Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3809

Experiment: 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3808 and Ac3H11_3809 overlap by 4 nucleotidesAc3H11_3809 and Ac3H11_3810 are separated by 175 nucleotidesAc3H11_3810 and Ac3H11_3811 are separated by 68 nucleotides Ac3H11_3808 - tungsten-containing formate dehydrogenase alpha subunit, at 20,822 to 23,707 _3808 Ac3H11_3809 - tungsten-containing formate dehydrogenase beta subunit, at 23,704 to 25,611 _3809 Ac3H11_3810 - Transcriptional regulator, TetR family, at 25,787 to 26,407 _3810 Ac3H11_3811 - putative membrane protein, at 26,476 to 26,883 _3811 Position (kb) 23 24 25 26Strain fitness (log2 ratio) -2 -1 0 1 2at 22.720 kb on - strand, within Ac3H11_3808at 22.791 kb on + strand, within Ac3H11_3808at 22.792 kb on - strand, within Ac3H11_3808at 22.887 kb on + strand, within Ac3H11_3808at 22.887 kb on + strand, within Ac3H11_3808at 22.888 kb on - strand, within Ac3H11_3808at 22.888 kb on - strand, within Ac3H11_3808at 22.888 kb on - strand, within Ac3H11_3808at 22.888 kb on - strand, within Ac3H11_3808at 22.888 kb on - strand, within Ac3H11_3808at 22.888 kb on - strand, within Ac3H11_3808at 22.888 kb on - strand, within Ac3H11_3808at 23.580 kb on + strandat 23.581 kb on - strandat 23.804 kb on + strandat 23.804 kb on + strandat 23.805 kb on - strandat 24.155 kb on + strand, within Ac3H11_3809at 24.155 kb on + strand, within Ac3H11_3809at 24.156 kb on - strand, within Ac3H11_3809at 24.156 kb on - strand, within Ac3H11_3809at 24.156 kb on - strand, within Ac3H11_3809at 24.156 kb on - strand, within Ac3H11_3809at 24.161 kb on + strand, within Ac3H11_3809at 24.161 kb on + strand, within Ac3H11_3809at 24.161 kb on + strand, within Ac3H11_3809at 24.162 kb on - strand, within Ac3H11_3809at 24.162 kb on - strand, within Ac3H11_3809at 24.162 kb on - strand, within Ac3H11_3809at 24.195 kb on - strand, within Ac3H11_3809at 24.356 kb on + strand, within Ac3H11_3809at 24.357 kb on - strand, within Ac3H11_3809at 24.416 kb on + strand, within Ac3H11_3809at 24.416 kb on + strand, within Ac3H11_3809at 24.417 kb on - strand, within Ac3H11_3809at 24.491 kb on + strand, within Ac3H11_3809at 24.491 kb on + strand, within Ac3H11_3809at 24.491 kb on + strand, within Ac3H11_3809at 24.492 kb on - strand, within Ac3H11_3809at 24.492 kb on - strand, within Ac3H11_3809at 24.492 kb on - strand, within Ac3H11_3809at 24.492 kb on - strand, within Ac3H11_3809at 24.492 kb on - strand, within Ac3H11_3809at 24.594 kb on - strand, within Ac3H11_3809at 24.608 kb on + strand, within Ac3H11_3809at 24.608 kb on + strand, within