Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00795

Experiment: PYE with Tetracycline 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00794 and CCNA_00795 are separated by 10 nucleotidesCCNA_00795 and CCNA_00796 overlap by 8 nucleotides CCNA_00794: CCNA_00794 - conserved membrane spanning protein, at 857,776 to 858,969 _00794 CCNA_00795: CCNA_00795 - two-component response regulator FixJ, at 858,980 to 859,588 _00795 CCNA_00796: CCNA_00796 - oxygen sensory histidine kinase FixL, at 859,581 to 861,068 _00796 Position (kb) 858 859 860Strain fitness (log2 ratio) -2 -1 0 1 2 3at 858.033 kb on - strand, within CCNA_00794at 858.049 kb on + strand, within CCNA_00794at 858.049 kb on + strand, within CCNA_00794at 858.067 kb on + strand, within CCNA_00794at 858.067 kb on + strand, within CCNA_00794at 858.080 kb on + strand, within CCNA_00794at 858.111 kb on + strand, within CCNA_00794at 858.119 kb on - strand, within CCNA_00794at 858.125 kb on + strand, within CCNA_00794at 858.125 kb on + strand, within CCNA_00794at 858.125 kb on + strand, within CCNA_00794at 858.150 kb on + strand, within CCNA_00794at 858.168 kb on - strand, within CCNA_00794at 858.178 kb on + strand, within CCNA_00794at 858.186 kb on - strand, within CCNA_00794at 858.186 kb on - strand, within CCNA_00794at 858.222 kb on + strand, within CCNA_00794at 858.230 kb on - strand, within CCNA_00794at 858.230 kb on - strand, within CCNA_00794at 858.283 kb on + strand, within CCNA_00794at 858.293 kb on + strand, within CCNA_00794at 858.301 kb on - strand, within CCNA_00794at 858.304 kb on + strand, within CCNA_00794at 858.332 kb on + strand, within CCNA_00794at 858.340 kb on - strand, within CCNA_00794at 858.353 kb on - strand, within CCNA_00794at 858.357 kb on + strand, within CCNA_00794at 858.365 kb on - strand, within CCNA_00794at 858.367 kb on + strand, within CCNA_00794at 858.387 kb on + strand, within CCNA_00794at 858.403 kb on + strand, within CCNA_00794at 858.413 kb on + strand, within CCNA_00794at 858.423 kb on + strand, within CCNA_00794at 858.423 kb on + strand, within CCNA_00794at 858.442 kb on + strand, within CCNA_00794at 858.447 kb on + strand, within CCNA_00794at 858.450 kb on - strand, within CCNA_00794at 858.462 kb on - strand, within CCNA_00794at 858.484 kb on - strand, within CCNA_00794at 858.495 kb on - strand, within CCNA_00794at 858.538 kb on - strand, within CCNA_00794at 858.566 kb on + strand, within CCNA_00794at 858.566 kb on + strand, within CCNA_00794at 858.602 kb on - strand, within CCNA_00794at 858.624 kb on - strand, within CCNA_00794at 858.625 kb on + strand, within CCNA_00794at 858.630 kb on + strand, within CCNA_00794at 858.633 kb on - strand, within CCNA_00794at 858.633 kb on - strand, within CCNA_00794at 858.633 kb on - strand, within CCNA_00794at 858.633 kb on - strand, within CCNA_00794at 858.642 kb on + strand, within CCNA_00794at 858.679 kb on + strand, within CCNA_00794at 858.682 kb on - strand, within CCNA_00794at 858.682 kb on - strand, within CCNA_00794at 858.700 kb on + strand, within CCNA_00794at 858.728 kb on + strand, within CCNA_00794at 858.730 kb on + strand, within CCNA_00794at 858.730 kb on + strand, within CCNA_00794at 858.738 kb on - strand, within CCNA_00794at 858.738 kb on - strand, within CCNA_00794at 858.738 kb on - strand, within CCNA_00794at 858.760 kb on + strand, within CCNA_00794at 858.856 kb on - strandat 858.930 kb on + strandat 858.938 kb on - strandat 858.938 kb on - strandat 858.966 kb on - strandat 858.973 kb on + strandat 859.008 kb on - strandat 859.064 kb on + strand, within CCNA_00795at 859.064 