Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2183 and Ac3H11_2184 are separated by 229 nucleotides Ac3H11_2184 and Ac3H11_2185 are separated by 38 nucleotides Ac3H11_2185 and Ac3H11_2186 are separated by 53 nucleotides
Ac3H11_2183 - ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 412,487 to 413,671
_2183
Ac3H11_2184 - FIG00348557: hypothetical protein, at 413,901 to 416,738
_2184
Ac3H11_2185 - hypothetical secreted protein, at 416,777 to 417,499
_2185
Ac3H11_2186 - Sensor protein basS/pmrB (EC 2.7.3.-), at 417,553 to 418,854
_2186
Position (kb) 413
414
415
416
417 Strain fitness (log2 ratio) -1
0
1
2
3 at 413.112 kb on + strand, within Ac3H11_2183 at 413.113 kb on - strand, within Ac3H11_2183 at 413.187 kb on + strand, within Ac3H11_2183 at 413.188 kb on - strand, within Ac3H11_2183 at 413.482 kb on - strand, within Ac3H11_2183 at 413.482 kb on - strand, within Ac3H11_2183 at 413.482 kb on - strand, within Ac3H11_2183 at 413.482 kb on - strand, within Ac3H11_2183 at 413.741 kb on + strand at 413.742 kb on - strand at 413.742 kb on - strand at 413.742 kb on - strand at 414.157 kb on + strand at 414.157 kb on + strand at 414.157 kb on + strand at 414.157 kb on + strand at 414.348 kb on + strand, within Ac3H11_2184 at 414.348 kb on + strand, within Ac3H11_2184 at 414.397 kb on + strand, within Ac3H11_2184 at 414.398 kb on - strand, within Ac3H11_2184 at 414.694 kb on + strand, within Ac3H11_2184 at 415.109 kb on - strand, within Ac3H11_2184 at 415.109 kb on - strand, within Ac3H11_2184 at 415.109 kb on - strand, within Ac3H11_2184 at 415.347 kb on + strand, within Ac3H11_2184 at 415.348 kb on - strand, within Ac3H11_2184 at 415.348 kb on - strand, within Ac3H11_2184 at 415.375 kb on + strand, within Ac3H11_2184 at 415.376 kb on - strand, within Ac3H11_2184 at 416.269 kb on + strand, within Ac3H11_2184 at 416.353 kb on + strand, within Ac3H11_2184 at 416.354 kb on - strand, within Ac3H11_2184 at 416.738 kb on + strand at 416.738 kb on + strand at 416.738 kb on + strand at 416.738 kb on + strand at 416.739 kb on - strand at 416.766 kb on + strand at 416.766 kb on + strand at 416.766 kb on + strand at 416.767 kb on - strand at 416.767 kb on - strand at 416.767 kb on - strand at 416.767 kb on - strand at 417.181 kb on + strand, within Ac3H11_2185 at 417.182 kb on - strand, within Ac3H11_2185 at 417.263 kb on + strand, within Ac3H11_2185 at 417.263 kb on + strand, within Ac3H11_2185 at 417.264 kb on - strand, within Ac3H11_2185 at 417.525 kb on - strand at 417.686 kb on + strand, within Ac3H11_2186 at 417.686 kb on + strand, within Ac3H11_2186 at 417.687 kb on - strand, within Ac3H11_2186 at 417.687 kb on - strand, within Ac3H11_2186 at 417.687 kb on - strand, within Ac3H11_2186
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 413,112 + Ac3H11_2183 0.53 -0.4 413,113 - Ac3H11_2183 0.53 +3.5 413,187 + Ac3H11_2183 0.59 -0.6 413,188 - Ac3H11_2183 0.59 +0.1 413,482 - Ac3H11_2183 0.84 -0.1 413,482 - Ac3H11_2183 0.84 -0.6 413,482 - Ac3H11_2183 0.84 +0.1 413,482 - Ac3H11_2183 0.84 +0.5 413,741 + +0.9 413,742 - +0.1 413,742 - -0.6 413,742 - +0.5 414,157 + +0.2 414,157 + +0.8 414,157 + +0.7 414,157 + +0.0 414,348 + Ac3H11_2184 0.16 +0.9 414,348 + Ac3H11_2184 0.16 -0.6 414,397 + Ac3H11_2184 0.17 +0.2 414,398 - Ac3H11_2184 0.18 -0.6 414,694 + Ac3H11_2184 0.28 +0.6 415,109 - Ac3H11_2184 0.43 +0.7 415,109 - Ac3H11_2184 0.43 -0.4 415,109 - Ac3H11_2184 0.43 +0.9 415,347 + Ac3H11_2184 0.51 +0.6 415,348 - Ac3H11_2184 0.51 +0.1 415,348 - Ac3H11_2184 0.51 +0.9 415,375 + Ac3H11_2184 0.52 +0.8 415,376 - Ac3H11_2184 0.52 +0.4 416,269 + Ac3H11_2184 0.83 +1.3 416,353 + Ac3H11_2184 0.86 +1.7 416,354 - Ac3H11_2184 0.86 +0.5 416,738 + +0.3 416,738 + -0.6 416,738 + -0.3 416,738 + +0.1 416,739 - -0.5 416,766 + +0.2 416,766 + +1.0 416,766 + +0.1 416,767 - -0.1 416,767 - -0.5 416,767 - +0.6 416,767 - +0.8 417,181 + Ac3H11_2185 0.56 -0.1 417,182 - Ac3H11_2185 0.56 -0.5 417,263 + Ac3H11_2185 0.67 +0.5 417,263 + Ac3H11_2185 0.67 +0.4 417,264 - Ac3H11_2185 0.67 -1.0 417,525 - +0.5 417,686 + Ac3H11_2186 0.10 +0.3 417,686 + Ac3H11_2186 0.10 +0.0 417,687 - Ac3H11_2186 0.10 +1.1 417,687 - Ac3H11_2186 0.10 +1.3 417,687 - Ac3H11_2186 0.10 +1.2
Or see this region's nucleotide sequence