Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00001

Experiment: PYE with Tetracycline 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00001 and CCNA_00002 overlap by 4 nucleotidesCCNA_00002 and CCNA_00003 overlap by 4 nucleotides CCNA_00001: CCNA_00001 - ATP/GTP-binding protein, at 202 to 1,107 _00001 CCNA_00002: CCNA_00002 - septum formation protein Maf, at 1,104 to 1,703 _00002 CCNA_00003: CCNA_00003 - shikimate dehydrogenase (EC 1.1.1.25) (from data), at 1,700 to 2,557 _00003 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1 2 3at 0.042 kb on + strandat 0.194 kb on - strandat 0.194 kb on - strandat 0.196 kb on + strandat 0.239 kb on + strandat 0.249 kb on + strandat 0.255 kb on + strandat 0.257 kb on - strandat 0.304 kb on + strand, within CCNA_00001at 0.387 kb on + strand, within CCNA_00001at 0.443 kb on + strand, within CCNA_00001at 0.455 kb on + strand, within CCNA_00001at 0.504 kb on - strand, within CCNA_00001at 0.588 kb on + strand, within CCNA_00001at 0.649 kb on + strand, within CCNA_00001at 0.649 kb on + strand, within CCNA_00001at 0.705 kb on + strand, within CCNA_00001at 0.705 kb on + strand, within CCNA_00001at 0.718 kb on - strand, within CCNA_00001at 0.738 kb on - strand, within CCNA_00001at 0.748 kb on - strand, within CCNA_00001at 0.829 kb on - strand, within CCNA_00001at 1.036 kb on + strandat 1.036 kb on + strandat 1.067 kb on - strandat 1.078 kb on + strandat 1.079 kb on - strandat 1.079 kb on - strandat 1.083 kb on + strandat 1.083 kb on + strandat 1.086 kb on - strandat 1.086 kb on - strandat 1.091 kb on - strandat 1.096 kb on + strandat 1.096 kb on - strandat 1.104 kb on - strandat 1.114 kb on + strandat 1.114 kb on + strandat 1.114 kb on + strandat 1.131 kb on + strandat 1.131 kb on + strandat 1.155 kb on + strandat 1.192 kb on + strand, within CCNA_00002at 1.220 kb on + strand, within CCNA_00002at 1.248 kb on + strand, within CCNA_00002at 1.261 kb on + strand, within CCNA_00002at 1.261 kb on + strand, within CCNA_00002at 1.292 kb on + strand, within CCNA_00002at 1.293 kb on + strand, within CCNA_00002at 1.293 kb on - strand, within CCNA_00002at 1.300 kb on - strand, within CCNA_00002at 1.300 kb on - strand, within CCNA_00002at 1.319 kb on + strand, within CCNA_00002at 1.324 kb on + strand, within CCNA_00002at 1.324 kb on + strand, within CCNA_00002at 1.327 kb on - strand, within CCNA_00002at 1.329 kb on + strand, within CCNA_00002at 1.329 kb on + strand, within CCNA_00002at 1.337 kb on - strand, within CCNA_00002at 1.337 kb on - strand, within CCNA_00002at 1.342 kb on + strand, within CCNA_00002at 1.350 kb on - strand, within CCNA_00002at 1.364 kb on - strand, within CCNA_00002at 1.374 kb on + strand, within CCNA_00002at 1.386 kb on + strand, within CCNA_00002at 1.399 kb on + strand, within CCNA_00002at 1.399 kb on + strand, within CCNA_00002at 1.399 kb on + strand, within CCNA_00002at 1.399 kb on + strand, within CCNA_00002at 1.399 kb on + strand, within CCNA_00002at 1.401 kb on + strand, within CCNA_00002at 1.407 kb on - strand, within CCNA_00002at 1.407 kb on - strand, within CCNA_00002at 1.407 kb on - strand, within CCNA_00002at 