Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_614 and Ac3H11_615 are separated by 99 nucleotides
Ac3H11_614 - L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) <small>(from data)</small>, at 53,977 to 54,819
_614
Ac3H11_615 - L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) <small>(from data)</small>, at 54,919 to 55,869
_615
Position (kb) 53
54
55 Strain fitness (log2 ratio) -1
0
1
2 at 53.797 kb on + strand at 54.260 kb on + strand, within Ac3H11_614 at 54.260 kb on + strand, within Ac3H11_614 at 54.260 kb on + strand, within Ac3H11_614 at 54.261 kb on - strand, within Ac3H11_614 at 54.261 kb on - strand, within Ac3H11_614 at 54.261 kb on - strand, within Ac3H11_614 at 54.261 kb on - strand, within Ac3H11_614 at 54.261 kb on - strand, within Ac3H11_614 at 54.276 kb on + strand, within Ac3H11_614 at 54.404 kb on + strand, within Ac3H11_614 at 54.405 kb on - strand, within Ac3H11_614 at 54.405 kb on - strand, within Ac3H11_614 at 54.407 kb on + strand, within Ac3H11_614 at 54.407 kb on + strand, within Ac3H11_614 at 54.408 kb on - strand, within Ac3H11_614 at 54.432 kb on + strand, within Ac3H11_614 at 54.433 kb on - strand, within Ac3H11_614 at 54.433 kb on - strand, within Ac3H11_614 at 54.858 kb on + strand at 54.896 kb on - strand at 55.369 kb on + strand, within Ac3H11_615 at 55.370 kb on - strand, within Ac3H11_615 at 55.370 kb on - strand, within Ac3H11_615 at 55.498 kb on + strand, within Ac3H11_615 at 55.498 kb on + strand, within Ac3H11_615 at 55.505 kb on - strand, within Ac3H11_615
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 53,797 + +0.5 54,260 + Ac3H11_614 0.34 -0.4 54,260 + Ac3H11_614 0.34 +1.0 54,260 + Ac3H11_614 0.34 +0.2 54,261 - Ac3H11_614 0.34 +0.1 54,261 - Ac3H11_614 0.34 +1.6 54,261 - Ac3H11_614 0.34 +0.9 54,261 - Ac3H11_614 0.34 +0.9 54,261 - Ac3H11_614 0.34 +0.6 54,276 + Ac3H11_614 0.35 +0.1 54,404 + Ac3H11_614 0.51 +0.0 54,405 - Ac3H11_614 0.51 +1.3 54,405 - Ac3H11_614 0.51 -0.0 54,407 + Ac3H11_614 0.51 +0.2 54,407 + Ac3H11_614 0.51 -0.6 54,408 - Ac3H11_614 0.51 +1.9 54,432 + Ac3H11_614 0.54 -0.8 54,433 - Ac3H11_614 0.54 +0.5 54,433 - Ac3H11_614 0.54 +0.2 54,858 + -0.1 54,896 - +0.4 55,369 + Ac3H11_615 0.47 -0.7 55,370 - Ac3H11_615 0.47 -0.4 55,370 - Ac3H11_615 0.47 +0.4 55,498 + Ac3H11_615 0.61 -0.4 55,498 + Ac3H11_615 0.61 -0.1 55,505 - Ac3H11_615 0.62 +0.1
Or see this region's nucleotide sequence