Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_299

Experiment: 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_298 and Ac3H11_299 are separated by 102 nucleotidesAc3H11_299 and Ac3H11_300 are separated by 91 nucleotides Ac3H11_298 - EAL domain protein, at 118,905 to 120,173 _298 Ac3H11_299 - EAL domain protein, at 120,276 to 121,556 _299 Ac3H11_300 - Tricarboxylate transport protein TctC, at 121,648 to 122,637 _300 Position (kb) 120 121 122Strain fitness (log2 ratio) -2 -1 0 1 2at 119.334 kb on + strand, within Ac3H11_298at 119.334 kb on + strand, within Ac3H11_298at 119.334 kb on + strand, within Ac3H11_298at 119.335 kb on - strand, within Ac3H11_298at 119.335 kb on - strand, within Ac3H11_298at 119.361 kb on + strand, within Ac3H11_298at 119.361 kb on + strand, within Ac3H11_298at 119.361 kb on + strand, within Ac3H11_298at 119.362 kb on - strand, within Ac3H11_298at 119.362 kb on - strand, within Ac3H11_298at 119.362 kb on - strand, within Ac3H11_298at 119.362 kb on - strand, within Ac3H11_298at 119.362 kb on - strand, within Ac3H11_298at 119.362 kb on - strand, within Ac3H11_298at 119.362 kb on - strand, within Ac3H11_298at 119.418 kb on + strand, within Ac3H11_298at 119.419 kb on - strand, within Ac3H11_298at 119.478 kb on + strand, within Ac3H11_298at 119.478 kb on + strand, within Ac3H11_298at 119.478 kb on + strand, within Ac3H11_298at 119.479 kb on - strand, within Ac3H11_298at 119.479 kb on - strand, within Ac3H11_298at 119.479 kb on - strand, within Ac3H11_298at 120.236 kb on + strandat 120.236 kb on + strandat 120.236 kb on + strandat 120.236 kb on + strandat 120.236 kb on + strandat 120.236 kb on + strandat 120.237 kb on - strandat 120.237 kb on - strandat 120.263 kb on + strandat 120.394 kb on - strandat 120.400 kb on - strandat 120.480 kb on + strand, within Ac3H11_299at 120.480 kb on + strand, within Ac3H11_299at 120.481 kb on - strand, within Ac3H11_299at 120.481 kb on - strand, within Ac3H11_299at 120.481 kb on - strand, within Ac3H11_299at 120.714 kb on + strand, within Ac3H11_299at 120.715 kb on - strand, within Ac3H11_299at 120.715 kb on - strand, within Ac3H11_299at 120.715 kb on - strand, within Ac3H11_299at 120.715 kb on - strand, within Ac3H11_299at 120.859 kb on - strand, within Ac3H11_299at 120.859 kb on - strand, within Ac3H11_299at 120.859 kb on - strand, within Ac3H11_299at 120.901 kb on - strand, within Ac3H11_299at 121.576 kb on + strandat 121.576 kb on + strandat 121.576 kb on + strandat 121.577 kb on - strandat 121.577 kb on - strandat 121.646 kb on + strandat 121.647 kb on - strandat 121.647 kb on - strandat 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 122.030 kb on + strand, within Ac3H11_300at 122.030 kb on + strand, within Ac3H11_300at 122.031 kb on - strand, within Ac3H11_300at 122.075 kb on + strand, within Ac3H11_300at 122.075 kb on + strand, within Ac3H11_300at 122.075 kb on + strand, within Ac3H11_300at 122.076 kb on - strand, within Ac3H11_300at 122.076 kb on - strand, within Ac3H11_300at 122.076 kb on - strand, within Ac3H11_300at 122.076 kb on - strand, within Ac3H11_300at 122.076 kb on - strand, within Ac3H11_300at 122.076 kb on - strand, within Ac3H11_300at 122.258 kb on + strand, within Ac3H11_300at 122.258 kb on + strand, within Ac3H11_300at 122.258 kb on + strand, within Ac3H11_300at 122.258 kb on + strand, within Ac3H11_300at 122.258 kb on + strand, within Ac3H11_300at 122.259 kb on - strand, within Ac3H11_300at 122.259 kb on - strand, within Ac3H11_300at 122.259 kb on - strand, within Ac3H11_300at 122.259 kb on - strand, within Ac3H11_300at 122.259 kb on - strand, within Ac3H11_300at 122.259 kb on - strand, within Ac3H11_300at 122.259 kb on - strand, within Ac3H11_300at 122.259 kb on - strand, within Ac3H11_300at 122.363 kb on + strand, within Ac3H11_300at 122.363 kb on + strand, within Ac3H11_300at 122.363 kb on + strand, within Ac3H11_300at 122.363 kb on + strand, within Ac3H11_300at 122.364 kb on - strand, within Ac3H11_300at 122.364 kb on - strand, within Ac3H11_300at 122.526 kb on + strand, within Ac3H11_300

