Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00126

Experiment: PYE with Tetracycline 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00124 and CCNA_00125 are separated by 95 nucleotidesCCNA_00125 and CCNA_00126 are separated by 6 nucleotidesCCNA_00126 and CCNA_00127 are separated by 219 nucleotidesCCNA_00127 and CCNA_00128 are separated by 234 nucleotides CCNA_00124: CCNA_00124 - hypothetical protein, at 134,826 to 135,413 _00124 CCNA_00125: CCNA_00125 - amino acid efflux permease, at 135,509 to 136,177 _00125 CCNA_00126: CCNA_00126 - glutathione S-transferase, at 136,184 to 136,591 _00126 CCNA_00127: CCNA_00127 - KTSC domain protein, at 136,811 to 137,011 _00127 CCNA_00128: CCNA_00128 - argininosuccinate synthase, at 137,246 to 138,472 _00128 Position (kb) 136 137Strain fitness (log2 ratio) -2 -1 0 1 2at 135.201 kb on + strand, within CCNA_00124at 135.233 kb on + strand, within CCNA_00124at 135.242 kb on - strand, within CCNA_00124at 135.243 kb on + strand, within CCNA_00124at 135.257 kb on - strand, within CCNA_00124at 135.319 kb on - strand, within CCNA_00124at 135.370 kb on + strandat 135.374 kb on + strandat 135.378 kb on - strandat 135.382 kb on - strandat 135.443 kb on + strandat 135.456 kb on - strandat 135.610 kb on + strand, within CCNA_00125at 135.613 kb on - strand, within CCNA_00125at 135.618 kb on - strand, within CCNA_00125at 135.632 kb on + strand, within CCNA_00125at 135.647 kb on - strand, within CCNA_00125at 135.652 kb on - strand, within CCNA_00125at 135.652 kb on - strand, within CCNA_00125at 135.652 kb on - strand, within CCNA_00125at 135.652 kb on - strand, within CCNA_00125at 135.657 kb on - strand, within CCNA_00125at 135.683 kb on - strand, within CCNA_00125at 135.695 kb on - strand, within CCNA_00125at 135.743 kb on + strand, within CCNA_00125at 135.750 kb on + strand, within CCNA_00125at 135.750 kb on + strand, within CCNA_00125at 135.750 kb on + strand, within CCNA_00125at 135.750 kb on + strand, within CCNA_00125at 135.758 kb on - strand, within CCNA_00125at 135.758 kb on - strand, within CCNA_00125at 135.758 kb on - strand, within CCNA_00125at 135.787 kb on - strand, within CCNA_00125at 135.868 kb on - strand, within CCNA_00125at 135.868 kb on - strand, within CCNA_00125at 135.870 kb on + strand, within CCNA_00125at 135.878 kb on - strand, within CCNA_00125at 135.950 kb on - strand, within CCNA_00125at 135.955 kb on - strand, within CCNA_00125at 135.966 kb on + strand, within CCNA_00125at 135.971 kb on + strand, within CCNA_00125at 135.971 kb on + strand, within CCNA_00125at 135.971 kb on + strand, within CCNA_00125at 135.974 kb on - strand, within CCNA_00125at 135.979 kb on - strand, within CCNA_00125at 135.979 kb on - strand, within CCNA_00125at 135.979 kb on - strand, within CCNA_00125at 135.979 kb on - strand, within CCNA_00125at 135.986 kb on + strand, within CCNA_00125at 135.994 kb on - strand, within CCNA_00125at 135.994 kb on - strand, within CCNA_00125at 135.994 kb on - strand, within CCNA_00125at 135.994 kb on - strand, within CCNA_00125at 135.994 kb on - strand, within CCNA_00125at 136.017 kb on + strand, within CCNA_00125at 136.102 kb on - strand, within CCNA_00125at 136.148 kb on + strandat 136.148 kb on + strandat 136.148 kb on + strandat 136.148 kb on + strandat 136.148 kb on + strandat 136.156 