kb on + strand, within CCNA_00795at 859.064 kb on + strand, within CCNA_00795at 859.091 kb on - strand, within CCNA_00795at 859.175 kb on - strand, within CCNA_00795at 859.208 kb on - strand, within CCNA_00795at 859.208 kb on - strand, within CCNA_00795at 859.215 kb on + strand, within CCNA_00795at 859.215 kb on + strand, within CCNA_00795at 859.297 kb on - strand, within CCNA_00795at 859.406 kb on + strand, within CCNA_00795at 859.408 kb on + strand, within CCNA_00795at 859.414 kb on - strand, within CCNA_00795at 859.416 kb on - strand, within CCNA_00795at 859.423 kb on + strand, within CCNA_00795at 859.435 kb on - strand, within CCNA_00795at 859.443 kb on + strand, within CCNA_00795at 859.443 kb on + strand, within CCNA_00795at 859.451 kb on - strand, within CCNA_00795at 859.492 kb on - strand, within CCNA_00795at 859.497 kb on + strand, within CCNA_00795at 859.505 kb on - strand, within CCNA_00795at 859.577 kb on + strandat 859.584 kb on + strandat 859.606 kb on - strandat 859.618 kb on - strandat 859.622 kb on - strandat 859.629 kb on - strandat 859.629 kb on - strandat 859.667 kb on + strandat 859.672 kb on + strandat 859.672 kb on + strandat 859.680 kb on - strandat 859.701 kb on - strandat 859.729 kb on + strandat 859.737 kb on - strand, within CCNA_00796at 859.737 kb on - strand, within CCNA_00796at 859.781 kb on - strand, within CCNA_00796at 859.781 kb on - strand, within CCNA_00796at 859.820 kb on + strand, within CCNA_00796at 859.823 kb on - strand, within CCNA_00796at 859.852 kb on - strand, within CCNA_00796at 859.852 kb on - strand, within CCNA_00796at 859.854 kb on + strand, within CCNA_00796at 859.862 kb on - strand, within CCNA_00796at 859.862 kb on - strand, within CCNA_00796at 859.862 kb on - strand, within CCNA_00796at 859.877 kb on + strand, within CCNA_00796at 859.877 kb on + strand, within CCNA_00796at 859.877 kb on + strand, within CCNA_00796at 859.919 kb on - strand, within CCNA_00796at 859.981 kb on - strand, within CCNA_00796at 859.981 kb on - strand, within CCNA_00796at 859.985 kb on + strand, within CCNA_00796at 860.014 kb on - strand, within CCNA_00796at 860.014 kb on - strand, within CCNA_00796at 860.014 kb on - strand, within CCNA_00796at 860.056 kb on - strand, within CCNA_00796at 860.056 kb on - strand, within CCNA_00796at 860.056 kb on - strand, within CCNA_00796at 860.058 kb on + strand, within CCNA_00796at 860.133 kb on + strand, within CCNA_00796at 860.136 kb on - strand, within CCNA_00796at 860.159 kb on - strand, within CCNA_00796at 860.166 kb on + strand, within CCNA_00796at 860.257 kb on - strand, within CCNA_00796at 860.276 kb on - strand, within CCNA_00796at 860.277 kb on - strand, within CCNA_00796at 860.318 kb on - strand, within CCNA_00796at 860.359 kb on - strand, within CCNA_00796at 860.474 kb on - strand, within CCNA_00796at 860.490 kb on + strand, within CCNA_00796at 860.490 kb on + strand, within CCNA_00796

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.0001 mg/ml
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858,033 - CCNA_00794 0.22 -0.4
858,049 + CCNA_00794 0.23 +1.3
858,049 + CCNA_00794 0.23 -0.8
858,067 + CCNA_00794 0.24 -0.6
858,067 + CCNA_00794 0.24 +0.1
858,080 + CCNA_00794 0.25 +0.2
858,111 + CCNA_00794 0.28 -0.6
858,119 - CCNA_00794 0.29 +1.4
858,125 + CCNA_00794 0.29 +0.5
858,125 + CCNA_00794 0.29 +0.1
858,125 + CCNA_00794 0.29 +0.8
858,150 + CCNA_00794 0.31 -0.5
858,168 - CCNA_00794 0.33 -0.7
858,178 + CCNA_00794 0.34 -0.4
858,186 - CCNA_00794 0.34 -1.6
858,186 - CCNA_00794 0.34 +0.7
858,222 + CCNA_00794 0.37 +0.8
858,230 - CCNA_00794 0.38 -1.5
