Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1334 and Ac3H11_1335 are separated by 90 nucleotides Ac3H11_1335 and Ac3H11_1336 are separated by 14 nucleotides Ac3H11_1336 and Ac3H11_1337 overlap by 4 nucleotides
Ac3H11_1334 - hypothetical protein, at 22,750 to 23,430
_1334
Ac3H11_1335 - hypothetical protein, at 23,521 to 23,763
_1335
Ac3H11_1336 - Ferrous iron transport protein B, at 23,778 to 25,703
_1336
Ac3H11_1337 - Ferrous iron transport protein, at 25,700 to 26,038
_1337
Position (kb)
23
24
25
26 Strain fitness (log2 ratio)
-1
0
1
2 at 22.779 kb on + strand at 22.780 kb on - strand at 22.780 kb on - strand at 22.780 kb on - strand at 22.894 kb on + strand, within Ac3H11_1334 at 22.895 kb on - strand, within Ac3H11_1334 at 23.017 kb on + strand, within Ac3H11_1334 at 23.017 kb on + strand, within Ac3H11_1334 at 23.018 kb on - strand, within Ac3H11_1334 at 23.018 kb on - strand, within Ac3H11_1334 at 23.018 kb on - strand, within Ac3H11_1334 at 23.018 kb on - strand, within Ac3H11_1334 at 23.018 kb on - strand, within Ac3H11_1334 at 23.222 kb on - strand, within Ac3H11_1334 at 23.222 kb on - strand, within Ac3H11_1334 at 23.222 kb on - strand, within Ac3H11_1334 at 23.222 kb on - strand, within Ac3H11_1334 at 23.222 kb on - strand, within Ac3H11_1334 at 23.254 kb on + strand, within Ac3H11_1334 at 23.254 kb on + strand, within Ac3H11_1334 at 23.254 kb on + strand, within Ac3H11_1334 at 23.278 kb on + strand, within Ac3H11_1334 at 23.278 kb on + strand, within Ac3H11_1334 at 23.278 kb on + strand, within Ac3H11_1334 at 23.278 kb on + strand, within Ac3H11_1334 at 23.332 kb on + strand, within Ac3H11_1334 at 23.332 kb on + strand, within Ac3H11_1334 at 23.332 kb on + strand, within Ac3H11_1334 at 23.332 kb on + strand, within Ac3H11_1334 at 23.333 kb on - strand, within Ac3H11_1334 at 23.333 kb on - strand, within Ac3H11_1334 at 23.359 kb on + strand, within Ac3H11_1334 at 23.360 kb on - strand, within Ac3H11_1334 at 23.484 kb on + strand at 23.502 kb on - strand at 23.714 kb on + strand, within Ac3H11_1335 at 23.714 kb on + strand, within Ac3H11_1335 at 23.714 kb on + strand, within Ac3H11_1335 at 23.714 kb on + strand, within Ac3H11_1335 at 23.714 kb on + strand, within Ac3H11_1335 at 23.714 kb on + strand, within Ac3H11_1335 at 23.715 kb on - strand, within Ac3H11_1335 at 23.764 kb on - strand at 23.809 kb on + strand at 23.810 kb on - strand at 23.810 kb on - strand at 23.810 kb on - strand at 23.830 kb on + strand at 23.831 kb on - strand at 23.831 kb on - strand at 23.848 kb on + strand at 23.848 kb on + strand at 23.849 kb on - strand at 23.849 kb on - strand at 23.849 kb on - strand at 23.935 kb on + strand at 23.935 kb on + strand at 23.935 kb on + strand at 23.935 kb on + strand at 23.935 kb on + strand at 23.936 kb on - strand at 23.936 kb on - strand at 23.936 kb on - strand at 23.936 kb on - strand at 23.936 kb on - strand at 23.936 kb on - strand at 23.936 kb on - strand at 24.034 kb on + strand, within Ac3H11_1336 at 24.035 kb on - strand, within Ac3H11_1336 at 24.035 kb on - strand, within Ac3H11_1336 at 24.035 kb on - strand, within Ac3H11_1336 at 24.169 