Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1985

Experiment: 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1984 and Ac3H11_1985 are separated by 166 nucleotidesAc3H11_1985 and Ac3H11_1986 are separated by 88 nucleotidesAc3H11_1986 and Ac3H11_1987 are separated by 92 nucleotides Ac3H11_1984 - tRNA pseudouridine synthase A (EC 4.2.1.70), at 200,187 to 200,981 _1984 Ac3H11_1985 - Metallo-beta-lactamase family protein, at 201,148 to 202,854 _1985 Ac3H11_1986 - Maleate cis-trans isomerase (EC 5.2.1.1), at 202,943 to 203,695 _1986 Ac3H11_1987 - Tricarboxylate transport protein TctC, at 203,788 to 204,750 _1987 Position (kb) 201 202 203Strain fitness (log2 ratio) -1 0 1at 200.154 kb on - strandat 200.213 kb on - strandat 200.533 kb on + strand, within Ac3H11_1984at 200.533 kb on + strand, within Ac3H11_1984at 200.533 kb on + strand, within Ac3H11_1984at 200.533 kb on + strand, within Ac3H11_1984at 200.534 kb on - strand, within Ac3H11_1984at 201.138 kb on + strandat 201.138 kb on + strandat 201.139 kb on - strandat 201.139 kb on - strandat 201.139 kb on - strandat 201.242 kb on + strandat 201.242 kb on + strandat 201.243 kb on - strandat 201.243 kb on - strandat 201.253 kb on + strandat 201.254 kb on - strandat 201.379 kb on + strand, within Ac3H11_1985at 201.379 kb on + strand, within Ac3H11_1985at 201.379 kb on + strand, within Ac3H11_1985at 201.379 kb on + strand, within Ac3H11_1985at 201.380 kb on - strand, within Ac3H11_1985at 201.380 kb on - strand, within Ac3H11_1985at 201.380 kb on - strand, within Ac3H11_1985at 201.380 kb on - strand, within Ac3H11_1985at 201.383 kb on + strand, within Ac3H11_1985at 201.383 kb on + strand, within Ac3H11_1985at 201.383 kb on + strand, within Ac3H11_1985at 201.383 kb on + strand, within Ac3H11_1985at 201.383 kb on + strand, within Ac3H11_1985at 201.383 kb on + strand, within Ac3H11_1985at 201.383 kb on + strand, within Ac3H11_1985at 201.383 kb on + strand, within Ac3H11_1985at 201.383 kb on + strand, within Ac3H11_1985at 201.383 kb on + strand, within Ac3H11_1985at 201.384 kb on - strand, within Ac3H11_1985at 201.384 kb on - strand, within Ac3H11_1985at 201.384 kb on - strand, within Ac3H11_1985at 201.384 kb on - strand, within Ac3H11_1985at 201.384 kb on - strand, within Ac3H11_1985at 201.384 kb on - strand, within Ac3H11_1985at 201.384 kb on - strand, within Ac3H11_1985at 201.384 kb on - strand, within Ac3H11_1985at 201.459 kb on - strand, within Ac3H11_1985at 201.604 kb on - strand, within Ac3H11_1985at 201.631 kb on - strand, within Ac3H11_1985at 201.661 kb on + strand, within Ac3H11_1985at 201.923 kb on + strand, within Ac3H11_1985at 201.923 kb on + strand, within Ac3H11_1985at 201.924 kb on - strand, within Ac3H11_1985at 201.924 kb on - strand, within Ac3H11_1985at 202.071 kb on - strand, within Ac3H11_1985at 202.092 kb on - strand, within Ac3H11_1985at 202.092 kb on - strand, within Ac3H11_1985at 202.092 kb on - strand, within Ac3H11_1985at 202.688 kb on + strandat 202.688 kb on + strandat 202.688 kb on + strandat 202.688 kb on + strandat 202.688 kb on + strandat 202.688 kb on + strandat 202.688 kb on + strandat 202.688 kb on + strandat 202.688 kb on + strandat 202.688 kb on + strandat 202.688 kb on + strandat 202.688 kb on + strandat 202.688 kb on + strandat 202.689 kb on - strandat 202.689 kb on - strandat 202.689 kb on - strandat 202.689 kb on - strandat 202.689 kb on - strandat 202.689 kb on - strandat 202.689 kb on - strandat 202.689 kb on - strandat 202.689 kb on - strandat 202.689 kb on - strandat 202.689 kb on - strandat 202.689 kb on - strandat 202.689 kb on - strandat 202.689 kb on - strandat 202.689 kb on - strandat 202.947 kb on + strandat 202.948 kb on - strandat 202.948 kb on - strandat 203.253 kb on + strand, within Ac3H11_1986at 203.253 kb on + strand, within Ac3H11_1986at 203.253 kb on + strand, within Ac3H11_1986at 203.254 kb on - strand, within Ac3H11_1986at 203.284 kb on + strand, within Ac3H11_1986at 203.284 kb on + strand, within Ac3H11_1986at 203.284 kb on + strand, within Ac3H11_1986at 203.284 kb on + strand, within Ac3H11_1986at 203.284 kb on + strand, within Ac3H11_1986at 203.285 kb on - strand, within Ac3H11_1986at 203.286 kb on + strand, within Ac3H11_1986at 203.286 kb on + strand, within Ac3H11_1986at 203.287 kb on - strand, within Ac3H11_1986at 203.287 kb on - strand, within Ac3H11_1986at 203.287 kb on - strand, within Ac3H11_1986at 203.464 kb on - strand, within Ac3H11_1986at 203.682 kb on + strandat 203.682 kb on + strandat 203.683 kb on - strandat 203.832 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
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200,154 - -0.5
200,213 - +1.1
200,533 + Ac3H11_1984 0.44 -0.1
200,533 + Ac3H11_1984 0.44 -0.9
200,533 + Ac3H11_1984 0.44 -0.3
200,533 + Ac3H11_1984 0.44 -0.1
200,534 - Ac3H11_1984 0.44 +0.3
201,138 + +0.6
201,138 + -0.1
201,139 - +0.7
201,139 - -0.2
201,139 - -0.3
201,242 + -0.5
201,242 + +0.2
201,243 - +0.3
201,243 - +0.3
201,253 + +0.8
201,254 - +0.9
201,379 + Ac3H11_1985 0.14 +1.1
201,379 + Ac3H11_1985 0.14 +0.1
201,379 + Ac3H11_1985 0.14 +0.9
201,379 + Ac3H11_1985 0.14 +1.1
201,380 - Ac3H11_1985 0.14 -0.6
201,380 - Ac3H11_1985 0.14 -0.5
201,380 - Ac3H11_1985 0.14 +0.5
201,380 - Ac3H11_1985 0.14 +0.4
201,383 + Ac3H11_1985 0.14 +0.1
201,383 + Ac3H11_1985 0.14 +0.2
201,383 + Ac3H11_1985 0.14 +0.0
201,383 + Ac3H11_1985 0.14 +0.1
201,383 + Ac3H11_1985 0.14 -0.2
201,383 + Ac3H11_1985 0.14 -0.5
201,383 + Ac3H11_1985 0.14 -0.7
201,383 + Ac3H11_1985 0.14 -0.2
201,383 + Ac3H11_1985 0.14 +0.6
201,383 + Ac3H11_1985 0.14 -0.1
201,384 - Ac3H11_1985 0.14 -1.1
201,384 - Ac3H11_1985 0.14 +0.3
201,384 - Ac3H11_1985 0.14 +0.1
201,384 - Ac3H11_1985 0.14 -0.1
201,384 - Ac3H11_1985 0.14 -0.3
201,384 - Ac3H11_1985 0.14 -0.5
201,384 - Ac3H11_1985 0.14 +0.2
201,384 - Ac3H11_1985 0.14 -0.9
201,459 - Ac3H11_1985 0.18 -0.9
201,604 - Ac3H11_1985 0.27 -0.5
201,631 - Ac3H11_1985 0.28 -0.2
201,661 + Ac3H11_1985 0.30 -0.4
201,923 + Ac3H11_1985 0.45 -0.4
201,923 + Ac3H11_1985 0.45 +0.1
201,924 - Ac3H11_1985 0.45 +0.5
201,924 - Ac3H11_1985 0.45 -0.0
202,071 - Ac3H11_1985 0.54 +0.4
202,092 - Ac3H11_1985 0.55 -0.3
202,092 - Ac3H11_1985 0.55 +0.1
202,092 - Ac3H11_1985 0.55 -0.2
202,688 + -0.3
202,688 + -0.1
202,688 + +0.3
202,688 + +0.5
202,688 + -1.2
202,688 + +0.7
202,688 + -0.2
202,688 + +0.6
202,688 + +0.1
202,688 + +0.2
202,688 + -0.7
202,688 + -0.2
202,688 + +0.6
202,689 - -0.3
202,689 - -0.2
202,689 - -0.0
202,689 - +0.9
202,689 - +0.3
202,689 - -0.1
202,689 - +0.1
202,689 - -0.5
202,689 - +0.1
202,689 - -0.2
202,689 - +0.0
202,689 - +0.6
202,689 - -0.5
202,689 - +0.3
202,689 - +1.6
202,947 + +0.1
202,948 - -0.1
202,948 - +0.1
203,253 + Ac3H11_1986 0.41 +0.7
203,253 + Ac3H11_1986 0.41 +0.4
203,253 + Ac3H11_1986 0.41 +0.9
203,254 - Ac3H11_1986 0.41 -0.0
203,284 + Ac3H11_1986 0.45 +0.8
203,284 + Ac3H11_1986 0.45 -0.6
203,284 + Ac3H11_1986 0.45 -0.4
203,284 + Ac3H11_1986 0.45 +0.3
203,284 + Ac3H11_1986 0.45 -0.1
203,285 - Ac3H11_1986 0.45 +0.6
203,286 + Ac3H11_1986 0.46 +0.1
203,286 + Ac3H11_1986 0.46 +1.5
203,287 - Ac3H11_1986 0.46 +0.8
203,287 - Ac3H11_1986 0.46 -0.5
203,287 - Ac3H11_1986 0.46 +0.6
203,464 - Ac3H11_1986 0.69 -1.3
203,682 + +0.2
203,682 + -0.5
203,683 - +0.2
203,832 - -0.3

Or see this region's nucleotide sequence