Experiment: PYE with Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00483 and CCNA_00484 are separated by 89 nucleotides CCNA_00484 and CCNA_00485 are separated by 98 nucleotides CCNA_00485 and CCNA_00486 are separated by 92 nucleotides
CCNA_00483: CCNA_00483 - Zn-dependent hydrolase, glyoxalase II family, at 499,379 to 500,224
_00483
CCNA_00484: CCNA_00484 - hypothetical protein, at 500,314 to 501,015
_00484
CCNA_00485: CCNA_00485 - ribosomal large subunit pseudouridine synthase D, at 501,114 to 502,142
_00485
CCNA_00486: CCNA_00486 - TonB-dependent receptor, at 502,235 to 504,724
_00486
Position (kb) 501
502
503 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 500.140 kb on + strand at 500.216 kb on - strand at 500.228 kb on + strand at 500.270 kb on + strand at 500.343 kb on + strand at 500.363 kb on + strand at 500.363 kb on + strand at 500.364 kb on + strand at 500.371 kb on - strand at 500.374 kb on + strand at 500.434 kb on + strand, within CCNA_00484 at 500.441 kb on + strand at 500.455 kb on + strand, within CCNA_00484 at 500.503 kb on + strand, within CCNA_00484 at 500.521 kb on + strand, within CCNA_00484 at 500.521 kb on + strand, within CCNA_00484 at 500.529 kb on - strand, within CCNA_00484 at 500.553 kb on - strand, within CCNA_00484 at 500.614 kb on + strand, within CCNA_00484 at 500.716 kb on + strand, within CCNA_00484 at 500.724 kb on - strand, within CCNA_00484 at 500.754 kb on - strand, within CCNA_00484 at 500.777 kb on + strand, within CCNA_00484 at 500.825 kb on - strand, within CCNA_00484 at 500.825 kb on - strand, within CCNA_00484 at 500.849 kb on + strand, within CCNA_00484 at 500.856 kb on - strand, within CCNA_00484 at 500.902 kb on + strand, within CCNA_00484 at 500.902 kb on + strand, within CCNA_00484 at 500.910 kb on - strand, within CCNA_00484 at 500.910 kb on - strand, within CCNA_00484 at 500.939 kb on - strand, within CCNA_00484 at 500.979 kb on - strand at 501.002 kb on + strand at 501.010 kb on - strand at 501.046 kb on - strand at 501.050 kb on + strand at 501.054 kb on - strand at 501.059 kb on - strand at 501.073 kb on - strand at 501.096 kb on + strand at 501.103 kb on - strand at 501.103 kb on - strand at 501.103 kb on - strand at 501.104 kb on - strand at 501.120 kb on - strand at 501.134 kb on + strand at 501.134 kb on + strand at 501.134 kb on + strand at 501.134 kb on + strand at 501.134 kb on + strand at 501.134 kb on + strand at 501.134 kb on + strand at 501.134 kb on + strand at 501.142 kb on - strand at 501.142 kb on - strand at 501.142 kb on - strand at 501.142 kb on - strand at 501.142 kb on - strand at 501.142 kb on - strand at 501.142 kb on - strand at 501.142 kb on - strand at 501.142 kb on - strand at 501.142 kb on - strand at 501.142 kb on - strand at 501.161 kb on + strand at 501.179 kb on + strand at 501.207 kb on + strand at 501.207 kb on + strand at 501.207 kb on + strand at 501.207 kb on + strand at 501.208 kb on - strand at 501.215 kb on + strand at 501.215 kb on - strand at 501.217 kb on + strand, within CCNA_00485 at 501.234 kb on + strand, within CCNA_00485 at 501.263 kb on + strand, within CCNA_00485 at 501.305 kb on + strand, within CCNA_00485 at 501.305 kb on + strand, within CCNA_00485 at 