Ac3H11_3809at 24.608 kb on + strand, within Ac3H11_3809at 24.609 kb on - strand, within Ac3H11_3809at 24.609 kb on - strand, within Ac3H11_3809at 24.609 kb on - strand, within Ac3H11_3809at 24.609 kb on - strand, within Ac3H11_3809at 24.612 kb on + strand, within Ac3H11_3809at 24.612 kb on + strand, within Ac3H11_3809at 24.612 kb on + strand, within Ac3H11_3809at 24.612 kb on + strand, within Ac3H11_3809at 24.612 kb on + strand, within Ac3H11_3809at 24.612 kb on + strand, within Ac3H11_3809at 24.612 kb on + strand, within Ac3H11_3809at 24.612 kb on + strand, within Ac3H11_3809at 24.612 kb on + strand, within Ac3H11_3809at 24.613 kb on - strand, within Ac3H11_3809at 24.613 kb on - strand, within Ac3H11_3809at 24.613 kb on - strand, within Ac3H11_3809at 24.613 kb on - strand, within Ac3H11_3809at 24.613 kb on - strand, within Ac3H11_3809at 24.613 kb on - strand, within Ac3H11_3809at 24.613 kb on - strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.689 kb on + strand, within Ac3H11_3809at 24.689 kb on + strand, within Ac3H11_3809at 24.911 kb on + strand, within Ac3H11_3809at 24.911 kb on + strand, within Ac3H11_3809at 25.310 kb on + strand, within Ac3H11_3809at 25.311 kb on - strand, within Ac3H11_3809at 25.311 kb on - strand, within Ac3H11_3809at 25.311 kb on - strand, within Ac3H11_3809at 25.328 kb on + strand, within Ac3H11_3809at 25.328 kb on + strand, within Ac3H11_3809at 25.328 kb on + strand, within Ac3H11_3809at 25.329 kb on - strand, within Ac3H11_3809at 25.421 kb on + strandat 25.643 kb on + strandat 25.644 kb on - strandat 25.644 kb on - strandat 25.644 kb on - strandat 25.644 kb on - strandat 25.644 kb on - strandat 25.659 kb on + strandat 25.659 kb on + strandat 25.768 kb on + strandat 25.768 kb on + strandat 25.769 kb on - strandat 25.769 kb on - strandat 25.769 kb on - strandat 26.121 kb on + strand, within Ac3H11_3810at 26.122 kb on - strand, within Ac3H11_3810at 26.376 kb on + strandat 26.376 kb on + strandat 26.377 kb on - strandat 26.377 kb on - strandat 26.377 kb on - strandat 26.399 kb on + strandat 26.400 kb on - strandat 26.400 kb on - strandat 26.433 kb on + strandat 26.433 kb on + strandat 26.434 kb on - strandat 26.447 kb on - strandat 26.457 kb on - strandat 26.471 kb on - strandat 26.471 kb on - strandat 26.502 kb on + strandat 26.560 kb on + strand, within Ac3H11_3811at 26.560 kb on + strand, within Ac3H11_3811at 26.560 kb on + strand, within Ac3H11_3811at 26.560 kb on + strand, within Ac3H11_3811at 26.561 kb on - strand, within Ac3H11_3811at 26.561 kb on - strand, within Ac3H11_3811at 26.561 kb on - strand, within Ac3H11_3811at 26.561 kb on - strand, within Ac3H11_3811at 26.572 kb on + strand, within Ac3H11_3811at 26.573 kb on - strand, within Ac3H11_3811at 26.573 kb on - strand, within Ac3H11_3811at 26.573 kb on - strand, within Ac3H11_3811

