Experiment: PYE with Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00578 and CCNA_00579 are separated by 176 nucleotides CCNA_00579 and CCNA_00580 are separated by 197 nucleotides
CCNA_00578: CCNA_00578 - family 67 glycosyl hydrolase protein, at 601,496 to 604,033
_00578
CCNA_00579: CCNA_00579 - endonuclease, at 604,210 to 606,009
_00579
CCNA_00580: CCNA_00580 - AAA ATPase domain protein, at 606,207 to 609,290
_00580
Position (kb) 604
605
606
607 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 603.220 kb on + strand, within CCNA_00578 at 603.234 kb on + strand, within CCNA_00578 at 603.254 kb on + strand, within CCNA_00578 at 603.254 kb on + strand, within CCNA_00578 at 603.262 kb on + strand, within CCNA_00578 at 603.275 kb on - strand, within CCNA_00578 at 603.337 kb on + strand, within CCNA_00578 at 603.337 kb on + strand, within CCNA_00578 at 603.345 kb on - strand, within CCNA_00578 at 603.345 kb on - strand, within CCNA_00578 at 603.401 kb on + strand, within CCNA_00578 at 603.419 kb on + strand, within CCNA_00578 at 603.476 kb on - strand, within CCNA_00578 at 603.577 kb on + strand, within CCNA_00578 at 603.577 kb on + strand, within CCNA_00578 at 603.625 kb on + strand, within CCNA_00578 at 603.625 kb on - strand, within CCNA_00578 at 603.661 kb on - strand, within CCNA_00578 at 603.677 kb on + strand, within CCNA_00578 at 603.678 kb on - strand, within CCNA_00578 at 603.707 kb on + strand, within CCNA_00578 at 603.707 kb on + strand, within CCNA_00578 at 603.715 kb on - strand, within CCNA_00578 at 603.757 kb on - strand, within CCNA_00578 at 603.790 kb on - strand at 603.790 kb on - strand at 603.801 kb on + strand at 603.809 kb on - strand at 603.827 kb on + strand at 603.835 kb on - strand at 603.835 kb on - strand at 603.835 kb on - strand at 603.863 kb on - strand at 603.868 kb on + strand at 603.874 kb on + strand at 603.882 kb on - strand at 603.882 kb on - strand at 603.882 kb on - strand at 603.882 kb on - strand at 603.882 kb on - strand at 603.882 kb on - strand at 603.882 kb on - strand at 603.882 kb on - strand at 603.882 kb on - strand at 603.884 kb on + strand at 603.884 kb on + strand at 603.884 kb on + strand at 603.884 kb on + strand at 603.884 kb on + strand at 603.884 kb on + strand at 603.892 kb on - strand at 603.948 kb on + strand at 603.965 kb on + strand at 603.999 kb on + strand at 604.014 kb on - strand at 604.046 kb on - strand at 604.084 kb on - strand at 604.240 kb on - strand at 604.247 kb on + strand at 604.251 kb on - strand at 604.266 kb on - strand at 604.317 kb on + strand at 604.325 kb on - strand at 604.325 kb on - strand at 604.325 kb on - strand at 604.327 kb on - strand at 604.389 kb on + strand at 604.389 kb on + strand at 604.399 kb on + strand, within CCNA_00579 at 604.417 kb on - strand, within CCNA_00579 at 604.456 kb on + strand, within CCNA_00579 at 604.457 kb on - strand, within CCNA_00579 at 604.464 kb on - strand, within CCNA_00579 at 604.486 kb on + strand, within CCNA_00579 at 604.486 kb on + strand, within CCNA_00579 at 604.496 kb on + strand, within CCNA_00579 at 604.496 kb on + strand, within CCNA_00579 at 604.535 kb on - strand, within CCNA_00579 at 