501.305 kb on + strand, within CCNA_00485 at 501.345 kb on + strand, within CCNA_00485 at 501.345 kb on + strand, within CCNA_00485 at 501.345 kb on + strand, within CCNA_00485 at 501.409 kb on + strand, within CCNA_00485 at 501.419 kb on - strand, within CCNA_00485 at 501.427 kb on + strand, within CCNA_00485 at 501.427 kb on + strand, within CCNA_00485 at 501.429 kb on - strand, within CCNA_00485 at 501.430 kb on - strand, within CCNA_00485 at 501.435 kb on - strand, within CCNA_00485 at 501.435 kb on - strand, within CCNA_00485 at 501.435 kb on - strand, within CCNA_00485 at 501.435 kb on - strand, within CCNA_00485 at 501.440 kb on - strand, within CCNA_00485 at 501.440 kb on - strand, within CCNA_00485 at 501.488 kb on + strand, within CCNA_00485 at 501.496 kb on - strand, within CCNA_00485 at 501.511 kb on + strand, within CCNA_00485 at 501.513 kb on - strand, within CCNA_00485 at 501.549 kb on + strand, within CCNA_00485 at 501.549 kb on + strand, within CCNA_00485 at 501.549 kb on + strand, within CCNA_00485 at 501.549 kb on + strand, within CCNA_00485 at 501.557 kb on - strand, within CCNA_00485 at 501.557 kb on - strand, within CCNA_00485 at 501.557 kb on - strand, within CCNA_00485 at 501.557 kb on - strand, within CCNA_00485 at 501.559 kb on + strand, within CCNA_00485 at 501.559 kb on + strand, within CCNA_00485 at 501.559 kb on + strand, within CCNA_00485 at 501.559 kb on + strand, within CCNA_00485 at 501.559 kb on + strand, within CCNA_00485 at 501.559 kb on + strand, within CCNA_00485 at 501.559 kb on + strand, within CCNA_00485 at 501.559 kb on + strand, within CCNA_00485 at 501.559 kb on + strand, within CCNA_00485 at 501.559 kb on + strand, within CCNA_00485 at 501.567 kb on - strand, within CCNA_00485 at 501.567 kb on - strand, within CCNA_00485 at 501.567 kb on - strand, within CCNA_00485 at 501.567 kb on - strand, within CCNA_00485 at 501.591 kb on - strand, within CCNA_00485 at 501.591 kb on - strand, within CCNA_00485 at 501.601 kb on - strand, within CCNA_00485 at 501.606 kb on + strand, within CCNA_00485 at 501.641 kb on + strand, within CCNA_00485 at 501.641 kb on + strand, within CCNA_00485 at 501.649 kb on - strand, within CCNA_00485 at 501.649 kb on - strand, within CCNA_00485 at 501.673 kb on + strand, within CCNA_00485 at 501.673 kb on + strand, within CCNA_00485 at 501.681 kb on - strand, within CCNA_00485 at 501.681 kb on - strand, within CCNA_00485 at 501.681 kb on - strand, within CCNA_00485 at 501.715 kb on + strand, within CCNA_00485 at 501.731 kb on - strand, within CCNA_00485 at 501.733 kb on + strand, within CCNA_00485 at 501.733 kb on + strand, within CCNA_00485 at 501.741 kb on - strand, within CCNA_00485 at 501.741 kb on - strand, within CCNA_00485 at 501.741 kb on - strand, within CCNA_00485 at 501.741 kb on - strand, within CCNA_00485 at 501.741 kb on - strand, within CCNA_00485 at 501.741 kb on - strand, within CCNA_00485 at 501.748 kb on + strand, within CCNA_00485 at 501.790 kb on + strand, within CCNA_00485 at 501.795 kb on + strand, within CCNA_00485 at 501.795 kb on + strand, within CCNA_00485 at 501.798 kb on - strand, within CCNA_00485 at 501.802 kb on + strand, within CCNA_00485 at 501.817 kb on + strand, within