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
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22,720 - Ac3H11_3808 0.66 -0.5
22,791 + Ac3H11_3808 0.68 -0.3
22,792 - Ac3H11_3808 0.68 -0.2
22,887 + Ac3H11_3808 0.72 -0.3
22,887 + Ac3H11_3808 0.72 -0.9
22,888 - Ac3H11_3808 0.72 -0.7
22,888 - Ac3H11_3808 0.72 +0.2
22,888 - Ac3H11_3808 0.72 -0.5
22,888 - Ac3H11_3808 0.72 -0.9
22,888 - Ac3H11_3808 0.72 +0.1
22,888 - Ac3H11_3808 0.72 +0.7
22,888 - Ac3H11_3808 0.72 -0.1
23,580 + -1.6
23,581 - +0.2
23,804 + +0.4
23,804 + +0.5
23,805 - +1.0
24,155 + Ac3H11_3809 0.24 +0.4
24,155 + Ac3H11_3809 0.24 -0.5
24,156 - Ac3H11_3809 0.24 -1.0
24,156 - Ac3H11_3809 0.24 -0.7
24,156 - Ac3H11_3809 0.24 +1.4
24,156 - Ac3H11_3809 0.24 +0.2
24,161 + Ac3H11_3809 0.24 -0.2
24,161 + Ac3H11_3809 0.24 -0.2
24,161 + Ac3H11_3809 0.24 +0.3
24,162 - Ac3H11_3809 0.24 +0.3
24,162 - Ac3H11_3809 0.24 +0.3
24,162 - Ac3H11_3809 0.24 +1.2
24,195 - Ac3H11_3809 0.26 -0.3
24,356 + Ac3H11_3809 0.34 +0.2
24,357 - Ac3H11_3809 0.34 +1.0
24,416 + Ac3H11_3809 0.37 +1.0
24,416 + Ac3H11_3809 0.37 -0.5
24,417 - Ac3H11_3809 0.37 -0.7
24,491 + Ac3H11_3809 0.41 -0.3
24,491 + Ac3H11_3809 0.41 +0.3
24,491 + Ac3H11_3809 0.41 +0.8
24,492 - Ac3H11_3809 0.41 +0.3
24,492 - Ac3H11_3809 0.41 +0.1
24,492 - Ac3H11_3809 0.41 -0.5
24,492 - Ac3H11_3809 0.41 -0.2
24,492 - Ac3H11_3809 0.41 +0.4
24,594 - Ac3H11_3809 0.47 +0.1
24,608 + Ac3H11_3809 0.47 -0.6
24,608 + Ac3H11_3809 0.47 -0.6
24,608 + Ac3H11_3809 0.47 +0.2
24,609 - Ac3H11_3809 0.47 +1.1
24,609 - Ac3H11_3809 0.47 +1.2
24,609 - Ac3H11_3809 0.47 +1.0
24,609 - Ac3H11_3809 0.47 +0.3
24,612 + Ac3H11_3809 0.48 -0.2
24,612 + Ac3H11_3809 0.48 +1.6
24,612 + Ac3H11_3809 0.48 +0.6
24,612 + Ac3H11_3809 0.48 -0.4
24,612 + Ac3H11_3809 0.48 +0.5
24,612 + Ac3H11_3809 0.48 +0.3
24,612 + Ac3H11_3809 0.48 +0.4
24,612 + Ac3H11_3809 0.48 -0.3
24,612 + Ac3H11_3809 0.48 +0.5
24,613 - Ac3H11_3809 0.48 +0.4
24,613 - Ac3H11_3809 0.48 -1.0
24,613 - Ac3H11_3809 0.48 -0.9
24,613 - Ac3H11_3809 0.48 -0.1
24,613 - Ac3H11_3809 0.48 -1.8
24,613 - Ac3H11_3809 0.48 -0.0
24,613 - Ac3H11_3809 0.48 -0.1
24,614 + Ac3H11_3809 0.48 -0.2
24,614 + Ac3H11_3809 0.48 -0.3
24,614 + Ac3H11_3809 0.48 +0.2
24,614 + Ac3H11_3809 0.48 -0.1
24,614 + Ac3H11_3809 0.48 -2.4
24,614 + Ac3H11_3809 0.48 +0.0
24,614 + Ac3H11_3809 0.48 +0.3
24,614 + Ac3H11_3809 0.48 -0.0
24,614 + Ac3H11_3809 0.48 -1.3
