3 860,133 + CCNA_00796 0.37 -0.9 860,136 - CCNA_00796 0.37 -0.2 860,159 - CCNA_00796 0.39 +0.3 860,166 + CCNA_00796 0.39 +0.7 860,257 - CCNA_00796 0.45 -0.4 860,276 - CCNA_00796 0.47 +2.9 860,277 - CCNA_00796 0.47 -2.0 860,318 - CCNA_00796 0.50 +0.5 860,359 - CCNA_00796 0.52 -0.5 860,474 - CCNA_00796 0.60 -0.1 860,490 + CCNA_00796 0.61 -1.2 860,490 + CCNA_00796 0.61 -1.0 860,629 - CCNA_00796 0.70 -1.4 860,687 - CCNA_00796 0.74 +1.0 860,708 - CCNA_00796 0.76 -1.1 860,756 - CCNA_00796 0.79 +0.1 860,759 + CCNA_00796 0.79 -2.0 860,761 - CCNA_00796 0.79 -0.9 860,797 + CCNA_00796 0.82 +0.3 860,805 - CCNA_00796 0.82 -1.0 860,805 - CCNA_00796 0.82 -0.2 860,805 - CCNA_00796 0.82 -0.4 860,836 - CCNA_00796 0.84 +0.5 860,836 - CCNA_00796 0.84 +0.7 860,841 - CCNA_00796 0.85 -0.2 860,850 + CCNA_00796 0.85 -0.3 860,858 - CCNA_00796 0.86 -1.2 860,870 + CCNA_00796 0.87 -0.5 860,870 + CCNA_00796 0.87 -1.4 860,870 + CCNA_00796 0.87 -1.5 860,876 + CCNA_00796 0.87 +0.5 860,878 - CCNA_00796 0.87 -0.8 860,878 - CCNA_00796 0.87 -0.8 860,878 - CCNA_00796 0.87 -0.2 860,894 - CCNA_00796 0.88 -1.2 860,901 + CCNA_00796 0.89 -2.2 860,901 + CCNA_00796 0.89 -1.0 860,904 - CCNA_00796 0.89 -0.9 860,909 - CCNA_00796 0.89 +0.5 860,909 - CCNA_00796 0.89 +1.0 860,932 - -1.4 860,967 - -1.0 861,028 + -0.5 861,028 + +0.1 861,042 + -1.0 861,121 - +0.0 861,121 - +0.4 861,124 + +0.5 861,124 + +0.9 861,131 - -1.4 861,132 - -1.4 861,132 - +0.1 861,132 - -0.8 861,132 - +0.6 861,132 - +0.3 861,137 + +0.6 861,137 + +1.3 861,147 + +0.0 861,153 + -0.3 861,153 + +1.7 861,250 - CCNA_03940 0.67 -1.9 861,252 + CCNA_03940 0.69 +0.7 861,260 - CCNA_03940 0.76 +0.5 861,268 - CCNA_03940 0.83 +2.5 861,309 - +0.2 861,315 + +2.7 861,361 - -0.5 861,405 + +2.3 861,474 + CCNA_00798 0.11 -0.0 861,482 - CCNA_00798 0.12 +1.0 861,482 - CCNA_00798 0.12 -0.7 861,482 - CCNA_00798 0.12 +1.3 861,505 + CCNA_00798 0.13 -0.3 861,529 + CCNA_00798 0.15 -0.8 861,534 + CCNA_00798 0.15 +0.3 861,539 + CCNA_00798 0.15 -1.5 861,540 + CCNA_00798 0.15 +0.7 861,542 - CCNA_00798 0.16 +0.7 861,602 - CCNA_00798 0.19 +1.3 861,602 - CCNA_00798 0.19 -0.9 861,602 - CCNA_00798 0.19 -0.3 861,616 + CCNA_00798 0.20 -1.0 861,655 + CCNA_00798 0.23 +1.0 861,655 + CCNA_00798 0.23 +1.3 861,655 + CCNA_00798 0.23 -0.5 861,663 - CCNA_00798 0.23 +1.3 861,764 + CCNA_00798 0.29 -0.5 861,764 + CCNA_00798 0.29 -0.8 861,788 + CCNA_00798 0.31 -0.6 861,796 - CCNA_00798 0.31 -1.0 861,796 - CCNA_00798 0.31 -0.8 861,825 + CCNA_00798 0.33 -1.5 861,840 - CCNA_00798 0.34 +0.1 861,841 - CCNA_00798 0.34 -0.8 861,866 + CCNA_00798 0.36 -0.8 861,874 - CCNA_00798 0.36 -1.1 861,874 - CCNA_00798 0.36 +0.7 861,874 - CCNA_00798 0.36 -1.3 861,889 - CCNA_00798 0.37 -0.0 861,889 - CCNA_00798 0.37 +0.7 861,889 - CCNA_00798 0.37 -0.7 861,891 - CCNA_00798 0.37 -0.1 861,891 - CCNA_00798 0.37 +0.1 861,891 - CCNA_00798 0.37 +1.5 861,919 + CCNA_00798 0.39 -1.0 861,919 + CCNA_00798 0.39 -0.3 861,919 + CCNA_00798 0.39 +0.2 861,927 - CCNA_00798 0.40 +0.6 861,941 - CCNA_00798 0.40 -1.7 861,945 + CCNA_00798 0.41 -1.2 861,945 + CCNA_00798 0.41 -0.2 861,951 - CCNA_00798 0.41 +0.4 861,953 - CCNA_00798 0.41 -0.0 862,013 + CCNA_00798 0.45 +0.3 862,013 - CCNA_00798 0.45 +0.5 862,058 - CCNA_00798 0.48 +0.1
Or see this region's nucleotide sequence