Experiment: L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS30630 and AZOBR_RS30635 are separated by 111 nucleotides AZOBR_RS30635 and AZOBR_RS30640 overlap by 38 nucleotides AZOBR_RS30640 and AZOBR_RS30645 are separated by 269 nucleotides
AZOBR_RS30630: AZOBR_RS30630 - transcriptional regulator, at 228,167 to 229,102
_RS30630
AZOBR_RS30635: AZOBR_RS30635 - phosphohydrolase, at 229,214 to 229,675
_RS30635
AZOBR_RS30640: AZOBR_RS30640 - hypothetical protein, at 229,638 to 230,405
_RS30640
AZOBR_RS30645: AZOBR_RS30645 - GTP-binding protein YchF, at 230,675 to 231,775
_RS30645
Position (kb) 229
230
231 Strain fitness (log2 ratio) -2
-1
0
1 at 229.162 kb on - strand at 229.162 kb on - strand at 229.503 kb on - strand, within AZOBR_RS30635 at 229.508 kb on + strand, within AZOBR_RS30635 at 229.508 kb on + strand, within AZOBR_RS30635 at 229.508 kb on + strand, within AZOBR_RS30635 at 229.509 kb on - strand, within AZOBR_RS30635 at 229.509 kb on - strand, within AZOBR_RS30635 at 229.717 kb on + strand, within AZOBR_RS30640 at 229.717 kb on + strand, within AZOBR_RS30640 at 229.718 kb on - strand, within AZOBR_RS30640 at 229.754 kb on - strand, within AZOBR_RS30640 at 229.936 kb on + strand, within AZOBR_RS30640 at 229.936 kb on + strand, within AZOBR_RS30640 at 229.937 kb on - strand, within AZOBR_RS30640 at 229.937 kb on - strand, within AZOBR_RS30640 at 229.937 kb on - strand, within AZOBR_RS30640 at 230.154 kb on + strand, within AZOBR_RS30640 at 230.474 kb on + strand at 230.475 kb on - strand at 230.559 kb on + strand at 230.583 kb on - strand at 230.583 kb on - strand at 230.787 kb on + strand, within AZOBR_RS30645
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (N) remove 229,162 - -0.3 229,162 - +0.1 229,503 - AZOBR_RS30635 0.63 +0.2 229,508 + AZOBR_RS30635 0.64 -1.4 229,508 + AZOBR_RS30635 0.64 -0.6 229,508 + AZOBR_RS30635 0.64 -0.1 229,509 - AZOBR_RS30635 0.64 -2.7 229,509 - AZOBR_RS30635 0.64 +1.1 229,717 + AZOBR_RS30640 0.10 +0.7 229,717 + AZOBR_RS30640 0.10 -0.3 229,718 - AZOBR_RS30640 0.10 +0.2 229,754 - AZOBR_RS30640 0.15 +0.1 229,936 + AZOBR_RS30640 0.39 -2.6 229,936 + AZOBR_RS30640 0.39 +0.2 229,937 - AZOBR_RS30640 0.39 +0.7 229,937 - AZOBR_RS30640 0.39 -0.0 229,937 - AZOBR_RS30640 0.39 +1.1 230,154 + AZOBR_RS30640 0.67 +0.4 230,474 + +0.4 230,475 - -0.5 230,559 + +1.5 230,583 - +0.6 230,583 - +0.3 230,787 + AZOBR_RS30645 0.10 -1.6
Or see this region's nucleotide sequence