Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00588

Experiment: PYE with Tetracycline 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00587 and CCNA_00588 are separated by 173 nucleotidesCCNA_00588 and CCNA_00589 are separated by 7 nucleotidesCCNA_00589 and CCNA_00590 are separated by 47 nucleotides CCNA_00587: CCNA_00587 - alpha/beta hydrolase family protein, at 615,934 to 617,430 _00587 CCNA_00588: CCNA_00588 - SapA domain protein, at 617,604 to 617,843 _00588 CCNA_00589: CCNA_00589 - hypothetical protein, at 617,851 to 618,567 _00589 CCNA_00590: CCNA_00590 - FixC-family flavoprotein dehydrogenase, at 618,615 to 619,724 _00590 Position (kb) 617 618Strain fitness (log2 ratio) -2 -1 0 1 2 3at 616.608 kb on + strandat 616.613 kb on + strand, within CCNA_00587at 616.614 kb on + strand, within CCNA_00587at 616.619 kb on + strand, within CCNA_00587at 616.636 kb on - strand, within CCNA_00587at 616.636 kb on - strand, within CCNA_00587at 616.648 kb on + strand, within CCNA_00587at 616.653 kb on + strand, within CCNA_00587at 616.658 kb on + strand, within CCNA_00587at 616.666 kb on - strand, within CCNA_00587at 616.688 kb on - strand, within CCNA_00587at 616.763 kb on + strand, within CCNA_00587at 616.763 kb on + strand, within CCNA_00587at 616.771 kb on - strand, within CCNA_00587at 616.788 kb on - strand, within CCNA_00587at 616.803 kb on + strand, within CCNA_00587at 616.805 kb on - strand, within CCNA_00587at 616.829 kb on + strand, within CCNA_00587at 616.837 kb on - strand, within CCNA_00587at 616.837 kb on - strand, within CCNA_00587at 616.842 kb on - strand, within CCNA_00587at 616.842 kb on - strand, within CCNA_00587at 616.849 kb on + strand, within CCNA_00587at 616.884 kb on + strand, within CCNA_00587at 616.884 kb on + strand, within CCNA_00587at 616.885 kb on - strand, within CCNA_00587at 616.892 kb on + strand, within CCNA_00587at 616.973 kb on - strand, within CCNA_00587at 617.025 kb on + strand, within CCNA_00587at 617.066 kb on + strand, within CCNA_00587at 617.074 kb on - strand, within CCNA_00587at 617.079 kb on - strand, within CCNA_00587at 617.084 kb on - strand, within CCNA_00587at 617.101 kb on + strand, within CCNA_00587at 617.101 kb on + strand, within CCNA_00587at 617.106 kb on + strand, within CCNA_00587at 617.144 kb on + strand, within CCNA_00587at 617.185 kb on + strand, within CCNA_00587at 617.235 kb on - strand, within CCNA_00587at 617.264 kb on - strand, within CCNA_00587at 617.264 kb on - strand, within CCNA_00587at 617.264 kb on - strand, within CCNA_00587at 617.282 kb on - strandat 617.333 kb on + strandat 617.341 kb on + strandat 617.341 kb on + strandat 617.341 kb on + strandat 617.341 kb on + strandat 617.342 kb on + strandat 617.349 kb on - strandat 617.349 kb on - strandat 617.380 kb on + strandat 617.420 kb on + strandat 617.423 kb on - strandat 617.442 kb on + strandat 617.465 kb on - strandat 617.493 kb on + strandat 617.499 kb on - strandat 617.501 kb on - strandat 617.501 kb on - strandat 617.509 kb on - strandat 617.514 kb on + strandat 617.521 kb on + strandat 617.521 kb on + strandat 617.521 kb on + strandat 617.521 kb on + strandat 617.521 kb on + strandat 617.521 kb on + strandat 617.529 kb on - strandat 617.529 kb on - strandat 617.529 kb on - strandat 617.569 kb on + strandat 617.584 kb on - strandat 