604.557 kb on - strand, within CCNA_00579 at 604.638 kb on + strand, within CCNA_00579 at 604.646 kb on + strand, within CCNA_00579 at 604.673 kb on + strand, within CCNA_00579 at 604.673 kb on + strand, within CCNA_00579 at 604.681 kb on - strand, within CCNA_00579 at 604.681 kb on - strand, within CCNA_00579 at 604.681 kb on - strand, within CCNA_00579 at 604.684 kb on + strand, within CCNA_00579 at 604.704 kb on - strand, within CCNA_00579 at 604.712 kb on - strand, within CCNA_00579 at 604.720 kb on + strand, within CCNA_00579 at 604.762 kb on + strand, within CCNA_00579 at 604.770 kb on - strand, within CCNA_00579 at 604.796 kb on + strand, within CCNA_00579 at 604.811 kb on + strand, within CCNA_00579 at 604.811 kb on + strand, within CCNA_00579 at 604.826 kb on - strand, within CCNA_00579 at 604.837 kb on + strand, within CCNA_00579 at 604.855 kb on + strand, within CCNA_00579 at 604.880 kb on + strand, within CCNA_00579 at 604.880 kb on + strand, within CCNA_00579 at 604.918 kb on - strand, within CCNA_00579 at 604.935 kb on + strand, within CCNA_00579 at 604.935 kb on + strand, within CCNA_00579 at 604.935 kb on + strand, within CCNA_00579 at 604.942 kb on - strand, within CCNA_00579 at 604.954 kb on - strand, within CCNA_00579 at 604.988 kb on - strand, within CCNA_00579 at 604.993 kb on + strand, within CCNA_00579 at 605.017 kb on + strand, within CCNA_00579 at 605.017 kb on + strand, within CCNA_00579 at 605.022 kb on + strand, within CCNA_00579 at 605.022 kb on + strand, within CCNA_00579 at 605.030 kb on - strand, within CCNA_00579 at 605.091 kb on + strand, within CCNA_00579 at 605.092 kb on + strand, within CCNA_00579 at 605.092 kb on + strand, within CCNA_00579 at 605.094 kb on - strand, within CCNA_00579 at 605.100 kb on - strand, within CCNA_00579 at 605.100 kb on - strand, within CCNA_00579 at 605.100 kb on - strand, within CCNA_00579 at 605.148 kb on + strand, within CCNA_00579 at 605.179 kb on - strand, within CCNA_00579 at 605.184 kb on - strand, within CCNA_00579 at 605.236 kb on + strand, within CCNA_00579 at 605.244 kb on - strand, within CCNA_00579 at 605.248 kb on + strand, within CCNA_00579 at 605.248 kb on + strand, within CCNA_00579 at 605.263 kb on + strand, within CCNA_00579 at 605.263 kb on + strand, within CCNA_00579 at 605.263 kb on + strand, within CCNA_00579 at 605.263 kb on + strand, within CCNA_00579 at 605.263 kb on + strand, within CCNA_00579 at 605.271 kb on - strand, within CCNA_00579 at 605.271 kb on - strand, within CCNA_00579 at 605.271 kb on - strand, within CCNA_00579 at 605.286 kb on + strand, within CCNA_00579 at 605.286 kb on + strand, within CCNA_00579 at 605.291 kb on + strand, within CCNA_00579 at 605.294 kb on - strand, within CCNA_00579 at 605.294 kb on - strand at 605.296 kb on + strand, within CCNA_00579 at 605.296 kb on + strand, within CCNA_00579 at 605.304 kb on - strand, within CCNA_00579 at 605.304 kb on - strand, within CCNA_00579 at 605.351 kb on + strand, within CCNA_00579 at 605.379 kb on - strand, within CCNA_00579 at 605.402 kb on - strand, within CCNA_00579 at 605.409 kb on + strand, within CCNA_00579 at 605.417 kb on - strand, within CCNA_00579 at 605.425 