kb on + strand, within Ac3H11_1336 at 24.169 kb on + strand, within Ac3H11_1336 at 24.169 kb on + strand, within Ac3H11_1336 at 24.169 kb on + strand, within Ac3H11_1336 at 24.170 kb on - strand, within Ac3H11_1336 at 24.170 kb on - strand, within Ac3H11_1336 at 24.170 kb on - strand, within Ac3H11_1336 at 24.170 kb on - strand, within Ac3H11_1336 at 24.170 kb on - strand, within Ac3H11_1336 at 24.211 kb on + strand, within Ac3H11_1336 at 24.211 kb on + strand, within Ac3H11_1336 at 24.430 kb on + strand, within Ac3H11_1336 at 24.430 kb on + strand, within Ac3H11_1336 at 24.430 kb on + strand, within Ac3H11_1336 at 24.430 kb on + strand, within Ac3H11_1336 at 24.430 kb on + strand, within Ac3H11_1336 at 24.430 kb on + strand, within Ac3H11_1336 at 24.430 kb on + strand, within Ac3H11_1336 at 24.430 kb on + strand, within Ac3H11_1336 at 24.430 kb on + strand, within Ac3H11_1336 at 24.430 kb on + strand, within Ac3H11_1336 at 24.431 kb on - strand, within Ac3H11_1336 at 24.431 kb on - strand, within Ac3H11_1336 at 24.431 kb on - strand, within Ac3H11_1336 at 24.514 kb on + strand, within Ac3H11_1336 at 24.514 kb on + strand, within Ac3H11_1336 at 24.514 kb on + strand, within Ac3H11_1336 at 24.514 kb on + strand, within Ac3H11_1336 at 24.515 kb on - strand, within Ac3H11_1336 at 24.515 kb on - strand, within Ac3H11_1336 at 24.515 kb on - strand, within Ac3H11_1336 at 24.515 kb on - strand, within Ac3H11_1336 at 24.515 kb on - strand, within Ac3H11_1336 at 24.515 kb on - strand, within Ac3H11_1336 at 25.272 kb on + strand, within Ac3H11_1336 at 25.272 kb on + strand, within Ac3H11_1336 at 25.273 kb on - strand, within Ac3H11_1336 at 25.273 kb on - strand, within Ac3H11_1336 at 25.570 kb on + strand at 25.570 kb on + strand at 25.570 kb on + strand at 25.570 kb on + strand at 25.571 kb on - strand at 25.571 kb on - strand at 25.645 kb on - strand at 26.199 kb on + strand at 26.199 kb on + strand at 26.199 kb on + strand at 26.199 kb on + strand at 26.200 kb on - strand at 26.200 kb on - strand at 26.200 kb on - strand at 26.200 kb on - strand at 26.200 kb on - strand at 26.304 kb on + strand at 26.370 kb on + strand at 26.370 kb on + strand at 26.371 kb on - strand at 26.468 kb on + strand at 26.477 kb on + strand at 26.477 kb on + strand at 26.477 kb on + strand at 26.477 kb on + strand at 26.477 kb on + strand at 26.477 kb on + strand at 26.477 kb on + strand at 26.477 kb on + strand at 26.478 kb on - strand at 26.478 kb on - strand at 26.520 kb on + strand at 26.520 kb on + strand at 26.521 kb on - strand at 26.521 kb on - strand at 26.527 kb on - strand at 26.538 kb on + strand at 26.538 kb on + strand at 26.538 kb on + strand at 26.538 kb on + strand at 26.539 kb on - strand at 26.700 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 22,779 + +1.1 22,780 - +0.8 22,780 - -0.0 22,780 - -0.4 22,894 + Ac3H11_1334 0.21 -1.0 22,895 - Ac3H11_1334 0.21 -0.2 23,017 + Ac3H11_1334 0.39 -1.0 23,017 + Ac3H11_1334 0.39 +1.5 23,018 - Ac3H11_1334 0.39 +0.6 23,018 - Ac3H11_1334 0.39 +0.6 23,018 - Ac3H11_1334 0.39 +0.3 23,018 - Ac3H11_1334 0.39 -0.6 23,018 - Ac3H11_1334 0.39 +0.7 23,222 - Ac3H11_1334 0.69 +0.0 23,222 - Ac3H11_1334 0.69 +0.7 23,222 - Ac3H11_1334 0.69 +0.1 23,222 - Ac3H11_1334 0.69 +0.1 23,222 - Ac3H11_1334 0.69 +0.7 23,254 + Ac3H11_1334 0.74 -0.1 23,254 + Ac3H11_1334 0.74 +0.6 23,254 + Ac3H11_1334 0.74 +1.0 23,278 + Ac3H11_1334 0.78 +2.5 23,278 + Ac3H11_1334 0.78 -1.7 23,278 + Ac3H11_1334 0.78 +0.2 23,278 + Ac3H11_1334 0.78 -0.4 23,332 + Ac3H11_1334 0.85 -0.3 23,332 + Ac3H11_1334 0.85 -0.2 23,332 + Ac3H11_1334 0.85 -0.8 23,332 + Ac3H11_1334 0.85 -1.3 23,333 - Ac3H11_1334 0.86 -1.7 23,333 - Ac3H11_1334 0.86 +0.3 23,359 + Ac3H11_1334 0.89 -0.3 23,360 - Ac3H11_1334 0.90 +0.2 23,484 + +1.1 23,502 - +0.7 23,714 + Ac3H11_1335 0.79 +1.1 23,714 + Ac3H11_1335 0.79 +1.6 23,714 + Ac3H11_1335 0.79 +0.2 23,714 + Ac3H11_1335 0.79 -0.3 23,714 + Ac3H11_1335 0.79 -0.3 23,714 + Ac3H11_1335 0.79 +1.0 23,715 - Ac3H11_1335 0.80 +0.4 23,764 - +0.3 23,809 + +0.9 23,810 - +0.4 23,810 - +0.8 23,810 - -0.9 23,830 + -0.2 23,831 - -0.1 23,831 - -0.8 23,848 + -0.1 23,848 + -0.1 23,849 - -0.2 23,849 - +0.5 23,849 - +0.6 23,935 + +0.8 23,935 + -0.8 23,935 + -0.3 23,935 + +0.9 23,935 + +0.0 23,936 - +0.0 23,936 - -0.7 23,936 - -0.2 23,936 - +0.0 23,936 - -0.2 23,936 - -1.0 23,936 - -0.2 24,034 + Ac3H11_1336 0.13 -0.4 24,035 - Ac3H11_1336 0.13 +0.4 24,035 - Ac3H11_1336 0.13 -0.3 24,035 - Ac3H11_1336 0.13 -0.5 24,169 + Ac3H11_1336 0.20 -0.5 24,169 + Ac3H11_1336 0.20 +0.3 24,169 + Ac3H11_1336 0.20 +1.1 24,169 + Ac3H11_1336 0.20 +1.1 24,170 - Ac3H11_1336 0.20 +0.3 24,170 - Ac3H11_1336 0.20 +0.5 24,170 - Ac3H11_1336 0.20 -1.3 24,170 - Ac3H11_1336 0.20 -0.2 24,170 - Ac3H11_1336 0.20 +0.1 24,211 + Ac3H11_1336 0.22 +0.0 24,211 + Ac3H11_1336 0.22 -0.9 24,430 + Ac3H11_1336 0.34 +0.4 24,430 + Ac3H11_1336 0.34 -0.2 24,430 + Ac3H11_1336 0.34 +0.1 24,430 + Ac3H11_1336 0.34 +0.4 24,430 + Ac3H11_1336 0.34 -0.4 24,430 + Ac3H11_1336 0.34 +0.1 24,430 + Ac3H11_1336 0.34 +0.6 24,430 + Ac3H11_1336 0.34 +0.2 24,430 + Ac3H11_1336 0.34 +0.9 24,430 + Ac3H11_1336 0.34 -0.0 24,431 - Ac3H11_1336 0.34 -1.2 24,431 - Ac3H11_1336 0.34 +0.3 24,431 - Ac3H11_1336 0.34 +1.5 24,514 + Ac3H11_1336 0.38 +0.6 24,514 + Ac3H11_1336 0.38 +0.8 24,514 + Ac3H11_1336 0.38 +0.9 24,514 + Ac3H11_1336 0.38 -0.2 24,515 - Ac3H11_1336 0.38 -0.2 24,515 - Ac3H11_1336 0.38 -0.2 24,515 - Ac3H11_1336 0.38 -1.0 24,515 - Ac3H11_1336 0.38 -0.2 24,515 - Ac3H11_1336 0.38 -0.1 24,515 - Ac3H11_1336 0.38 -0.5 25,272 + Ac3H11_1336 0.78 +1.0 25,272 + Ac3H11_1336 0.78 +0.4 25,273 - Ac3H11_1336 0.78 -0.0 25,273 - Ac3H11_1336 0.78 +0.6 25,570 + -0.5 25,570 + -0.6 25,570 + -0.1 25,570 + +0.3 25,571 - +1.3 25,571 - -1.1 25,645 - -0.4 26,199 + +1.0 26,199 + +1.1 26,199 + +0.3 26,199 + -0.5 26,200 - -0.2 26,200 - -0.8 26,200 - -0.3 26,200 - -0.2 26,200 - -0.1 26,304 + +0.0 26,370 + +0.2 26,370 + +0.7 26,371 - -0.2 26,468 + +0.1 26,477 + +0.2 26,477 + +0.5 26,477 + -0.4 26,477 + +0.1 26,477 + -1.1 26,477 + -0.9 26,477 + +2.4 26,477 + -0.1 26,478 - +0.5 26,478 - -0.4 26,520 + +0.1 26,520 + +0.5 26,521 - -0.2 26,521 - +1.0 26,527 - -0.1 26,538 + +0.6 26,538 + -0.3 26,538 + +0.1 26,538 + +0.2 26,539 - +0.2 26,700 - -0.7
Or see this region's nucleotide sequence