617.596 kb on - strandat 617.596 kb on - strandat 617.642 kb on - strand, within CCNA_00588at 617.648 kb on + strand, within CCNA_00588at 617.727 kb on - strand, within CCNA_00588at 617.869 kb on - strandat 617.873 kb on + strandat 617.875 kb on - strandat 617.881 kb on - strandat 617.933 kb on - strand, within CCNA_00589at 617.935 kb on + strand, within CCNA_00589at 617.963 kb on - strand, within CCNA_00589at 617.970 kb on + strand, within CCNA_00589at 617.989 kb on + strand, within CCNA_00589at 617.992 kb on - strand, within CCNA_00589at 617.993 kb on - strand, within CCNA_00589at 618.002 kb on - strand, within CCNA_00589at 618.031 kb on + strand, within CCNA_00589at 618.037 kb on - strand, within CCNA_00589at 618.039 kb on - strand, within CCNA_00589at 618.066 kb on + strand, within CCNA_00589at 618.082 kb on - strand, within CCNA_00589at 618.117 kb on + strand, within CCNA_00589at 618.117 kb on + strand, within CCNA_00589at 618.125 kb on - strand, within CCNA_00589at 618.136 kb on + strand, within CCNA_00589at 618.157 kb on + strand, within CCNA_00589at 618.160 kb on + strand, within CCNA_00589at 618.172 kb on - strand, within CCNA_00589at 618.205 kb on - strand, within CCNA_00589at 618.218 kb on + strand, within CCNA_00589at 618.223 kb on + strand, within CCNA_00589at 618.231 kb on - strand, within CCNA_00589at 618.231 kb on - strand, within CCNA_00589at 618.247 kb on - strand, within CCNA_00589at 618.252 kb on - strand, within CCNA_00589at 618.312 kb on + strand, within CCNA_00589at 618.378 kb on - strand, within CCNA_00589at 618.386 kb on - strand, within CCNA_00589at 618.392 kb on + strand, within CCNA_00589at 618.510 kb on - strandat 618.520 kb on - strandat 618.545 kb on - strandat 618.545 kb on - strandat 618.546 kb on - strandat 618.546 kb on - strandat 618.546 kb on - strandat 618.546 kb on - strandat 618.551 kb on - strandat 618.575 kb on + strandat 618.595 kb on + strandat 618.601 kb on + strandat 618.611 kb on - strandat 618.627 kb on + strandat 618.670 kb on + strandat 618.670 kb on + strandat 618.670 kb on + strandat 618.670 kb on + strandat 618.670 kb on + strandat 618.670 kb on + strandat 618.678 kb on - strandat 618.678 kb on - strandat 618.678 kb on - strandat 618.678 kb on - strandat 618.678 kb on - strandat 618.678 kb on - strandat 618.678 kb on - strandat 618.678 kb on - strandat 618.694 kb on + strandat 618.701 kb on - strandat 618.733 kb on - strand, within CCNA_00590at 618.733 kb on - strand, within CCNA_00590at 618.797 kb on - strand, within CCNA_00590at 618.797 kb on - strand, within CCNA_00590at 618.807 kb on + strand, within CCNA_00590at 618.814 kb on + strand, within CCNA_00590at 618.822 kb on - strand, within CCNA_00590at 618.826 kb on + strand, within CCNA_00590at 618.838 kb on - strand, within CCNA_00590at 618.843 kb on + strand, within CCNA_00590

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.0001 mg/ml
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616,608 + +3.4
616,613 + CCNA_00587 0.45 -0.5
616,614 + CCNA_00587 0.45 +0.9
616,619 + CCNA_00587 0.46 -1.9
616,636 - CCNA_00587 0.47 -0.1
616,636 - CCNA_00587 0.47 +1.4
616,648 + CCNA_00587 0.48 -0.2
616,653 + CCNA_00587 0.48 -0.1
616,658 + CCNA_00587 0.48 -1.3
616,666 - CCNA_00587 0.49 -0.1
616,688 - CCNA_00587 0.50 -0.3
616,763 + CCNA_00587 0.55 -1.6
616,763 + CCNA_00587 0.55 +0.8