kb on + strand, within CCNA_00579 at 605.455 kb on - strand, within CCNA_00579 at 605.460 kb on + strand, within CCNA_00579 at 605.495 kb on - strand at 605.528 kb on + strand, within CCNA_00579 at 605.528 kb on + strand, within CCNA_00579 at 605.543 kb on + strand, within CCNA_00579 at 605.543 kb on + strand, within CCNA_00579 at 605.561 kb on + strand, within CCNA_00579 at 605.563 kb on - strand, within CCNA_00579 at 605.569 kb on - strand, within CCNA_00579 at 605.597 kb on + strand, within CCNA_00579 at 605.605 kb on + strand, within CCNA_00579 at 605.613 kb on - strand, within CCNA_00579 at 605.634 kb on + strand, within CCNA_00579 at 605.636 kb on + strand, within CCNA_00579 at 605.644 kb on - strand, within CCNA_00579 at 605.661 kb on + strand, within CCNA_00579 at 605.693 kb on + strand, within CCNA_00579 at 605.695 kb on + strand, within CCNA_00579 at 605.695 kb on + strand, within CCNA_00579 at 605.703 kb on - strand, within CCNA_00579 at 605.726 kb on - strand, within CCNA_00579 at 605.732 kb on + strand, within CCNA_00579 at 605.751 kb on + strand, within CCNA_00579 at 605.759 kb on - strand, within CCNA_00579 at 605.759 kb on - strand, within CCNA_00579 at 605.800 kb on + strand, within CCNA_00579 at 605.800 kb on + strand, within CCNA_00579 at 605.800 kb on + strand, within CCNA_00579 at 605.821 kb on + strand, within CCNA_00579 at 605.827 kb on + strand, within CCNA_00579 at 605.846 kb on + strand at 605.866 kb on + strand at 605.885 kb on + strand at 605.885 kb on + strand at 605.885 kb on + strand at 605.885 kb on + strand at 605.885 kb on + strand at 605.885 kb on + strand at 605.885 kb on + strand at 605.893 kb on - strand at 605.893 kb on - strand at 605.926 kb on - strand at 605.938 kb on + strand at 605.946 kb on - strand at 605.951 kb on + strand at 605.970 kb on - strand at 606.026 kb on + strand at 606.044 kb on - strand at 606.061 kb on + strand at 606.061 kb on + strand at 606.061 kb on + strand at 606.069 kb on - strand at 606.081 kb on + strand at 606.084 kb on - strand at 606.096 kb on + strand at 606.146 kb on + strand at 606.151 kb on + strand at 606.151 kb on + strand at 606.192 kb on + strand at 606.192 kb on + strand at 606.224 kb on - strand at 606.359 kb on - strand at 606.367 kb on + strand at 606.394 kb on + strand at 606.439 kb on + strand at 606.447 kb on - strand at 606.462 kb on + strand at 606.602 kb on + strand, within CCNA_00580 at 606.602 kb on + strand, within CCNA_00580 at 606.662 kb on - strand, within CCNA_00580 at 606.709 kb on + strand, within CCNA_00580 at 606.711 kb on - strand, within CCNA_00580 at 606.717 kb on - strand, within CCNA_00580 at 606.781 kb on - strand, within CCNA_00580 at 606.791 kb on + strand, within CCNA_00580 at 606.892 kb on - strand, within CCNA_00580 at 606.892 kb on - strand, within CCNA_00580 at 606.908 kb on + strand, within CCNA_00580 at 606.915 kb on + strand, within CCNA_00580 at 606.915 kb on + strand, within CCNA_00580 at 606.915 kb on + strand, within CCNA_00580 at 606.915 kb on + strand at 606.915 kb on + strand, within CCNA_00580 at 606.922 kb on + strand, within CCNA_00580 at 606.923 kb on - strand, within CCNA_00580 at 606.923 kb on - strand, within CCNA_00580 at 606.923 kb on - strand, within CCNA_00580 at 606.923 kb on - strand, within CCNA_00580 at 606.924 kb on + strand, within CCNA_00580