kb on - strandat 136.156 kb on - strandat 136.156 kb on - strandat 136.156 kb on - strandat 136.156 kb on - strandat 136.156 kb on - strandat 136.156 kb on - strandat 136.156 kb on - strandat 136.156 kb on - strandat 136.189 kb on - strandat 136.196 kb on - strandat 136.196 kb on - strandat 136.196 kb on - strandat 136.213 kb on - strandat 136.215 kb on + strandat 136.215 kb on + strandat 136.215 kb on + strandat 136.215 kb on + strandat 136.220 kb on + strandat 136.223 kb on - strandat 136.266 kb on + strand, within CCNA_00126at 136.310 kb on + strand, within CCNA_00126at 136.318 kb on - strand, within CCNA_00126at 136.326 kb on - strand, within CCNA_00126at 136.336 kb on + strand, within CCNA_00126at 136.341 kb on + strand, within CCNA_00126at 136.341 kb on + strand, within CCNA_00126at 136.368 kb on + strand, within CCNA_00126at 136.368 kb on + strand, within CCNA_00126at 136.368 kb on + strand, within CCNA_00126at 136.368 kb on + strand, within CCNA_00126at 136.368 kb on + strand, within CCNA_00126at 136.376 kb on - strand, within CCNA_00126at 136.376 kb on - strand, within CCNA_00126at 136.376 kb on - strand, within CCNA_00126at 136.376 kb on - strand, within CCNA_00126at 136.376 kb on - strand, within CCNA_00126at 136.387 kb on + strand, within CCNA_00126at 136.414 kb on - strand, within CCNA_00126at 136.425 kb on + strand, within CCNA_00126at 136.433 kb on - strand, within CCNA_00126at 136.433 kb on - strand, within CCNA_00126at 136.474 kb on + strand, within CCNA_00126at 136.533 kb on + strand, within CCNA_00126at 136.547 kb on + strand, within CCNA_00126at 136.580 kb on + strandat 136.612 kb on + strandat 136.649 kb on - strandat 136.649 kb on - strandat 136.654 kb on - strandat 136.679 kb on + strandat 136.679 kb on + strandat 136.687 kb on - strandat 136.687 kb on - strandat 136.687 kb on - strandat 136.687 kb on - strandat 136.742 kb on + strandat 136.749 kb on - strandat 136.794 kb on + strandat 136.800 kb on + strandat 136.801 kb on + strandat 136.801 kb on + strandat 136.842 kb on - strand, within CCNA_00127at 136.852 kb on - strand, within CCNA_00127at 136.852 kb on - strand, within CCNA_00127at 136.859 kb on - strand, within CCNA_00127at 136.868 kb on - strand, within CCNA_00127at 136.870 kb on + strand, within CCNA_00127at 136.875 kb on - strand, within CCNA_00127at 136.913 kb on - strand, within CCNA_00127at 136.924 kb on - strand, within CCNA_00127at 136.932 kb on - strand, within CCNA_00127at 136.934 kb on + strand, within CCNA_00127at 136.942 kb on - strand, within CCNA_00127at 136.944 kb on - strand, within CCNA_00127at 136.992 kb on - strandat 137.014 kb on - strandat 137.075 kb on - strandat 137.083 kb on - strandat 137.086 kb on + strandat 137.091 kb on + strandat 137.114 kb on - strandat 137.207 kb on + strandat 137.219 kb on + strandat 137.226 kb on - strandat 137.226 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.0001 mg/ml
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135,201 + CCNA_00124 0.64 -2.3
135,233 + CCNA_00124 0.69 -1.4
135,242 - CCNA_00124 0.71 +0.1
135,243 + CCNA_00124 0.71 +1.0
135,257 - CCNA_00124 0.73 +0.1
135,319 - CCNA_00124 0.84 +1.1
135,370 + -1.6
135,374 + +0.2
135,378 - +0.2
135,382 - +1.4
135,443 + -0.1
135,456 - +2.7
135,610 + CCNA_00125 0.15 -2.2
135,613 - CCNA_00125 0.16 +1.6