858,230 - CCNA_00794 0.38 -1.1
858,283 + CCNA_00794 0.42 +0.8
858,293 + CCNA_00794 0.43 -0.9
858,301 - CCNA_00794 0.44 -0.4
858,304 + CCNA_00794 0.44 +0.3
858,332 + CCNA_00794 0.47 -1.4
858,340 - CCNA_00794 0.47 +0.0
858,353 - CCNA_00794 0.48 -0.8
858,357 + CCNA_00794 0.49 -0.7
858,365 - CCNA_00794 0.49 +0.4
858,367 + CCNA_00794 0.49 -1.5
858,387 + CCNA_00794 0.51 -0.0
858,403 + CCNA_00794 0.53 -0.7
858,413 + CCNA_00794 0.53 -0.4
858,423 + CCNA_00794 0.54 -0.8
858,423 + CCNA_00794 0.54 -0.3
858,442 + CCNA_00794 0.56 +2.0
858,447 + CCNA_00794 0.56 +1.5
858,450 - CCNA_00794 0.56 -1.4
858,462 - CCNA_00794 0.57 +0.0
858,484 - CCNA_00794 0.59 -0.5
858,495 - CCNA_00794 0.60 +1.5
858,538 - CCNA_00794 0.64 -1.2
858,566 + CCNA_00794 0.66 -1.4
858,566 + CCNA_00794 0.66 +1.7
858,602 - CCNA_00794 0.69 -0.8
858,624 - CCNA_00794 0.71 -0.0
858,625 + CCNA_00794 0.71 +0.9
858,630 + CCNA_00794 0.72 -0.2
858,633 - CCNA_00794 0.72 -0.4
858,633 - CCNA_00794 0.72 +1.7
858,633 - CCNA_00794 0.72 -0.4
858,633 - CCNA_00794 0.72 -1.0
858,642 + CCNA_00794 0.73 -0.5
858,679 + CCNA_00794 0.76 -0.2
858,682 - CCNA_00794 0.76 +0.3
858,682 - CCNA_00794 0.76 -1.1
858,700 + CCNA_00794 0.77 +1.3
858,728 + CCNA_00794 0.80 +0.5
858,730 + CCNA_00794 0.80 -1.5
858,730 + CCNA_00794 0.80 -0.1
858,738 - CCNA_00794 0.81 -0.6
858,738 - CCNA_00794 0.81 -0.4
858,738 - CCNA_00794 0.81 -1.1
858,760 + CCNA_00794 0.82 +0.5
858,856 - +0.7
858,930 + -0.6
858,938 - +0.4
858,938 - +1.1
858,966 - +0.4
858,973 + -0.2
859,008 - -2.2
859,064 + CCNA_00795 0.14 -0.5
859,064 + CCNA_00795 0.14 -0.6
859,064 + CCNA_00795 0.14 -0.2
859,091 - CCNA_00795 0.18 -0.6
859,175 - CCNA_00795 0.32 -1.0
859,208 - CCNA_00795 0.37 +0.7
859,208 - CCNA_00795 0.37 -0.6
859,215 + CCNA_00795 0.39 -0.3
859,215 + CCNA_00795 0.39 -0.4
859,297 - CCNA_00795 0.52 +0.7
859,406 + CCNA_00795 0.70 +1.3
859,408 + CCNA_00795 0.70 -0.6
859,414 - CCNA_00795 0.71 -1.6
859,416 - CCNA_00795 0.72 +0.3
859,423 + CCNA_00795 0.73 -1.5
859,435 - CCNA_00795 0.75 -0.7
859,443 + CCNA_00795 0.76 -1.0
859,443 + CCNA_00795 0.76 +1.0
859,451 - CCNA_00795 0.77 -1.5
859,492 - CCNA_00795 0.84 +0.6
859,497 + CCNA_00795 0.85 -0.3
859,505 - CCNA_00795 0.86 -2.1
859,577 + +0.3
859,584 + -0.6
859,606 - +0.6
859,618 - -1.5
859,622 - -0.7
859,629 - +0.3
859,629 - +0.5
859,667 + +0.1
859,672 + +0.1
859,672 + -1.8
859,680 - -1.0
859,701 - -0.5
859,729 + -1.2
859,737 - CCNA_00796 0.10 -1.5
859,737 - CCNA_00796 0.10 -0.5
859,781 - CCNA_00796 0.13 +0.8
859,781 - CCNA_00796 0.13 -0.1
859,820 + CCNA_00796 0.16 -0.4
859,823 - CCNA_00796 0.16 +0.9
859,852 - CCNA_00796 0.18 +0.1
859,852 - CCNA_00796 0.18 +0.5
859,854 + CCNA_00796 0.18 -1.2
859,862 - CCNA_00796 0.19 -0.5
859,862 - CCNA_00796 0.19 +2.3
859,862 - CCNA_00796 0.19 -2.1
859,877 + CCNA_00796 0.20 +1.5
859,877 + CCNA_00796 0.20 -2.2
859,877 + CCNA_00796 0.20 -1.8
859,919 - CCNA_00796 0.23 +0.5
859,981 - CCNA_00796 0.27 -1.2
859,981 - CCNA_00796 0.27 +1.7
859,985 + CCNA_00796 0.27 -0.7
860,014 - CCNA_00796 0.29 +0.7
860,014 - CCNA_00796 0.29 -1.5
860,014 - CCNA_00796 0.29 +0.7
860,056 - CCNA_00796 0.32 +1.0
860,056 - CCNA_00796 0.32 +0.3
860,056 - CCNA_00796 0.32 -1.2
860,058 + CCNA_00796 0.32 +0.3
860,133 + CCNA_00796 0.37 -0.9
860,136 - CCNA_00796 0.37 -0.2
860,159 - CCNA_00796 0.39 +0.3
860,166 + CCNA_00796 0.39 +0.7
860,257 - CCNA_00796 0.45 -0.4
860,276 - CCNA_00796 0.47 +2.9
860,277 - CCNA_00796 0.47 -2.0
860,318 - CCNA_00796 0.50 +0.5
860,359 - CCNA_00796 0.52 -0.5
860,474 - CCNA_00796 0.60 -0.1
860,490 + CCNA_00796 0.61 -1.2
860,490 + CCNA_00796 0.61 -1.0

Or see this region's nucleotide sequence