1.407 kb on - strand, within CCNA_00002at 1.407 kb on - strand, within CCNA_00002at 1.417 kb on - strand, within CCNA_00002at 1.428 kb on - strand, within CCNA_00002at 1.459 kb on + strand, within CCNA_00002at 1.467 kb on + strand, within CCNA_00002at 1.486 kb on - strand, within CCNA_00002at 1.531 kb on + strand, within CCNA_00002at 1.531 kb on + strand, within CCNA_00002at 1.531 kb on + strand, within CCNA_00002at 1.531 kb on + strand, within CCNA_00002at 1.531 kb on + strand, within CCNA_00002at 1.534 kb on + strand, within CCNA_00002at 1.534 kb on + strand, within CCNA_00002at 1.534 kb on + strand, within CCNA_00002at 1.534 kb on + strand, within CCNA_00002at 1.539 kb on - strand, within CCNA_00002at 1.539 kb on - strand, within CCNA_00002at 1.542 kb on - strand, within CCNA_00002at 1.542 kb on - strand, within CCNA_00002at 1.542 kb on - strand, within CCNA_00002at 1.542 kb on - strand, within CCNA_00002at 1.542 kb on - strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.559 kb on + strand, within CCNA_00002at 1.559 kb on + strand, within CCNA_00002at 1.562 kb on - strand, within CCNA_00002at 1.562 kb on - strand, within CCNA_00002at 1.562 kb on - strand, within CCNA_00002at 1.562 kb on - strand, within CCNA_00002at 1.567 kb on - strand, within CCNA_00002at 1.567 kb on - strand, within CCNA_00002at 1.567 kb on - strand, within CCNA_00002at 1.576 kb on + strand, within CCNA_00002at 1.576 kb on + strand, within CCNA_00002at 1.576 kb on + strand, within CCNA_00002at 1.581 kb on + strand, within CCNA_00002at 1.581 kb on + strand, within CCNA_00002at 1.581 kb on - strand, within CCNA_00002at 1.589 kb on - strand, within CCNA_00002at 1.591 kb on - strand, within CCNA_00002at 1.605 kb on - strand, within CCNA_00002at 1.610 kb on + strand, within CCNA_00002at 1.639 kb on + strand, within CCNA_00002at 1.647 kb on - strandat 1.663 kb on - strandat 1.689 kb on + strandat 1.696 kb on + strandat 1.697 kb on - strandat 1.697 kb on - strandat 1.739 kb on + strandat 1.739 kb on + strandat 1.747 kb on - strandat 1.751 kb on - strandat 1.768 kb on - strandat 1.814 kb on - strand, within CCNA_00003at 1.817 kb on + strand, within CCNA_00003at 1.849 kb on + strand, within CCNA_00003at 1.849 kb on + strand, within CCNA_00003at 1.901 kb on - strand, within CCNA_00003at 1.905 kb on + strand, within CCNA_00003at 1.919 kb on + strand, within CCNA_00003at 1.980 kb on + strand, within CCNA_00003at 2.039 kb on - strand, within CCNA_00003at 2.044 kb on - strand, within CCNA_00003at 2.077 kb on - strand, within CCNA_00003

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.0001 mg/ml
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42 + +1.0
194 - +1.8
194 - +1.9
196 + -0.1
239 + -0.3
249 + +0.1
255 + -0.4
257 - -1.5
304 + CCNA_00001 0.11 -0.7
387 + CCNA_00001 0.20 -0.4
443 + CCNA_00001 0.27 +1.0
455 + CCNA_00001 0.28 -0.4
504 - CCNA_00001 0.33 +0.0
588 + CCNA_00001 0.43 -0.8
649 + CCNA_00001 0.49 -2.3
649 + CCNA_00001 0.49 +0.5
705 + CCNA_00001 0.56 -0.7
705 + CCNA_00001 0.56 -1.4
718 - CCNA_00001 0.57 -0.5
738 - CCNA_00001 0.59 -0.1
748 - CCNA_00001 0.60 -1.7
829 - CCNA_00001 0.69 +0.5
