Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_48

Experiment: 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_46 and Ac3H11_47 are separated by 47 nucleotidesAc3H11_47 and Ac3H11_48 are separated by 99 nucleotidesAc3H11_48 and Ac3H11_49 are separated by 200 nucleotides Ac3H11_46 - Cysteinyl-tRNA synthetase (EC 6.1.1.16), at 42,391 to 43,764 _46 Ac3H11_47 - DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 43,812 to 44,486 _47 Ac3H11_48 - Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2), at 44,586 to 45,563 _48 Ac3H11_49 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 45,764 to 47,614 _49 Position (kb) 44 45 46Strain fitness (log2 ratio) -2 -1 0 1 2at 43.824 kb on - strandat 43.982 kb on + strand, within Ac3H11_47at 44.151 kb on + strand, within Ac3H11_47at 44.152 kb on - strand, within Ac3H11_47at 44.295 kb on + strand, within Ac3H11_47at 44.314 kb on + strand, within Ac3H11_47at 44.361 kb on + strand, within Ac3H11_47at 44.361 kb on + strand, within Ac3H11_47at 44.445 kb on + strandat 44.481 kb on + strandat 44.481 kb on + strandat 44.481 kb on + strandat 45.565 kb on + strandat 45.570 kb on + strandat 45.570 kb on + strandat 45.570 kb on + strandat 45.570 kb on + strandat 45.570 kb on + strandat 45.570 kb on + strandat 45.571 kb on - strandat 45.571 kb on - strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.649 kb on + strandat 45.650 kb on - strandat 45.650 kb on - strandat 45.650 kb on - strandat 45.650 kb on - strandat 45.650 kb on - strandat 45.694 kb on + strandat 45.695 kb on - strandat 45.695 kb on - strandat 45.720 kb on + strandat 45.721 kb on - strandat 45.721 kb on - strandat 45.721 kb on - strandat 46.045 kb on + strand, within Ac3H11_49at 46.045 kb on + strand, within Ac3H11_49at 46.046 kb on - strand, within Ac3H11_49at 46.046 kb on - strand, within Ac3H11_49at 46.046 kb on - strand, within Ac3H11_49at 46.052 kb on + strand, within Ac3H11_49at 46.052 kb on + strand, within Ac3H11_49at 46.052 kb on + strand, within Ac3H11_49at 46.052 kb on + strand, within Ac3H11_49at 46.053 kb on - strand, within Ac3H11_49at 46.053 kb on - strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.076 kb on + strand, within Ac3H11_49at 46.077 kb on - strand, within Ac3H11_49at 46.077 kb on - strand, within Ac3H11_49at 46.077 kb on - strand, within Ac3H11_49at 46.077 kb on - strand, within Ac3H11_49at 46.077 kb on - strand, within Ac3H11_49at 46.077 kb on - strand, within Ac3H11_49at 46.112 kb on + strand, within Ac3H11_49at 46.113 kb on - strand, within Ac3H11_49at 46.113 kb on - strand, within Ac3H11_49at 46.136 kb on + strand, within Ac3H11_49at 46.136 kb on + strand, within Ac3H11_49at 46.136 kb on + strand, within Ac3H11_49at 46.136 kb on + strand, within Ac3H11_49at 46.136 kb on + strand, within Ac3H11_49at 46.136 kb on + strand, within Ac3H11_49at 46.137 kb on - strand, within Ac3H11_49at 46.181 kb on + strand, within Ac3H11_49at 46.182 kb on - strand, within Ac3H11_49at 46.249 kb on + strand, within Ac3H11_49at 46.250 kb on - strand, within Ac3H11_49at 46.250 kb on - strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.459 kb on + strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49at 46.460 kb on - strand, within Ac3H11_49