135,618 - CCNA_00125 0.16 +0.3
135,632 + CCNA_00125 0.18 -0.9
135,647 - CCNA_00125 0.21 +1.1
135,652 - CCNA_00125 0.21 -0.7
135,652 - CCNA_00125 0.21 +0.3
135,652 - CCNA_00125 0.21 +0.1
135,652 - CCNA_00125 0.21 -0.1
135,657 - CCNA_00125 0.22 -0.3
135,683 - CCNA_00125 0.26 -0.7
135,695 - CCNA_00125 0.28 -0.3
135,743 + CCNA_00125 0.35 -0.4
135,750 + CCNA_00125 0.36 +0.5
135,750 + CCNA_00125 0.36 -0.6
135,750 + CCNA_00125 0.36 -2.7
135,750 + CCNA_00125 0.36 -0.1
135,758 - CCNA_00125 0.37 +0.4
135,758 - CCNA_00125 0.37 +0.6
135,758 - CCNA_00125 0.37 +0.3
135,787 - CCNA_00125 0.42 +0.3
135,868 - CCNA_00125 0.54 -0.0
135,868 - CCNA_00125 0.54 -0.3
135,870 + CCNA_00125 0.54 -1.5
135,878 - CCNA_00125 0.55 +0.8
135,950 - CCNA_00125 0.66 +0.3
135,955 - CCNA_00125 0.67 -1.9
135,966 + CCNA_00125 0.68 +1.7
135,971 + CCNA_00125 0.69 -1.3
135,971 + CCNA_00125 0.69 +0.7
135,971 + CCNA_00125 0.69 -1.2
135,974 - CCNA_00125 0.70 -0.9
135,979 - CCNA_00125 0.70 -0.9
135,979 - CCNA_00125 0.70 +0.9
135,979 - CCNA_00125 0.70 -0.3
135,979 - CCNA_00125 0.70 -0.8
135,986 + CCNA_00125 0.71 +0.1
135,994 - CCNA_00125 0.72 +0.5
135,994 - CCNA_00125 0.72 -0.4
135,994 - CCNA_00125 0.72 +0.8
135,994 - CCNA_00125 0.72 +0.8
135,994 - CCNA_00125 0.72 +0.2
136,017 + CCNA_00125 0.76 -0.8
136,102 - CCNA_00125 0.89 -1.9
136,148 + +0.2
136,148 + -0.2
136,148 + -0.2
136,148 + -1.8
136,148 + -0.9
136,156 - +1.3
136,156 - -0.9
136,156 - -0.8
136,156 - -0.6
136,156 - -0.2
136,156 - +0.2
136,156 - -1.1
136,156 - +0.3
136,156 - -0.4
136,189 - +0.5
136,196 - -0.2
136,196 - -0.3
136,196 - -2.1
136,213 - +1.2
136,215 + -0.9
136,215 + +1.6
136,215 + +1.5
136,215 + -2.0
136,220 + +0.7
136,223 - +0.3
136,266 + CCNA_00126 0.20 -0.4
136,310 + CCNA_00126 0.31 -1.1
136,318 - CCNA_00126 0.33 +0.5
136,326 - CCNA_00126 0.35 -0.3
136,336 + CCNA_00126 0.37 -1.2
136,341 + CCNA_00126 0.38 +0.1
136,341 + CCNA_00126 0.38 -0.1
136,368 + CCNA_00126 0.45 -1.1
136,368 + CCNA_00126 0.45 -1.0
136,368 + CCNA_00126 0.45 -0.7
136,368 + CCNA_00126 0.45 -1.5
136,368 + CCNA_00126 0.45 -0.7
136,376 - CCNA_00126 0.47 +0.3
136,376 - CCNA_00126 0.47 -1.3
136,376 - CCNA_00126 0.47 -0.5
136,376 - CCNA_00126 0.47 -1.1
136,376 - CCNA_00126 0.47 +0.3
136,387 + CCNA_00126 0.50 -2.3
136,414 - CCNA_00126 0.56 +0.5
136,425 + CCNA_00126 0.59 -0.5
136,433 - CCNA_00126 0.61 -1.2
136,433 - CCNA_00126 0.61 -1.8
136,474 + CCNA_00126 0.71 -0.4
136,533 + CCNA_00126 0.86 -0.0
136,547 + CCNA_00126 0.89 +0.1
136,580 + -0.3
136,612 + -1.1
136,649 - +0.2
136,649 - +0.1
136,654 - -1.5
136,679 + -0.1
136,679 + +0.6
136,687 - -0.8
136,687 - -0.7
136,687 - +0.9
136,687 - +0.5
136,742 + -1.7
136,749 - +0.4
136,794 + +0.2
136,800 + +0.0
136,801 + +0.2
136,801 + -0.5
136,842 - CCNA_00127 0.15 -1.7
136,852 - CCNA_00127 0.20 -1.1
136,852 - CCNA_00127 0.20 +0.0
136,859 - CCNA_00127 0.24 +0.3
136,868 - CCNA_00127 0.28 +0.9
136,870 + CCNA_00127 0.29 +0.1
136,875 - CCNA_00127 0.32 +1.7
136,913 - CCNA_00127 0.51 -1.6
136,924 - CCNA_00127 0.56 +0.5
136,932 - CCNA_00127 0.60 -1.4
136,934 + CCNA_00127 0.61 +0.6
136,942 - CCNA_00127 0.65 +1.6
136,944 - CCNA_00127 0.66 +0.3
136,992 - -1.0
137,014 - -2.5
137,075 - -1.5
137,083 - +1.5
137,086 + +1.7
137,091 + -1.7
137,114 - +0.3
137,207 + -0.1
137,219 + +2.0
137,226 - +1.5
137,226 - +1.4

Or see this region's nucleotide sequence