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.0001 mg/ml remove 603,220 + CCNA_00578 0.68 +2.0 603,234 + CCNA_00578 0.68 -0.7 603,254 + CCNA_00578 0.69 -1.5 603,254 + CCNA_00578 0.69 +1.4 603,262 + CCNA_00578 0.70 +0.8 603,275 - CCNA_00578 0.70 +0.5 603,337 + CCNA_00578 0.73 -1.0 603,337 + CCNA_00578 0.73 -0.1 603,345 - CCNA_00578 0.73 -1.0 603,345 - CCNA_00578 0.73 -1.6 603,401 + CCNA_00578 0.75 -1.4 603,419 + CCNA_00578 0.76 -1.8 603,476 - CCNA_00578 0.78 -2.2 603,577 + CCNA_00578 0.82 +0.3 603,577 + CCNA_00578 0.82 -0.0 603,625 + CCNA_00578 0.84 -0.5 603,625 - CCNA_00578 0.84 +0.7 603,661 - CCNA_00578 0.85 -0.4 603,677 + CCNA_00578 0.86 -2.2 603,678 - CCNA_00578 0.86 +0.0 603,707 + CCNA_00578 0.87 +0.0 603,707 + CCNA_00578 0.87 -0.3 603,715 - CCNA_00578 0.87 -0.1 603,757 - CCNA_00578 0.89 +0.4 603,790 - -0.4 603,790 - +0.2 603,801 + +0.9 603,809 - -2.4 603,827 + -1.6 603,835 - -1.4 603,835 - -0.3 603,835 - -1.7 603,863 - +0.5 603,868 + +0.6 603,874 + -0.5 603,882 - +1.6 603,882 - -0.7 603,882 - +0.9 603,882 - -1.3 603,882 - +0.5 603,882 - +2.0 603,882 - -1.6 603,882 - +0.3 603,882 - -1.0 603,884 + +0.4 603,884 + -0.1 603,884 + -1.1 603,884 + -0.1 603,884 + +0.4 603,884 + +0.4 603,892 - +0.5 603,948 + -0.6 603,965 + +0.1 603,999 + +0.1 604,014 - -0.2 604,046 - +1.8 604,084 - -2.4 604,240 - +0.3 604,247 + +0.1 604,251 - -0.1 604,266 - +0.6 604,317 + +0.5 604,325 - -0.3 604,325 - -0.2 604,325 - -1.2 604,327 - -0.6 604,389 + -0.2 604,389 + +0.4 604,399 + CCNA_00579 0.10 +0.2 604,417 - CCNA_00579 0.12 -0.4 604,456 + CCNA_00579 0.14 -1.1 604,457 - CCNA_00579 0.14 -0.8 604,464 - CCNA_00579 0.14 -1.0 604,486 + CCNA_00579 0.15 +0.6 604,486 + CCNA_00579 0.15 +0.4 604,496 + CCNA_00579 0.16 -0.8 604,496 + CCNA_00579 0.16 -1.0 604,535 - CCNA_00579 0.18 +0.0 604,557 - CCNA_00579 0.19 +0.1 604,638 + CCNA_00579 0.24 -0.7 604,646 + CCNA_00579 0.24 -1.9 604,673 + CCNA_00579 0.26 -2.2 604,673 + CCNA_00579 0.26 -1.3 604,681 - CCNA_00579 0.26 -1.1 604,681 - CCNA_00579 0.26 +0.4 604,681 - CCNA_00579 0.26 -0.2 604,684 + CCNA_00579 0.26 -0.4 604,704 - CCNA_00579 0.27 -1.2 604,712 - CCNA_00579 0.28 -0.3 604,720 + CCNA_00579 0.28 -1.0 604,762 + CCNA_00579 0.31 +0.7 604,770 - CCNA_00579 0.31 -0.8 604,796 + CCNA_00579 0.33 -0.5 604,811 + CCNA_00579 0.33 +0.3 604,811 + CCNA_00579 0.33 -0.3 604,826 - CCNA_00579 0.34 -1.0 604,837 + CCNA_00579 0.35 -0.1 604,855 + CCNA_00579 0.36 -1.5 604,880 + CCNA_00579 0.37 +0.4 604,880 + CCNA_00579 0.37 -0.4 604,918 - CCNA_00579 0.39 -0.4 604,935 + CCNA_00579 0.40 -0.8 604,935 + CCNA_00579 0.40 +1.0 604,935 + CCNA_00579 0.40 -0.9 604,942 - CCNA_00579 0.41 -0.3 604,954 - CCNA_00579 0.41 -0.4 604,988 - CCNA_00579 0.43 -0.2 604,993 + CCNA_00579 0.43 -0.2 605,017 + CCNA_00579 0.45 +0.0 605,017 + CCNA_00579 0.45 -1.6 605,022 + CCNA_00579 0.45 -0.8 605,022 + CCNA_00579 0.45 +1.1 605,030 - CCNA_00579 0.46 +0.0 605,091 + CCNA_00579 0.49 -0.2 605,092 + CCNA_00579 0.49 +0.2 605,092 + CCNA_00579 0.49 +0.5 605,094 - CCNA_00579 0.49 -0.7 605,100 - CCNA_00579 0.49 -0.3 