Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01595 and BPHYT_RS01600 are separated by 323 nucleotides BPHYT_RS01600 and BPHYT_RS01605 overlap by 34 nucleotides BPHYT_RS01605 and BPHYT_RS01610 are separated by 227 nucleotides
BPHYT_RS01595: BPHYT_RS01595 - homoserine O-acetyltransferase, at 361,639 to 362,784
_RS01595
BPHYT_RS01600: BPHYT_RS01600 - dihydroorotate oxidase, at 363,108 to 363,791
_RS01600
BPHYT_RS01605: BPHYT_RS01605 - HAD family hydrolase, at 363,758 to 364,561
_RS01605
BPHYT_RS01610: BPHYT_RS01610 - acetylglutamate kinase, at 364,789 to 365,688
_RS01610
Position (kb) 363
364 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 362.165 kb on + strand, within BPHYT_RS01595 at 362.166 kb on - strand, within BPHYT_RS01595 at 362.166 kb on - strand, within BPHYT_RS01595 at 362.168 kb on + strand, within BPHYT_RS01595 at 362.169 kb on - strand, within BPHYT_RS01595 at 362.598 kb on - strand, within BPHYT_RS01595 at 362.656 kb on - strand, within BPHYT_RS01595 at 362.656 kb on - strand, within BPHYT_RS01595 at 362.678 kb on + strand at 362.799 kb on - strand at 362.882 kb on + strand at 362.883 kb on - strand at 362.884 kb on + strand at 362.884 kb on + strand at 362.884 kb on + strand at 362.885 kb on - strand at 362.950 kb on + strand at 363.043 kb on - strand at 363.043 kb on - strand at 363.109 kb on + strand at 363.178 kb on + strand, within BPHYT_RS01600 at 363.178 kb on + strand, within BPHYT_RS01600 at 363.179 kb on - strand, within BPHYT_RS01600 at 363.179 kb on - strand, within BPHYT_RS01600 at 363.200 kb on + strand, within BPHYT_RS01600 at 363.200 kb on + strand, within BPHYT_RS01600 at 363.200 kb on + strand, within BPHYT_RS01600 at 363.201 kb on - strand, within BPHYT_RS01600 at 363.201 kb on - strand, within BPHYT_RS01600 at 363.202 kb on + strand, within BPHYT_RS01600 at 363.202 kb on + strand, within BPHYT_RS01600 at 363.203 kb on - strand, within BPHYT_RS01600 at 363.759 kb on + strand at 363.759 kb on + strand at 363.845 kb on + strand, within BPHYT_RS01605 at 363.872 kb on - strand, within BPHYT_RS01605 at 363.879 kb on + strand, within BPHYT_RS01605 at 363.879 kb on + strand, within BPHYT_RS01605 at 363.879 kb on + strand, within BPHYT_RS01605 at 363.879 kb on + strand, within BPHYT_RS01605 at 363.879 kb on + strand, within BPHYT_RS01605 at 363.880 kb on - strand, within BPHYT_RS01605 at 363.880 kb on - strand, within BPHYT_RS01605 at 364.111 kb on + strand, within BPHYT_RS01605 at 364.112 kb on - strand, within BPHYT_RS01605 at 364.179 kb on + strand, within BPHYT_RS01605 at 364.180 kb on - strand, within BPHYT_RS01605 at 364.180 kb on - strand, within BPHYT_RS01605 at 364.356 kb on + strand, within BPHYT_RS01605 at 364.356 kb on + strand, within BPHYT_RS01605 at 364.426 kb on - strand, within BPHYT_RS01605 at 364.426 kb on - strand, within BPHYT_RS01605 at 364.710 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 362,165 + BPHYT_RS01595 0.46 -3.6 362,166 - BPHYT_RS01595 0.46 -1.0 362,166 - BPHYT_RS01595 0.46 -1.2 362,168 + BPHYT_RS01595 0.46 -5.1 362,169 - BPHYT_RS01595 0.46 -2.7 362,598 - BPHYT_RS01595 0.84 -2.2 362,656 - BPHYT_RS01595 0.89 -4.6 362,656 - BPHYT_RS01595 0.89 -0.6 362,678 + -6.2 362,799 - +1.6 362,882 + -3.4 362,883 - +0.3 362,884 + -3.4 362,884 + +0.6 362,884 + -2.9 362,885 - -0.5 362,950 + -6.2 363,043 - -1.2 363,043 - -0.3 363,109 + -0.3 363,178 + BPHYT_RS01600 0.10 +0.5 363,178 + BPHYT_RS01600 0.10 +0.1 363,179 - BPHYT_RS01600 0.10 +0.1 363,179 - BPHYT_RS01600 0.10 -0.1 363,200 + BPHYT_RS01600 0.13 -0.4 363,200 + BPHYT_RS01600 0.13 -0.3 363,200 + BPHYT_RS01600 0.13 +0.6 363,201 - BPHYT_RS01600 0.14 -1.7 363,201 - BPHYT_RS01600 0.14 +0.1 363,202 + BPHYT_RS01600 0.14 -0.7 363,202 + BPHYT_RS01600 0.14 -0.8 363,203 - BPHYT_RS01600 0.14 -0.2 363,759 + +1.4 363,759 + +0.4 363,845 + BPHYT_RS01605 0.11 -0.2 363,872 - BPHYT_RS01605 0.14 +1.2 363,879 + BPHYT_RS01605 0.15 +0.2 363,879 + BPHYT_RS01605 0.15 +0.5 363,879 + BPHYT_RS01605 0.15 +0.1 363,879 + BPHYT_RS01605 0.15 +0.3 363,879 + BPHYT_RS01605 0.15 -0.4 363,880 - BPHYT_RS01605 0.15 +0.4 363,880 - BPHYT_RS01605 0.15 -0.7 364,111 + BPHYT_RS01605 0.44 +1.5 364,112 - BPHYT_RS01605 0.44 +0.7 364,179 + BPHYT_RS01605 0.52 +0.3 364,180 - BPHYT_RS01605 0.52 -0.4 364,180 - BPHYT_RS01605 0.52 +0.6 364,356 + BPHYT_RS01605 0.74 -0.4 364,356 + BPHYT_RS01605 0.74 +1.0 364,426 - BPHYT_RS01605 0.83 +0.5 364,426 - BPHYT_RS01605 0.83 -0.6 364,710 + +0.5
Or see this region's nucleotide sequence