Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2190

Experiment: 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2188 and Ac3H11_2189 are separated by 45 nucleotidesAc3H11_2189 and Ac3H11_2190 are separated by 171 nucleotidesAc3H11_2190 and Ac3H11_2191 are separated by 136 nucleotidesAc3H11_2191 and Ac3H11_2192 are separated by 27 nucleotides Ac3H11_2188 - Ni,Fe-hydrogenase I cytochrome b subunit, at 419,553 to 420,098 _2188 Ac3H11_2189 - hypothetical protein, at 420,144 to 420,401 _2189 Ac3H11_2190 - Permease of the drug/metabolite transporter (DMT) superfamily, at 420,573 to 421,487 _2190 Ac3H11_2191 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 421,624 to 422,067 _2191 Ac3H11_2192 - FIG000557: hypothetical protein co-occurring with RecR, at 422,095 to 422,943 _2192 Position (kb) 420 421 422Strain fitness (log2 ratio) -1 0 1 2 3at 419.950 kb on + strand, within Ac3H11_2188at 419.950 kb on + strand, within Ac3H11_2188at 419.951 kb on - strand, within Ac3H11_2188at 419.951 kb on - strand, within Ac3H11_2188at 420.115 kb on - strandat 420.145 kb on + strandat 420.146 kb on - strandat 420.146 kb on - strandat 420.184 kb on + strand, within Ac3H11_2189at 420.184 kb on + strand, within Ac3H11_2189at 420.184 kb on + strand, within Ac3H11_2189at 420.184 kb on + strand, within Ac3H11_2189at 420.184 kb on + strand, within Ac3H11_2189at 420.185 kb on - strand, within Ac3H11_2189at 420.185 kb on - strand, within Ac3H11_2189at 420.185 kb on - strand, within Ac3H11_2189at 420.185 kb on - strand, within Ac3H11_2189at 420.185 kb on - strand, within Ac3H11_2189at 420.185 kb on - strand, within Ac3H11_2189at 420.185 kb on - strand, within Ac3H11_2189at 420.185 kb on - strand, within Ac3H11_2189at 420.185 kb on - strand, within Ac3H11_2189at 420.221 kb on - strand, within Ac3H11_2189at 420.230 kb on - strand, within Ac3H11_2189at 420.268 kb on + strand, within Ac3H11_2189at 420.471 kb on + strandat 420.472 kb on - strandat 420.472 kb on - strandat 420.476 kb on + strandat 420.476 kb on + strandat 420.476 kb on + strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.752 kb on - strand, within Ac3H11_2190at 420.752 kb on - strand, within Ac3H11_2190at 420.778 kb on + strand, within Ac3H11_2190at 420.778 kb on + strand, within Ac3H11_2190at 420.778 kb on + strand, within Ac3H11_2190at 420.778 kb on + strand, within Ac3H11_2190at 420.778 kb on + strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.806 kb on - strand, within Ac3H11_2190at 420.806 kb on - strand, within Ac3H11_2190at 420.806 kb on - strand, within Ac3H11_2190at 420.806 kb on - strand, within Ac3H11_2190at 420.817 kb on + strand, within Ac3H11_2190at 420.817 kb on + strand, within Ac3H11_2190at 420.817 kb on + strand, within Ac3H11_2190at 420.817 kb on + strand, within Ac3H11_2190at 420.817 kb on + strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 421.042 kb on + strand, within Ac3H11_2190at 421.043 kb on - strand, within Ac3H11_2190at 421.195 kb on + strand, within Ac3H11_2190at 421.196 kb on - strand, within Ac3H11_2190at 421.196 kb on - strand, within Ac3H11_2190at 421.196 kb on - strand, within Ac3H11_2190at 421.231 kb on + strand, within Ac3H11_2190at 421.232 kb on - strand, within Ac3H11_2190at 421.232 kb on - strand, within Ac3H11_2190at 421.437 kb on + strandat 421.438 kb on - strandat 421.487 kb on + strandat 421.487 kb on + strandat 421.488 kb on - strandat 421.488 kb on - strandat 421.488 kb on - strandat 421.526 kb on + strandat 421.527 kb on - strandat 421.527 kb on - strandat 421.527 kb on - strandat 421.528 kb on + strandat 421.561 kb on - strandat 421.561 kb on - strandat 421.563 kb on + strandat 421.563 kb on + strandat 421.778 kb on + strand, within Ac3H11_2191at 421.804 kb on + strand, within Ac3H11_2191