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
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119,334 + Ac3H11_298 0.34 +2.5
119,334 + Ac3H11_298 0.34 +0.5
119,334 + Ac3H11_298 0.34 +1.3
119,335 - Ac3H11_298 0.34 -0.4
119,335 - Ac3H11_298 0.34 -0.5
119,361 + Ac3H11_298 0.36 -0.1
119,361 + Ac3H11_298 0.36 +0.6
119,361 + Ac3H11_298 0.36 -0.4
119,362 - Ac3H11_298 0.36 -0.2
119,362 - Ac3H11_298 0.36 +0.2
119,362 - Ac3H11_298 0.36 -0.4
119,362 - Ac3H11_298 0.36 -0.4
119,362 - Ac3H11_298 0.36 +0.1
119,362 - Ac3H11_298 0.36 +0.6
119,362 - Ac3H11_298 0.36 -0.9
119,418 + Ac3H11_298 0.40 -0.1
119,419 - Ac3H11_298 0.41 +0.3
119,478 + Ac3H11_298 0.45 +0.6
119,478 + Ac3H11_298 0.45 -0.9
119,478 + Ac3H11_298 0.45 +0.0
119,479 - Ac3H11_298 0.45 +0.2
119,479 - Ac3H11_298 0.45 +0.6
119,479 - Ac3H11_298 0.45 -0.5
120,236 + -0.7
120,236 + +0.0
120,236 + +0.2
120,236 + -0.3
120,236 + -0.0
120,236 + -0.3
120,237 - -0.2
120,237 - +0.4
120,263 + +0.3
120,394 - -0.8
120,400 - -0.2
120,480 + Ac3H11_299 0.16 -1.4
120,480 + Ac3H11_299 0.16 -0.6
120,481 - Ac3H11_299 0.16 -0.3
120,481 - Ac3H11_299 0.16 +0.5
120,481 - Ac3H11_299 0.16 -0.3
120,714 + Ac3H11_299 0.34 +0.3
120,715 - Ac3H11_299 0.34 -1.0
120,715 - Ac3H11_299 0.34 +0.2
120,715 - Ac3H11_299 0.34 -0.4
120,715 - Ac3H11_299 0.34 -0.9
120,859 - Ac3H11_299 0.46 -0.5
120,859 - Ac3H11_299 0.46 +0.4
120,859 - Ac3H11_299 0.46 +0.0
120,901 - Ac3H11_299 0.49 -0.2
121,576 + +0.2
121,576 + +0.0
121,576 + -0.4
121,577 - +0.3
121,577 - -1.1
121,646 + -0.7
121,647 - -0.2
121,647 - -0.1
121,859 + Ac3H11_300 0.21 -0.3
121,859 + Ac3H11_300 0.21 +0.2
121,859 + Ac3H11_300 0.21 +0.4
121,859 + Ac3H11_300 0.21 -0.4
121,859 + Ac3H11_300 0.21 +0.2
121,859 + Ac3H11_300 0.21 +1.0
121,859 + Ac3H11_300 0.21 +0.7
121,859 + Ac3H11_300 0.21 +0.6
121,859 + Ac3H11_300 0.21 -0.4
121,859 + Ac3H11_300 0.21 +0.1
121,859 + Ac3H11_300 0.21 -0.2
121,859 + Ac3H11_300 0.21 +0.3
121,859 + Ac3H11_300 0.21 +0.4
121,859 + Ac3H11_300 0.21 -0.5
121,859 + Ac3H11_300 0.21 -0.9
121,859 + Ac3H11_300 0.21 +0.1
121,860 - Ac3H11_300 0.21 +0.3
121,860 - Ac3H11_300 0.21 -0.5
121,860 - Ac3H11_300 0.21 +0.2
121,860 - Ac3H11_300 0.21 -0.7
121,860 - Ac3H11_300 0.21 -0.7
121,860 - Ac3H11_300 0.21 -2.0
121,860 - Ac3H11_300 0.21 -0.3
121,860 - Ac3H11_300 0.21 +0.3
121,860 - Ac3H11_300 0.21 -0.2
121,860 - Ac3H11_300 0.21 +0.2
121,860 - Ac3H11_300 0.21 +0.0
122,030 + Ac3H11_300 0.39 -0.4
122,030 + Ac3H11_300 0.39 +1.5
122,031 - Ac3H11_300 0.39 -0.5
122,075 + Ac3H11_300 0.43 -1.2
122,075 + Ac3H11_300 0.43 +0.3
122,075 + Ac3H11_300 0.43 -1.9
122,076 - Ac3H11_300 0.43 +0.3
122,076 - Ac3H11_300 0.43 +0.3
122,076 - Ac3H11_300 0.43 -0.5
122,076 - Ac3H11_300 0.43 -2.1
122,076 - Ac3H11_300 0.43 -0.7
122,076 - Ac3H11_300 0.43 +0.4
122,258 + Ac3H11_300 0.62 -0.1
122,258 + Ac3H11_300 0.62 +0.4
122,258 + Ac3H11_300 0.62 -1.1
122,258 + Ac3H11_300 0.62 +0.2
122,258 + Ac3H11_300 0.62 +0.4
122,259 - Ac3H11_300 0.62 +0.1
122,259 - Ac3H11_300 0.62 +0.6
122,259 - Ac3H11_300 0.62 -2.2
122,259 - Ac3H11_300 0.62 +0.1
122,259 - Ac3H11_300 0.62 +0.9
122,259 - Ac3H11_300 0.62 +0.0
122,259 - Ac3H11_300 0.62 +0.6
122,259 - Ac3H11_300 0.62 +0.7
122,363 + Ac3H11_300 0.72 +0.8
122,363 + Ac3H11_300 0.72 +0.2
122,363 + Ac3H11_300 0.72 -0.8
122,363 + Ac3H11_300 0.72 -0.4
122,364 - Ac3H11_300 0.72 -0.8
122,364 - Ac3H11_300 0.72 +0.3
122,526 + Ac3H11_300 0.89 +1.0

Or see this region's nucleotide sequence