CCNA_00485 at 501.817 kb on - strand, within CCNA_00485 at 501.837 kb on + strand, within CCNA_00485 at 501.881 kb on + strand, within CCNA_00485 at 501.887 kb on + strand, within CCNA_00485 at 501.891 kb on + strand, within CCNA_00485 at 501.929 kb on - strand, within CCNA_00485 at 501.939 kb on + strand, within CCNA_00485 at 501.945 kb on + strand, within CCNA_00485 at 501.963 kb on + strand, within CCNA_00485 at 501.970 kb on + strand, within CCNA_00485 at 501.972 kb on - strand, within CCNA_00485 at 501.994 kb on + strand, within CCNA_00485 at 502.015 kb on + strand, within CCNA_00485 at 502.029 kb on - strand, within CCNA_00485 at 502.052 kb on + strand at 502.052 kb on + strand at 502.052 kb on + strand at 502.052 kb on + strand at 502.053 kb on + strand at 502.060 kb on - strand at 502.060 kb on - strand at 502.060 kb on - strand at 502.060 kb on - strand at 502.065 kb on + strand at 502.065 kb on - strand at 502.065 kb on - strand at 502.072 kb on + strand at 502.072 kb on + strand at 502.125 kb on + strand at 502.150 kb on + strand at 502.165 kb on - strand at 502.192 kb on + strand at 502.200 kb on - strand at 502.239 kb on - strand at 502.252 kb on - strand at 502.261 kb on + strand at 502.264 kb on - strand at 502.264 kb on - strand at 502.269 kb on - strand at 502.275 kb on + strand at 502.282 kb on - strand at 502.282 kb on - strand at 502.282 kb on - strand at 502.282 kb on - strand at 502.282 kb on - strand at 502.282 kb on - strand at 502.283 kb on - strand at 502.283 kb on - strand at 502.295 kb on + strand at 502.303 kb on - strand at 502.304 kb on - strand at 502.319 kb on - strand at 502.344 kb on + strand at 502.344 kb on + strand at 502.344 kb on + strand at 502.354 kb on + strand at 502.362 kb on - strand at 502.362 kb on - strand at 502.366 kb on + strand at 502.376 kb on + strand at 502.446 kb on - strand at 502.474 kb on + strand at 502.502 kb on + strand, within CCNA_00486 at 502.538 kb on - strand, within CCNA_00486 at 502.558 kb on - strand at 502.574 kb on + strand, within CCNA_00486 at 502.574 kb on + strand, within CCNA_00486 at 502.706 kb on + strand, within CCNA_00486 at 502.711 kb on + strand, within CCNA_00486 at 502.714 kb on - strand, within CCNA_00486 at 502.719 kb on - strand, within CCNA_00486 at 502.738 kb on - strand, within CCNA_00486 at 502.743 kb on - strand, within CCNA_00486 at 502.748 kb on - strand, within CCNA_00486 at 502.754 kb on + strand, within CCNA_00486 at 502.755 kb on + strand, within CCNA_00486 at 502.755 kb on + strand, within CCNA_00486 at 502.755 kb on + strand, within CCNA_00486 at 502.819 kb on - strand, within CCNA_00486 at 502.919 kb on - strand, within CCNA_00486 at 502.954 kb on - strand, within CCNA_00486 at 502.954 kb on - strand, within CCNA_00486 at 502.956 kb on - strand, within CCNA_00486 at 502.974 kb on + strand, within CCNA_00486 at 502.976 kb on - strand, within CCNA_00486 at 502.979 kb on + strand, within CCNA_00486 at 502.982 kb on - strand, within CCNA_00486 at 502.982 kb on - strand, within CCNA_00486 at 502.984 kb on + strand, within CCNA_00486 at 503.001 kb on - strand, within CCNA_00486 at 503.031 kb on + strand, within CCNA_00486 at 503.037 kb on + strand, within CCNA_00486 at 503.107 kb on + strand, within CCNA_00486 at 503.110 kb on - strand, within CCNA_00486 at 503.115 kb on - strand, within CCNA_00486 at 503.120 kb on + strand, within CCNA_00486 at 503.129 kb on - strand, within CCNA_00486 at 503.140 kb on + strand, within CCNA_00486
