Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3867

Experiment: 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3866 and Ac3H11_3867 are separated by 29 nucleotidesAc3H11_3867 and Ac3H11_3868 overlap by 9 nucleotides Ac3H11_3866 - Regulatory protein, LuxR, at 83,572 to 84,744 _3866 Ac3H11_3867 - hypothetical protein, at 84,774 to 84,926 _3867 Ac3H11_3868 - peptidase, M48 family( EC:3.4.24.- ), at 84,918 to 86,549 _3868 Position (kb) 84 85Strain fitness (log2 ratio) -2 -1 0 1 2at 83.791 kb on + strand, within Ac3H11_3866at 83.792 kb on - strand, within Ac3H11_3866at 83.792 kb on - strand, within Ac3H11_3866at 83.895 kb on + strand, within Ac3H11_3866at 83.932 kb on + strand, within Ac3H11_3866at 83.932 kb on + strand, within Ac3H11_3866at 83.932 kb on + strand, within Ac3H11_3866at 83.933 kb on - strand, within Ac3H11_3866at 84.016 kb on + strand, within Ac3H11_3866at 84.016 kb on + strand, within Ac3H11_3866at 84.016 kb on + strand, within Ac3H11_3866at 84.016 kb on + strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.211 kb on + strand, within Ac3H11_3866at 84.211 kb on + strand, within Ac3H11_3866at 84.670 kb on + strandat 84.671 kb on - strandat 84.671 kb on - strandat 84.671 kb on - strandat 84.757 kb on + strandat 85.002 kb on + strandat 85.003 kb on - strandat 85.089 kb on + strand, within Ac3H11_3868at 85.089 kb on + strand, within Ac3H11_3868at 85.089 kb on + strand, within Ac3H11_3868at 85.089 kb on + strand, within Ac3H11_3868at 85.090 kb on - strand, within Ac3H11_3868at 85.090 kb on - strand, within Ac3H11_3868at 85.090 kb on - strand, within Ac3H11_3868at 85.195 kb on - strand, within Ac3H11_3868at 85.195 kb on - strand, within Ac3H11_3868at 85.368 kb on + strand, within Ac3H11_3868at 85.369 kb on - strand, within Ac3H11_3868at 85.755 kb on + strand, within Ac3H11_3868at 85.812 kb on + strand, within Ac3H11_3868at 85.812 kb on + strand, within Ac3H11_3868at 85.813 kb on - strand, within Ac3H11_3868at 85.813 kb on - strand, within Ac3H11_3868at 85.813 kb on - strand, within Ac3H11_3868at 85.813 kb on - strand, within Ac3H11_3868at 85.813 kb on - strand, within Ac3H11_3868at 85.813 kb on - strand, within Ac3H11_3868at 85.891 kb on - strand, within Ac3H11_3868at 85.891 kb on - strand, within Ac3H11_3868at 85.891 kb on - strand, within Ac3H11_3868

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
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83,791 + Ac3H11_3866 0.19 +0.9
83,792 - Ac3H11_3866 0.19 +0.2
83,792 - Ac3H11_3866 0.19 +0.1
83,895 + Ac3H11_3866 0.28 -0.8
83,932 + Ac3H11_3866 0.31 -0.2
83,932 + Ac3H11_3866 0.31 -0.2
83,932 + Ac3H11_3866 0.31 +0.3
83,933 - Ac3H11_3866 0.31 -0.1
84,016 + Ac3H11_3866 0.38 +0.3
84,016 + Ac3H11_3866 0.38 +0.4
84,016 + Ac3H11_3866 0.38 +0.5
84,016 + Ac3H11_3866 0.38 -0.5
84,017 - Ac3H11_3866 0.38 +0.2
84,017 - Ac3H11_3866 0.38 +0.1
84,017 - Ac3H11_3866 0.38 -0.2
84,017 - Ac3H11_3866 0.38 +0.1
84,017 - Ac3H11_3866 0.38 -1.9
84,211 + Ac3H11_3866 0.54 -0.9
84,211 + Ac3H11_3866 0.54 +0.7
84,670 + +0.1
84,671 - -1.9
84,671 - +1.0
84,671 - +1.0
84,757 + -0.6
85,002 + +0.1
85,003 - -0.2
85,089 + Ac3H11_3868 0.10 +0.0
85,089 + Ac3H11_3868 0.10 -0.3
85,089 + Ac3H11_3868 0.10 -0.0
85,089 + Ac3H11_3868 0.10 -0.7
85,090 - Ac3H11_3868 0.11 -0.1
85,090 - Ac3H11_3868 0.11 +2.4
85,090 - Ac3H11_3868 0.11 -2.2
85,195 - Ac3H11_3868 0.17 +0.8
85,195 - Ac3H11_3868 0.17 -1.8
85,368 + Ac3H11_3868 0.28 -0.2
85,369 - Ac3H11_3868 0.28 -0.1
85,755 + Ac3H11_3868 0.51 -0.4
85,812 + Ac3H11_3868 0.55 +0.7
85,812 + Ac3H11_3868 0.55 -0.1
85,813 - Ac3H11_3868 0.55 -0.2
85,813 - Ac3H11_3868 0.55 +0.3
85,813 - Ac3H11_3868 0.55 -0.2
85,813 - Ac3H11_3868 0.55 +0.6
85,813 - Ac3H11_3868 0.55 -0.0
85,813 - Ac3H11_3868 0.55 +1.1
85,891 - Ac3H11_3868 0.60 +0.4
85,891 - Ac3H11_3868 0.60 -0.2
85,891 - Ac3H11_3868 0.60 +0.2

Or see this region's nucleotide sequence