616,771 - CCNA_00587 0.56 -0.5
616,788 - CCNA_00587 0.57 +0.2
616,803 + CCNA_00587 0.58 -1.3
616,805 - CCNA_00587 0.58 -0.0
616,829 + CCNA_00587 0.60 -0.5
616,837 - CCNA_00587 0.60 -0.8
616,837 - CCNA_00587 0.60 -2.2
616,842 - CCNA_00587 0.61 +0.0
616,842 - CCNA_00587 0.61 +0.8
616,849 + CCNA_00587 0.61 -2.0
616,884 + CCNA_00587 0.63 -0.6
616,884 + CCNA_00587 0.63 -1.1
616,885 - CCNA_00587 0.64 -1.3
616,892 + CCNA_00587 0.64 +0.8
616,973 - CCNA_00587 0.69 +1.5
617,025 + CCNA_00587 0.73 -0.6
617,066 + CCNA_00587 0.76 -1.4
617,074 - CCNA_00587 0.76 -0.0
617,079 - CCNA_00587 0.76 -0.4
617,084 - CCNA_00587 0.77 +0.1
617,101 + CCNA_00587 0.78 +1.1
617,101 + CCNA_00587 0.78 -0.4
617,106 + CCNA_00587 0.78 -1.4
617,144 + CCNA_00587 0.81 +0.6
617,185 + CCNA_00587 0.84 -0.9
617,235 - CCNA_00587 0.87 +0.9
617,264 - CCNA_00587 0.89 -0.6
617,264 - CCNA_00587 0.89 +0.2
617,264 - CCNA_00587 0.89 +1.3
617,282 - -0.1
617,333 + +1.1
617,341 + +2.1
617,341 + -0.3
617,341 + +0.2
617,341 + -0.4
617,342 + -2.0
617,349 - -1.9
617,349 - -0.5
617,380 + -0.8
617,420 + -0.5
617,423 - +0.1
617,442 + -0.5
617,465 - -1.8
617,493 + +0.4
617,499 - -1.1
617,501 - -1.9
617,501 - -1.0
617,509 - -0.8
617,514 + -1.6
617,521 + +0.6
617,521 + -0.7
617,521 + -1.3
617,521 + +0.5
617,521 + -1.5
617,521 + -0.3
617,529 - -0.3
617,529 - -0.2
617,529 - -0.7
617,569 + -0.1
617,584 - -0.5
617,596 - -0.4
617,596 - -1.5
617,642 - CCNA_00588 0.16 +1.1
617,648 + CCNA_00588 0.18 -1.0
617,727 - CCNA_00588 0.51 -1.2
617,869 - -0.6
617,873 + -0.2
617,875 - +0.9
617,881 - -0.4
617,933 - CCNA_00589 0.11 +0.0
617,935 + CCNA_00589 0.12 -1.3
617,963 - CCNA_00589 0.16 +0.7
617,970 + CCNA_00589 0.17 +0.1
617,989 + CCNA_00589 0.19 -0.5
617,992 - CCNA_00589 0.20 -1.1
617,993 - CCNA_00589 0.20 +0.5
618,002 - CCNA_00589 0.21 +0.1
618,031 + CCNA_00589 0.25 -0.6
618,037 - CCNA_00589 0.26 -0.9
618,039 - CCNA_00589 0.26 +0.1
618,066 + CCNA_00589 0.30 -0.3
618,082 - CCNA_00589 0.32 +0.8
618,117 + CCNA_00589 0.37 -0.1
618,117 + CCNA_00589 0.37 -1.6
618,125 - CCNA_00589 0.38 +1.0
618,136 + CCNA_00589 0.40 +0.3
618,157 + CCNA_00589 0.43 +0.1
618,160 + CCNA_00589 0.43 -0.2
618,172 - CCNA_00589 0.45 +0.3
618,205 - CCNA_00589 0.49 -1.4
618,218 + CCNA_00589 0.51 -1.6
618,223 + CCNA_00589 0.52 -1.3
618,231 - CCNA_00589 0.53 -2.0
618,231 - CCNA_00589 0.53 +1.1
618,247 - CCNA_00589 0.55 -1.0
618,252 - CCNA_00589 0.56 -1.1
618,312 + CCNA_00589 0.64 -2.6
618,378 - CCNA_00589 0.74 -0.9
618,386 - CCNA_00589 0.75 -0.4
618,392 + CCNA_00589 0.75 -0.1
618,510 - -0.8
618,520 - -2.6
618,545 - -0.2
618,545 - -0.4
618,546 - -0.2
618,546 - +0.1
618,546 - -1.4
618,546 - +1.3
618,551 - -0.1
618,575 + +0.6
618,595 + -1.2
618,601 + +0.6
618,611 - -0.6
618,627 + -0.5
618,670 + -1.9
618,670 + +1.2
618,670 + +0.0
618,670 + -0.8
618,670 + +0.4
618,670 + +0.1
618,678 - +1.3
618,678 - -1.2
618,678 - +0.2
618,678 - -1.4
618,678 - +0.6
618,678 - +0.4
618,678 - +0.6
618,678 - -1.6
618,694 + +1.2
618,701 - +0.7
618,733 - CCNA_00590 0.11 +0.6
618,733 - CCNA_00590 0.11 -0.6
618,797 - CCNA_00590 0.16 +1.6
618,797 - CCNA_00590 0.16 -0.0
618,807 + CCNA_00590 0.17 +0.9
618,814 + CCNA_00590 0.18 +0.1
618,822 - CCNA_00590 0.19 +0.0
618,826 + CCNA_00590 0.19 +0.1
618,838 - CCNA_00590 0.20 +0.5
618,843 + CCNA_00590 0.21 +0.9

Or see this region's nucleotide sequence