Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03200 and BPHYT_RS03205 are separated by 181 nucleotides BPHYT_RS03205 and BPHYT_RS03210 overlap by 4 nucleotides
BPHYT_RS03200: BPHYT_RS03200 - aspartate--tRNA(Asp/Asn) ligase, at 716,265 to 718,064
_RS03200
BPHYT_RS03205: BPHYT_RS03205 - dihydroneopterin triphosphate pyrophosphatase, at 718,246 to 718,761
_RS03205
BPHYT_RS03210: BPHYT_RS03210 - cardiolipin synthetase, at 718,758 to 720,017
_RS03210
Position (kb) 718
719 Strain fitness (log2 ratio) -1
0
1
2
3 at 718.062 kb on + strand at 718.062 kb on + strand at 718.163 kb on + strand at 718.163 kb on + strand at 718.214 kb on - strand at 718.277 kb on + strand at 718.480 kb on + strand, within BPHYT_RS03205 at 718.480 kb on + strand, within BPHYT_RS03205 at 718.493 kb on - strand, within BPHYT_RS03205 at 718.493 kb on - strand, within BPHYT_RS03205 at 718.501 kb on + strand, within BPHYT_RS03205 at 718.707 kb on + strand, within BPHYT_RS03205 at 718.707 kb on + strand, within BPHYT_RS03205 at 718.941 kb on + strand, within BPHYT_RS03210 at 718.941 kb on + strand, within BPHYT_RS03210 at 718.943 kb on + strand, within BPHYT_RS03210 at 718.944 kb on - strand, within BPHYT_RS03210 at 718.944 kb on - strand, within BPHYT_RS03210 at 718.944 kb on - strand, within BPHYT_RS03210 at 718.944 kb on - strand, within BPHYT_RS03210 at 719.028 kb on - strand, within BPHYT_RS03210 at 719.100 kb on + strand, within BPHYT_RS03210 at 719.209 kb on - strand, within BPHYT_RS03210 at 719.506 kb on - strand at 719.506 kb on - strand, within BPHYT_RS03210 at 719.556 kb on + strand, within BPHYT_RS03210 at 719.661 kb on + strand, within BPHYT_RS03210
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 718,062 + -0.3 718,062 + +0.8 718,163 + -0.1 718,163 + +0.7 718,214 - -0.8 718,277 + -0.5 718,480 + BPHYT_RS03205 0.45 +0.3 718,480 + BPHYT_RS03205 0.45 +0.3 718,493 - BPHYT_RS03205 0.48 -0.1 718,493 - BPHYT_RS03205 0.48 +0.2 718,501 + BPHYT_RS03205 0.49 +0.1 718,707 + BPHYT_RS03205 0.89 -1.7 718,707 + BPHYT_RS03205 0.89 -0.0 718,941 + BPHYT_RS03210 0.15 +0.5 718,941 + BPHYT_RS03210 0.15 -0.6 718,943 + BPHYT_RS03210 0.15 -0.1 718,944 - BPHYT_RS03210 0.15 -0.6 718,944 - BPHYT_RS03210 0.15 -0.4 718,944 - BPHYT_RS03210 0.15 -0.6 718,944 - BPHYT_RS03210 0.15 +0.1 719,028 - BPHYT_RS03210 0.21 -0.1 719,100 + BPHYT_RS03210 0.27 -0.2 719,209 - BPHYT_RS03210 0.36 -0.2 719,506 - +3.5 719,506 - BPHYT_RS03210 0.59 +0.1 719,556 + BPHYT_RS03210 0.63 -0.4 719,661 + BPHYT_RS03210 0.72 -0.5
Or see this region's nucleotide sequence