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
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43,824 - -0.4
43,982 + Ac3H11_47 0.25 -0.6
44,151 + Ac3H11_47 0.50 -1.5
44,152 - Ac3H11_47 0.50 -1.4
44,295 + Ac3H11_47 0.72 -1.5
44,314 + Ac3H11_47 0.74 +0.3
44,361 + Ac3H11_47 0.81 -0.7
44,361 + Ac3H11_47 0.81 -1.6
44,445 + +0.8
44,481 + +1.4
44,481 + +0.9
44,481 + -0.9
45,565 + -0.5
45,570 + -0.1
45,570 + -0.5
45,570 + -0.4
45,570 + +1.3
45,570 + +1.4
45,570 + +0.9
45,571 - -0.5
45,571 - +0.1
45,649 + +0.3
45,649 + +0.3
45,649 + -0.0
45,649 + -0.6
45,649 + +1.2
45,649 + -0.4
45,649 + -1.8
45,649 + -0.2
45,649 + -0.0
45,649 + -0.4
45,649 + -1.0
45,649 + +0.6
45,650 - +0.3
45,650 - -0.1
45,650 - -0.1
45,650 - +0.2
45,650 - -0.5
45,694 + +0.5
45,695 - -0.5
45,695 - -0.0
45,720 + +0.0
45,721 - -0.7
45,721 - -1.4
45,721 - +0.4
46,045 + Ac3H11_49 0.15 -0.4
46,045 + Ac3H11_49 0.15 -0.5
46,046 - Ac3H11_49 0.15 +0.1
46,046 - Ac3H11_49 0.15 +0.3
46,046 - Ac3H11_49 0.15 -0.2
46,052 + Ac3H11_49 0.16 -1.0
46,052 + Ac3H11_49 0.16 +0.7
46,052 + Ac3H11_49 0.16 +0.1
46,052 + Ac3H11_49 0.16 +0.2
46,053 - Ac3H11_49 0.16 -0.5
46,053 - Ac3H11_49 0.16 +0.2
46,076 + Ac3H11_49 0.17 -0.3
46,076 + Ac3H11_49 0.17 -0.3
46,076 + Ac3H11_49 0.17 +0.9
46,076 + Ac3H11_49 0.17 +0.5
46,076 + Ac3H11_49 0.17 +0.5
46,076 + Ac3H11_49 0.17 +0.3
46,076 + Ac3H11_49 0.17 -0.1
46,076 + Ac3H11_49 0.17 +0.3
46,076 + Ac3H11_49 0.17 +0.6
46,076 + Ac3H11_49 0.17 +0.1
46,076 + Ac3H11_49 0.17 +0.3
46,077 - Ac3H11_49 0.17 -0.4
46,077 - Ac3H11_49 0.17 +2.3
46,077 - Ac3H11_49 0.17 +0.4
46,077 - Ac3H11_49 0.17 -0.5
46,077 - Ac3H11_49 0.17 +0.3
46,077 - Ac3H11_49 0.17 -0.7
46,112 + Ac3H11_49 0.19 +0.3
46,113 - Ac3H11_49 0.19 -0.4
46,113 - Ac3H11_49 0.19 -0.8
46,136 + Ac3H11_49 0.20 -1.3
46,136 + Ac3H11_49 0.20 +0.5
46,136 + Ac3H11_49 0.20 -0.9
46,136 + Ac3H11_49 0.20 +0.9
46,136 + Ac3H11_49 0.20 +0.4
46,136 + Ac3H11_49 0.20 +0.3
46,137 - Ac3H11_49 0.20 -1.1
46,181 + Ac3H11_49 0.23 -1.4
46,182 - Ac3H11_49 0.23 -0.3
46,249 + Ac3H11_49 0.26 +0.1
46,250 - Ac3H11_49 0.26 -2.6
46,250 - Ac3H11_49 0.26 +0.2
46,459 + Ac3H11_49 0.38 -0.0
46,459 + Ac3H11_49 0.38 -1.1
46,459 + Ac3H11_49 0.38 -0.2
46,459 + Ac3H11_49 0.38 -0.3
46,459 + Ac3H11_49 0.38 +1.5
46,459 + Ac3H11_49 0.38 -0.3
46,459 + Ac3H11_49 0.38 -0.1
46,459 + Ac3H11_49 0.38 +0.1
46,459 + Ac3H11_49 0.38 +0.5
46,459 + Ac3H11_49 0.38 +1.3
46,459 + Ac3H11_49 0.38 +0.5
46,459 + Ac3H11_49 0.38 -0.0
46,460 - Ac3H11_49 0.38 +0.6
46,460 - Ac3H11_49 0.38 +0.5
46,460 - Ac3H11_49 0.38 +0.4
46,460 - Ac3H11_49 0.38 +0.8
46,460 - Ac3H11_49 0.38 -1.4
46,460 - Ac3H11_49 0.38 -0.9
46,460 - Ac3H11_49 0.38 -0.2
46,460 - Ac3H11_49 0.38 -0.2
46,460 - Ac3H11_49 0.38 -0.0
46,460 - Ac3H11_49 0.38 +0.6
46,460 - Ac3H11_49 0.38 -1.3

Or see this region's nucleotide sequence