605,100 - CCNA_00579 0.49 -0.1 605,100 - CCNA_00579 0.49 -0.3 605,148 + CCNA_00579 0.52 +1.4 605,179 - CCNA_00579 0.54 +0.9 605,184 - CCNA_00579 0.54 -1.6 605,236 + CCNA_00579 0.57 -0.1 605,244 - CCNA_00579 0.57 +0.9 605,248 + CCNA_00579 0.58 -1.5 605,248 + CCNA_00579 0.58 +0.9 605,263 + CCNA_00579 0.58 +0.2 605,263 + CCNA_00579 0.58 -0.5 605,263 + CCNA_00579 0.58 +0.8 605,263 + CCNA_00579 0.58 -2.1 605,263 + CCNA_00579 0.58 -1.3 605,271 - CCNA_00579 0.59 -0.7 605,271 - CCNA_00579 0.59 +1.0 605,271 - CCNA_00579 0.59 +0.2 605,286 + CCNA_00579 0.60 +0.0 605,286 + CCNA_00579 0.60 -0.3 605,291 + CCNA_00579 0.60 -0.7 605,294 - CCNA_00579 0.60 -2.9 605,294 - +1.4 605,296 + CCNA_00579 0.60 -1.2 605,296 + CCNA_00579 0.60 +1.3 605,304 - CCNA_00579 0.61 +0.4 605,304 - CCNA_00579 0.61 +0.3 605,351 + CCNA_00579 0.63 +2.9 605,379 - CCNA_00579 0.65 -1.5 605,402 - CCNA_00579 0.66 -0.2 605,409 + CCNA_00579 0.67 -1.4 605,417 - CCNA_00579 0.67 -0.4 605,425 + CCNA_00579 0.68 -0.2 605,455 - CCNA_00579 0.69 +0.8 605,460 + CCNA_00579 0.69 -0.3 605,495 - +2.4 605,528 + CCNA_00579 0.73 -1.4 605,528 + CCNA_00579 0.73 -0.4 605,543 + CCNA_00579 0.74 +0.7 605,543 + CCNA_00579 0.74 -0.2 605,561 + CCNA_00579 0.75 +0.4 605,563 - CCNA_00579 0.75 +0.1 605,569 - CCNA_00579 0.76 -2.1 605,597 + CCNA_00579 0.77 +0.0 605,605 + CCNA_00579 0.78 -2.0 605,613 - CCNA_00579 0.78 -2.1 605,634 + CCNA_00579 0.79 +0.5 605,636 + CCNA_00579 0.79 -0.8 605,644 - CCNA_00579 0.80 -0.3 605,661 + CCNA_00579 0.81 -1.3 605,693 + CCNA_00579 0.82 +0.7 605,695 + CCNA_00579 0.82 +0.1 605,695 + CCNA_00579 0.82 +1.3 605,703 - CCNA_00579 0.83 +1.2 605,726 - CCNA_00579 0.84 -1.5 605,732 + CCNA_00579 0.85 -1.5 605,751 + CCNA_00579 0.86 -0.7 605,759 - CCNA_00579 0.86 +1.7 605,759 - CCNA_00579 0.86 +0.2 605,800 + CCNA_00579 0.88 -1.5 605,800 + CCNA_00579 0.88 +0.8 605,800 + CCNA_00579 0.88 -1.1 605,821 + CCNA_00579 0.90 -0.9 605,827 + CCNA_00579 0.90 -0.8 605,846 + +1.8 605,866 + -0.6 605,885 + -0.7 605,885 + +0.2 605,885 + -0.7 605,885 + +0.3 605,885 + -1.3 605,885 + -1.4 605,885 + -0.3 605,893 - +0.8 605,893 - +1.2 605,926 - +0.0 605,938 + -1.1 605,946 - -0.9 605,951 + -1.2 605,970 - -0.2 606,026 + -0.4 606,044 - -1.6 606,061 + -1.1 606,061 + -0.5 606,061 + -0.1 606,069 - +1.3 606,081 + -2.3 606,084 - -2.0 606,096 + -0.3 606,146 + -0.5 606,151 + -0.6 606,151 + -0.6 606,192 + -0.2 606,192 + -0.7 606,224 - +1.0 606,359 - -1.3 606,367 + -0.6 606,394 + +0.0 606,439 + +0.7 606,447 - -0.3 606,462 + -2.4 606,602 + CCNA_00580 0.13 -0.9 606,602 + CCNA_00580 0.13 -1.1 606,662 - CCNA_00580 0.15 +0.4 606,709 + CCNA_00580 0.16 +1.0 606,711 - CCNA_00580 0.16 -1.5 606,717 - CCNA_00580 0.17 -0.4 606,781 - CCNA_00580 0.19 -0.4 606,791 + CCNA_00580 0.19 +0.7 606,892 - CCNA_00580 0.22 -1.4 606,892 - CCNA_00580 0.22 -1.5 606,908 + CCNA_00580 0.23 +0.1 606,915 + CCNA_00580 0.23 +1.4 606,915 + CCNA_00580 0.23 -0.6 606,915 + CCNA_00580 0.23 -1.1 606,915 + +1.0 606,915 + CCNA_00580 0.23 -0.5 606,922 + CCNA_00580 0.23 -1.1 606,923 - CCNA_00580 0.23 -1.2 606,923 - CCNA_00580 0.23 +0.1 606,923 - CCNA_00580 0.23 -0.2 606,923 - CCNA_00580 0.23 -0.3 606,924 + CCNA_00580 0.23 +0.0
Or see this region's nucleotide sequence