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
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419,950 + Ac3H11_2188 0.73 +0.3
419,950 + Ac3H11_2188 0.73 +0.4
419,951 - Ac3H11_2188 0.73 +0.8
419,951 - Ac3H11_2188 0.73 +0.1
420,115 - +0.5
420,145 + +0.2
420,146 - +0.7
420,146 - +0.5
420,184 + Ac3H11_2189 0.16 +0.1
420,184 + Ac3H11_2189 0.16 -0.3
420,184 + Ac3H11_2189 0.16 -0.1
420,184 + Ac3H11_2189 0.16 +1.2
420,184 + Ac3H11_2189 0.16 -0.3
420,185 - Ac3H11_2189 0.16 +0.4
420,185 - Ac3H11_2189 0.16 +0.4
420,185 - Ac3H11_2189 0.16 +0.7
420,185 - Ac3H11_2189 0.16 +1.0
420,185 - Ac3H11_2189 0.16 +1.1
420,185 - Ac3H11_2189 0.16 +0.4
420,185 - Ac3H11_2189 0.16 +1.0
420,185 - Ac3H11_2189 0.16 +0.6
420,185 - Ac3H11_2189 0.16 +0.7
420,221 - Ac3H11_2189 0.30 +0.7
420,230 - Ac3H11_2189 0.33 +1.0
420,268 + Ac3H11_2189 0.48 +0.3
420,471 + +0.3
420,472 - +1.1
420,472 - +0.9
420,476 + -0.0
420,476 + +0.1
420,476 + -0.4
420,477 - +0.9
420,477 - +0.9
420,477 - +1.0
420,477 - +1.1
420,477 - +0.1
420,477 - +1.0
420,477 - +0.8
420,477 - +1.1
420,477 - +1.0
420,477 - +1.3
420,477 - +1.0
420,477 - +1.1
420,477 - +1.0
420,477 - +1.4
420,477 - +1.2
420,752 - Ac3H11_2190 0.20 +0.4
420,752 - Ac3H11_2190 0.20 +0.4
420,778 + Ac3H11_2190 0.22 +0.6
420,778 + Ac3H11_2190 0.22 +0.6
420,778 + Ac3H11_2190 0.22 +0.8
420,778 + Ac3H11_2190 0.22 +0.2
420,778 + Ac3H11_2190 0.22 +0.3
420,779 - Ac3H11_2190 0.23 +0.7
420,779 - Ac3H11_2190 0.23 +0.5
420,779 - Ac3H11_2190 0.23 +0.1
420,779 - Ac3H11_2190 0.23 -0.3
420,779 - Ac3H11_2190 0.23 +0.2
420,779 - Ac3H11_2190 0.23 +0.3
420,779 - Ac3H11_2190 0.23 +0.5
420,779 - Ac3H11_2190 0.23 +0.0
420,806 - Ac3H11_2190 0.25 -0.1
420,806 - Ac3H11_2190 0.25 +0.1
420,806 - Ac3H11_2190 0.25 +0.1
420,806 - Ac3H11_2190 0.25 +0.4
420,817 + Ac3H11_2190 0.27 -0.0
420,817 + Ac3H11_2190 0.27 +0.6
420,817 + Ac3H11_2190 0.27 +0.8
420,817 + Ac3H11_2190 0.27 +0.1
420,817 + Ac3H11_2190 0.27 +1.2
420,818 - Ac3H11_2190 0.27 +0.5
420,818 - Ac3H11_2190 0.27 +0.3
420,818 - Ac3H11_2190 0.27 -0.8
420,818 - Ac3H11_2190 0.27 +0.0
420,818 - Ac3H11_2190 0.27 +0.0
420,818 - Ac3H11_2190 0.27 +0.0
420,818 - Ac3H11_2190 0.27 +0.1
420,818 - Ac3H11_2190 0.27 -0.1
420,818 - Ac3H11_2190 0.27 +0.1
420,818 - Ac3H11_2190 0.27 -0.0
420,818 - Ac3H11_2190 0.27 +0.5
420,818 - Ac3H11_2190 0.27 -0.1
421,042 + Ac3H11_2190 0.51 -0.3
421,043 - Ac3H11_2190 0.51 +0.7
421,195 + Ac3H11_2190 0.68 +0.9
421,196 - Ac3H11_2190 0.68 +0.6
421,196 - Ac3H11_2190 0.68 +1.2
421,196 - Ac3H11_2190 0.68 +2.9
421,231 + Ac3H11_2190 0.72 +0.9
421,232 - Ac3H11_2190 0.72 +0.6
421,232 - Ac3H11_2190 0.72 -0.1
421,437 + -0.6
421,438 - -0.2
421,487 + +0.7
421,487 + +1.6
421,488 - -0.4
421,488 - -0.3
421,488 - +0.5
421,526 + +0.2
421,527 - +0.2
421,527 - +0.1
421,527 - -0.3
421,528 + +0.7
421,561 - +0.3
421,561 - -0.8
421,563 + +0.8
421,563 + +0.1
421,778 + Ac3H11_2191 0.35 -1.5
421,804 + Ac3H11_2191 0.41 -0.3

Or see this region's nucleotide sequence