1,036 + -0.1
1,036 + +0.2
1,067 - +1.5
1,078 + -0.7
1,079 - +1.0
1,079 - -1.2
1,083 + +2.2
1,083 + +2.5
1,086 - -0.8
1,086 - +0.2
1,091 - +0.2
1,096 + +0.2
1,096 - -0.4
1,104 - +1.2
1,114 + -0.7
1,114 + -0.5
1,114 + +1.0
1,131 + -2.5
1,131 + -0.3
1,155 + -0.2
1,192 + CCNA_00002 0.15 +0.1
1,220 + CCNA_00002 0.19 +0.8
1,248 + CCNA_00002 0.24 -0.4
1,261 + CCNA_00002 0.26 -0.6
1,261 + CCNA_00002 0.26 -0.4
1,292 + CCNA_00002 0.31 +0.2
1,293 + CCNA_00002 0.32 +0.5
1,293 - CCNA_00002 0.32 -1.0
1,300 - CCNA_00002 0.33 +0.0
1,300 - CCNA_00002 0.33 -0.5
1,319 + CCNA_00002 0.36 -0.2
1,324 + CCNA_00002 0.37 +1.0
1,324 + CCNA_00002 0.37 -0.7
1,327 - CCNA_00002 0.37 -2.3
1,329 + CCNA_00002 0.38 -1.4
1,329 + CCNA_00002 0.38 -0.3
1,337 - CCNA_00002 0.39 -0.3
1,337 - CCNA_00002 0.39 +3.6
1,342 + CCNA_00002 0.40 -0.2
1,350 - CCNA_00002 0.41 -1.2
1,364 - CCNA_00002 0.43 +0.0
1,374 + CCNA_00002 0.45 -1.1
1,386 + CCNA_00002 0.47 +0.5
1,399 + CCNA_00002 0.49 +0.1
1,399 + CCNA_00002 0.49 +1.8
1,399 + CCNA_00002 0.49 -0.9
1,399 + CCNA_00002 0.49 -0.7
1,399 + CCNA_00002 0.49 +0.2
1,401 + CCNA_00002 0.49 +2.6
1,407 - CCNA_00002 0.51 -0.5
1,407 - CCNA_00002 0.51 -1.8
1,407 - CCNA_00002 0.51 -0.2
1,407 - CCNA_00002 0.51 +0.5
1,407 - CCNA_00002 0.51 +0.4
1,417 - CCNA_00002 0.52 -0.6
1,428 - CCNA_00002 0.54 +0.9
1,459 + CCNA_00002 0.59 +0.5
1,467 + CCNA_00002 0.60 +0.9
1,486 - CCNA_00002 0.64 +0.4
1,531 + CCNA_00002 0.71 +1.3
1,531 + CCNA_00002 0.71 -0.1
1,531 + CCNA_00002 0.71 +1.8
1,531 + CCNA_00002 0.71 +0.8
1,531 + CCNA_00002 0.71 -0.6
1,534 + CCNA_00002 0.72 -0.3
1,534 + CCNA_00002 0.72 +0.5
1,534 + CCNA_00002 0.72 +0.3
1,534 + CCNA_00002 0.72 +0.7
1,539 - CCNA_00002 0.72 -0.3
1,539 - CCNA_00002 0.72 -0.4
1,542 - CCNA_00002 0.73 -1.4
1,542 - CCNA_00002 0.73 -1.9
1,542 - CCNA_00002 0.73 -1.2
1,542 - CCNA_00002 0.73 -0.4
1,542 - CCNA_00002 0.73 +1.5
1,554 + CCNA_00002 0.75 -0.8
1,554 + CCNA_00002 0.75 -0.7
1,554 + CCNA_00002 0.75 +0.5
1,554 + CCNA_00002 0.75 +0.4
1,554 + CCNA_00002 0.75 +0.4
1,554 + CCNA_00002 0.75 +1.5
1,554 + CCNA_00002 0.75 -0.4
1,559 + CCNA_00002 0.76 +1.1
1,559 + CCNA_00002 0.76 +1.3
1,562 - CCNA_00002 0.76 -1.0
1,562 - CCNA_00002 0.76 +0.1
1,562 - CCNA_00002 0.76 -0.5
1,562 - CCNA_00002 0.76 -1.4
1,567 - CCNA_00002 0.77 -1.4
1,567 - CCNA_00002 0.77 +0.5
1,567 - CCNA_00002 0.77 -0.9
1,576 + CCNA_00002 0.79 +1.0
1,576 + CCNA_00002 0.79 +0.3
1,576 + CCNA_00002 0.79 -0.2
1,581 + CCNA_00002 0.80 +0.5
1,581 + CCNA_00002 0.80 -1.5
1,581 - CCNA_00002 0.80 -1.1
1,589 - CCNA_00002 0.81 -0.4
1,591 - CCNA_00002 0.81 +0.5
1,605 - CCNA_00002 0.83 -0.3
1,610 + CCNA_00002 0.84 +2.3
1,639 + CCNA_00002 0.89 +0.5
1,647 - +2.5
1,663 - -1.0
1,689 + +0.0
1,696 + -0.5
1,697 - -0.3
1,697 - +0.0
1,739 + +0.0
1,739 + +0.3
1,747 - -2.1
1,751 - +0.3
1,768 - -0.9
1,814 - CCNA_00003 0.13 -1.4
1,817 + CCNA_00003 0.14 +0.6
1,849 + CCNA_00003 0.17 -0.2
1,849 + CCNA_00003 0.17 -0.7
1,901 - CCNA_00003 0.23 -0.9
1,905 + CCNA_00003 0.24 -0.8
1,919 + CCNA_00003 0.26 -0.3
1,980 + CCNA_00003 0.33 -1.0
2,039 - CCNA_00003 0.40 -0.1
2,044 - CCNA_00003 0.40 -1.1
2,077 - CCNA_00003 0.44 -2.0

Or see this region's nucleotide sequence