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.0001 mg/ml remove 500,140 + -1.1 500,216 - -0.1 500,228 + -0.4 500,270 + -1.0 500,343 + +0.4 500,363 + -1.6 500,363 + +0.6 500,364 + -0.6 500,371 - -0.7 500,374 + -1.0 500,434 + CCNA_00484 0.17 -1.0 500,441 + +0.9 500,455 + CCNA_00484 0.20 -2.2 500,503 + CCNA_00484 0.27 -1.0 500,521 + CCNA_00484 0.29 -1.1 500,521 + CCNA_00484 0.29 -0.0 500,529 - CCNA_00484 0.31 +0.6 500,553 - CCNA_00484 0.34 +0.2 500,614 + CCNA_00484 0.43 -0.8 500,716 + CCNA_00484 0.57 -0.2 500,724 - CCNA_00484 0.58 +0.2 500,754 - CCNA_00484 0.63 +0.5 500,777 + CCNA_00484 0.66 +0.9 500,825 - CCNA_00484 0.73 -0.4 500,825 - CCNA_00484 0.73 +1.4 500,849 + CCNA_00484 0.76 -0.7 500,856 - CCNA_00484 0.77 +0.6 500,902 + CCNA_00484 0.84 -0.2 500,902 + CCNA_00484 0.84 -1.8 500,910 - CCNA_00484 0.85 +1.0 500,910 - CCNA_00484 0.85 +1.9 500,939 - CCNA_00484 0.89 +0.5 500,979 - -0.8 501,002 + -0.5 501,010 - -0.5 501,046 - +0.9 501,050 + -1.3 501,054 - +0.5 501,059 - -0.7 501,073 - -1.7 501,096 + +1.5 501,103 - +0.3 501,103 - -1.2 501,103 - -0.9 501,104 - -2.2 501,120 - -0.4 501,134 + -0.7 501,134 + -0.3 501,134 + -2.0 501,134 + +0.0 501,134 + -3.3 501,134 + -4.3 501,134 + -2.9 501,134 + -0.9 501,142 - -1.2 501,142 - -1.3 501,142 - -0.3 501,142 - +0.4 501,142 - -1.5 501,142 - -2.0 501,142 - -0.6 501,142 - -1.0 501,142 - -0.3 501,142 - -0.2 501,142 - -1.6 501,161 + -1.1 501,179 + -2.7 501,207 + -1.4 501,207 + -2.7 501,207 + -2.9 501,207 + -1.0 501,208 - -1.5 501,215 + -2.0 501,215 - -1.9 501,217 + CCNA_00485 0.10 -2.3 501,234 + CCNA_00485 0.12 -1.5 501,263 + CCNA_00485 0.14 -1.0 501,305 + CCNA_00485 0.19 -2.1 501,305 + CCNA_00485 0.19 -1.7 501,305 + CCNA_00485 0.19 -2.6 501,345 + CCNA_00485 0.22 -0.9 501,345 + CCNA_00485 0.22 -2.8 501,345 + CCNA_00485 0.22 -1.9 501,409 + CCNA_00485 0.29 -1.5 501,419 - CCNA_00485 0.30 -1.0 501,427 + CCNA_00485 0.30 -1.3 501,427 + CCNA_00485 0.30 -2.1 501,429 - CCNA_00485 0.31 -1.0 501,430 - CCNA_00485 0.31 -1.3 501,435 - CCNA_00485 0.31 +0.8 501,435 - CCNA_00485 0.31 -1.2 501,435 - CCNA_00485 0.31 +0.9 501,435 - CCNA_00485 0.31 -3.0 501,440 - CCNA_00485 0.32 -3.1 501,440 - CCNA_00485 0.32 -1.7 501,488 + CCNA_00485 0.36 -0.3 501,496 - CCNA_00485 0.37 -2.8 501,511 + CCNA_00485 0.39 -1.0 501,513 - CCNA_00485 0.39 -0.9 501,549 + CCNA_00485 0.42 -1.0 501,549 + CCNA_00485 0.42 +1.2 501,549 + CCNA_00485 0.42 -1.0 501,549 + CCNA_00485 0.42 -2.5 501,557 - CCNA_00485 0.43 -0.9 501,557 - CCNA_00485 0.43 -1.0 501,557 - CCNA_00485 0.43 +2.0 501,557 - CCNA_00485 0.43 -1.9 501,559 + CCNA_00485 0.43 -1.5 501,559 + CCNA_00485 0.43 -2.2 501,559 + CCNA_00485 0.43 -0.8 501,559 + CCNA_00485 0.43 +0.2 501,559 + CCNA_00485 0.43 -1.4 501,559 + CCNA_00485 0.43 +2.2 501,559 + CCNA_00485 0.43 -0.9 501,559 + CCNA_00485 0.43 -2.3 501,559 + CCNA_00485 0.43 -1.0 501,559 + CCNA_00485 0.43 +1.7 501,567 - CCNA_00485 0.44 -2.7 501,567 - CCNA_00485 0.44 -0.6 501,567 - CCNA_00485 0.44 -2.6 501,567 - CCNA_00485 0.44 -2.8 501,591 - CCNA_00485 0.46 -2.4 501,591 - CCNA_00485 0.46 -0.4 501,601 - CCNA_00485 0.47 -1.7 501,606 + CCNA_00485 0.48 +0.2 501,641 + CCNA_00485 0.51 -2.6 501,641 + CCNA_00485 0.51 -1.6 501,649 - CCNA_00485 0.52 -2.5 501,649 - CCNA_00485 0.52 -2.2 501,673 + CCNA_00485 0.54 -0.3 501,673 + CCNA_00485 0.54 -0.3 501,681 - CCNA_00485 0.55 -1.3 501,681 - CCNA_00485 0.55 -1.0 501,681 - CCNA_00485 0.55 -0.4 501,715 + CCNA_00485 0.58 -1.5 501,731 - CCNA_00485 0.60 -1.1 501,733 + CCNA_00485 0.60 -1.6 501,733 + CCNA_00485 0.60 +0.4 501,741 - CCNA_00485 0.61 -1.2 501,741 - CCNA_00485 0.61 -1.0 501,741 - CCNA_00485 0.61 -1.3 501,741 - CCNA_00485 0.61 -0.9 501,741 - CCNA_00485 0.61 -1.5 501,741 - CCNA_00485 0.61 -1.7 501,748 + CCNA_00485 0.62 -1.9 501,790 + CCNA_00485 0.66 -0.5 501,795 + CCNA_00485 0.66 -0.4 501,795 + CCNA_00485 0.66 -2.6 501,798 - CCNA_00485 0.66 -2.8 501,802 + CCNA_00485 0.67 -3.1 501,817 + CCNA_00485 0.68 -3.1 501,817 - CCNA_00485 0.68 -0.6 501,837 + CCNA_00485 0.70 -1.1 501,881 + CCNA_00485 0.75 -1.2 501,887 + CCNA_00485 0.75 +0.6 501,891 + CCNA_00485 0.76 -1.5 501,929 - CCNA_00485 0.79 -2.8 501,939 + CCNA_00485 0.80 -1.0 501,945 + CCNA_00485 0.81 -1.7 501,963 + CCNA_00485 0.83 -1.3 501,970 + CCNA_00485 0.83 -1.1 501,972 - CCNA_00485 0.83 -2.2 501,994 + CCNA_00485 0.86 +0.2 502,015 + CCNA_00485 0.88 -1.2 502,029 - CCNA_00485 0.89 -0.3 502,052 + -1.2 502,052 + -1.9 502,052 + -0.1 502,052 + -0.6 502,053 + +0.8 502,060 - -1.3 502,060 - -1.3 502,060 - +0.2 502,060 - -2.2 502,065 + +0.5 502,065 - -0.2 502,065 - +0.4 502,072 + +0.6 502,072 + -0.7 502,125 + -0.4 502,150 + +0.9 502,165 - -0.3 502,192 + -1.6 502,200 - -0.9 502,239 - +0.4 502,252 - -0.8 502,261 + -1.1 502,264 - -0.2 502,264 - -1.1 502,269 - +0.7 502,275 + +0.4 502,282 - -0.4 502,282 - +2.0 502,282 - -1.2 502,282 - +0.0 502,282 - -0.4 502,282 - +1.1 502,283 - -1.9 502,283 - -0.6 502,295 + +0.1 502,303 - -0.3 502,304 - -0.4 502,319 - -0.6 502,344 + -1.7 502,344 + +0.0 502,344 + -1.1 502,354 + +0.2 502,362 - +0.6 502,362 - -2.3 502,366 + +0.4 502,376 + -1.5 502,446 - -1.9 502,474 + +1.9 502,502 + CCNA_00486 0.11 -0.3 502,538 - CCNA_00486 0.12 +0.5 502,558 - +0.9 502,574 + CCNA_00486 0.14 -1.7 502,574 + CCNA_00486 0.14 -1.9 502,706 + CCNA_00486 0.19 +2.4 502,711 + CCNA_00486 0.19 -2.3 502,714 - CCNA_00486 0.19 -1.5 502,719 - CCNA_00486 0.19 +0.2 502,738 - CCNA_00486 0.20 -0.6 502,743 - CCNA_00486 0.20 -0.7 502,748 - CCNA_00486 0.21 -1.3 502,754 + CCNA_00486 0.21 +0.6 502,755 + CCNA_00486 0.21 -0.0 502,755 + CCNA_00486 0.21 -0.7 502,755 + CCNA_00486 0.21 -2.2 502,819 - CCNA_00486 0.23 +1.7 502,919 - CCNA_00486 0.27 -0.8 502,954 - CCNA_00486 0.29 -1.9 502,954 - CCNA_00486 0.29 +0.2 502,956 - CCNA_00486 0.29 +0.9 502,974 + CCNA_00486 0.30 -3.2 502,976 - CCNA_00486 0.30 -0.3 502,979 + CCNA_00486 0.30 -0.3 502,982 - CCNA_00486 0.30 +0.5 502,982 - CCNA_00486 0.30 +0.5 502,984 + CCNA_00486 0.30 +0.5 503,001 - CCNA_00486 0.31 -1.1 503,031 + CCNA_00486 0.32 -0.9 503,037 + CCNA_00486 0.32 -0.8 503,107 + CCNA_00486 0.35 +2.9 503,110 - CCNA_00486 0.35 +0.9 503,115 - CCNA_00486 0.35 +1.0 503,120 + CCNA_00486 0.36 -0.9 503,129 - CCNA_00486 0.36 -0.3 503,140 + CCNA_00486 0.36 -0.2
Or see this region's nucleotide sequence