Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22065

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22060 and BPHYT_RS22065 are separated by 218 nucleotidesBPHYT_RS22065 and BPHYT_RS22070 are separated by 514 nucleotides BPHYT_RS22060: BPHYT_RS22060 - amino acid transporter, at 505,151 to 506,692 _RS22060 BPHYT_RS22065: BPHYT_RS22065 - DNA-binding protein, at 506,911 to 508,383 _RS22065 BPHYT_RS22070: BPHYT_RS22070 - DNA-binding protein, at 508,898 to 509,350 _RS22070 Position (kb) 506 507 508 509Strain fitness (log2 ratio) -3 -2 -1 0 1at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.007 kb on - strand, within BPHYT_RS22060at 506.165 kb on + strand, within BPHYT_RS22060at 506.165 kb on + strand, within BPHYT_RS22060at 506.213 kb on + strand, within BPHYT_RS22060at 506.214 kb on - strand, within BPHYT_RS22060at 506.214 kb on - strand, within BPHYT_RS22060at 506.214 kb on - strand, within BPHYT_RS22060at 506.319 kb on - strand, within BPHYT_RS22060at 506.327 kb on + strand, within BPHYT_RS22060at 506.327 kb on + strand, within BPHYT_RS22060at 506.382 kb on - strand, within BPHYT_RS22060at 506.420 kb on + strand, within BPHYT_RS22060at 506.525 kb on - strand, within BPHYT_RS22060at 506.690 kb on + strandat 506.690 kb on + strandat 506.740 kb on - strandat 506.831 kb on - strandat 506.850 kb on + strandat 506.851 kb on - strandat 506.963 kb on - strandat 507.103 kb on + strand, within BPHYT_RS22065at 507.103 kb on + strand, within BPHYT_RS22065at 507.589 kb on + strand, within BPHYT_RS22065at 507.701 kb on - strand, within BPHYT_RS22065at 507.811 kb on + strand, within BPHYT_RS22065at 507.887 kb on - strandat 507.935 kb on - strand, within BPHYT_RS22065at 507.959 kb on - strand, within BPHYT_RS22065at 508.085 kb on - strand, within BPHYT_RS22065at 508.268 kb on - strandat 508.315 kb on - strandat 508.381 kb on + strandat 508.466 kb on - strandat 508.573 kb on - strandat 508.676 kb on - strandat 508.685 kb on + strandat 508.788 kb on - strandat 508.788 kb on - strandat 509.377 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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506,006 + BPHYT_RS22060 0.55 -0.0
506,006 + BPHYT_RS22060 0.55 -0.5
506,006 + BPHYT_RS22060 0.55 -0.5
506,006 + BPHYT_RS22060 0.55 -2.8
506,006 + BPHYT_RS22060 0.55 -0.6
506,006 + BPHYT_RS22060 0.55 -0.3
506,006 + BPHYT_RS22060 0.55 -0.3
506,006 + BPHYT_RS22060 0.55 +0.4
506,006 + BPHYT_RS22060 0.55 +0.0
506,007 - BPHYT_RS22060 0.56 -0.1
506,165 + BPHYT_RS22060 0.66 +0.4
506,165 + BPHYT_RS22060 0.66 +0.0
506,213 + BPHYT_RS22060 0.69 -0.3
506,214 - BPHYT_RS22060 0.69 +0.1
506,214 - BPHYT_RS22060 0.69 +0.6
506,214 - BPHYT_RS22060 0.69 -0.6
506,319 - BPHYT_RS22060 0.76 -0.5
506,327 + BPHYT_RS22060 0.76 -0.2
506,327 + BPHYT_RS22060 0.76 -0.6
506,382 - BPHYT_RS22060 0.80 -1.3
506,420 + BPHYT_RS22060 0.82 +0.9
506,525 - BPHYT_RS22060 0.89 -0.7
506,690 + -0.6
506,690 + -0.3
506,740 - -0.0
506,831 - -0.4
506,850 + -0.4
506,851 - -0.9
506,963 - -0.1
507,103 + BPHYT_RS22065 0.13 -1.1
507,103 + BPHYT_RS22065 0.13 -0.8
507,589 + BPHYT_RS22065 0.46 -1.1
507,701 - BPHYT_RS22065 0.54 -0.8
507,811 + BPHYT_RS22065 0.61 -0.3
507,887 - -0.8
507,935 - BPHYT_RS22065 0.70 -0.6
507,959 - BPHYT_RS22065 0.71 -0.1
508,085 - BPHYT_RS22065 0.80 -0.1
508,268 - +0.7
508,315 - -1.1
508,381 + +0.3
508,466 - -0.6
508,573 - -0.1
508,676 - -2.1
508,685 + -1.1
508,788 - +0.1
508,788 - -0.1
509,377 + -0.2

Or see this region's nucleotide sequence