24,614 + Ac3H11_3809 0.48 -0.4
24,614 + Ac3H11_3809 0.48 +0.2
24,614 + Ac3H11_3809 0.48 +0.1
24,614 + Ac3H11_3809 0.48 -1.4
24,614 + Ac3H11_3809 0.48 -0.5
24,614 + Ac3H11_3809 0.48 +0.2
24,614 + Ac3H11_3809 0.48 +1.0
24,614 + Ac3H11_3809 0.48 +0.8
24,614 + Ac3H11_3809 0.48 -1.3
24,614 + Ac3H11_3809 0.48 +0.1
24,614 + Ac3H11_3809 0.48 -1.1
24,614 + Ac3H11_3809 0.48 +1.3
24,614 + Ac3H11_3809 0.48 -0.8
24,614 + Ac3H11_3809 0.48 +0.7
24,614 + Ac3H11_3809 0.48 +0.1
24,614 + Ac3H11_3809 0.48 +0.2
24,614 + Ac3H11_3809 0.48 +0.7
24,614 + Ac3H11_3809 0.48 -2.1
24,614 + Ac3H11_3809 0.48 +0.3
24,615 - Ac3H11_3809 0.48 +0.3
24,615 - Ac3H11_3809 0.48 +1.2
24,615 - Ac3H11_3809 0.48 -0.2
24,615 - Ac3H11_3809 0.48 +0.0
24,615 - Ac3H11_3809 0.48 -0.2
24,615 - Ac3H11_3809 0.48 -0.9
24,615 - Ac3H11_3809 0.48 +1.4
24,615 - Ac3H11_3809 0.48 -0.4
24,615 - Ac3H11_3809 0.48 +0.9
24,615 - Ac3H11_3809 0.48 -0.5
24,615 - Ac3H11_3809 0.48 -0.4
24,615 - Ac3H11_3809 0.48 -0.7
24,615 - Ac3H11_3809 0.48 +0.1
24,615 - Ac3H11_3809 0.48 -0.2
24,615 - Ac3H11_3809 0.48 +0.9
24,615 - Ac3H11_3809 0.48 +1.8
24,615 - Ac3H11_3809 0.48 +0.3
24,615 - Ac3H11_3809 0.48 +0.1
24,615 - Ac3H11_3809 0.48 +0.4
24,615 - Ac3H11_3809 0.48 +0.2
24,615 - Ac3H11_3809 0.48 +0.7
24,615 - Ac3H11_3809 0.48 -1.2
24,615 - Ac3H11_3809 0.48 +0.3
24,615 - Ac3H11_3809 0.48 -0.0
24,689 + Ac3H11_3809 0.52 +0.7
24,689 + Ac3H11_3809 0.52 -0.8
24,911 + Ac3H11_3809 0.63 -0.3
24,911 + Ac3H11_3809 0.63 +0.2
25,310 + Ac3H11_3809 0.84 -1.3
25,311 - Ac3H11_3809 0.84 -0.1
25,311 - Ac3H11_3809 0.84 -0.7
25,311 - Ac3H11_3809 0.84 -0.5
25,328 + Ac3H11_3809 0.85 +0.2
25,328 + Ac3H11_3809 0.85 +0.8
25,328 + Ac3H11_3809 0.85 +0.5
25,329 - Ac3H11_3809 0.85 -0.5
25,421 + -0.5
25,643 + -0.6
25,644 - -0.6
25,644 - -0.6
25,644 - -0.4
25,644 - -0.1
25,644 - +0.5
25,659 + -1.7
25,659 + -0.6
25,768 + -0.4
25,768 + -0.9
25,769 - +0.1
25,769 - -1.3
25,769 - -1.0
26,121 + Ac3H11_3810 0.54 +0.3
26,122 - Ac3H11_3810 0.54 +1.9
26,376 + +0.1
26,376 + -1.2
26,377 - -1.7
26,377 - -0.1
26,377 - -1.1
26,399 + +0.6
26,400 - +0.2
26,400 - -0.4
26,433 + -0.0
26,433 + -0.6
26,434 - -0.6
26,447 - -0.8
26,457 - -1.1
26,471 - -0.3
26,471 - -0.5
26,502 + -0.5
26,560 + Ac3H11_3811 0.21 +0.0
26,560 + Ac3H11_3811 0.21 +1.4
26,560 + Ac3H11_3811 0.21 -1.1
26,560 + Ac3H11_3811 0.21 +0.1
26,561 - Ac3H11_3811 0.21 -0.2
26,561 - Ac3H11_3811 0.21 -0.0
26,561 - Ac3H11_3811 0.21 -0.1
26,561 - Ac3H11_3811 0.21 +1.3
26,572 + Ac3H11_3811 0.24 +0.3
26,573 - Ac3H11_3811 0.24 -0.6
26,573 - Ac3H11_3811 0.24 +0.8
26,573 - Ac3H11_3811 0.24 +0.3

Or see this region's nucleotide sequence