Experiment: L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS19605 and AZOBR_RS19610 overlap by 14 nucleotides AZOBR_RS19610 and AZOBR_RS19615 are separated by 34 nucleotides AZOBR_RS19615 and AZOBR_RS19620 are separated by 41 nucleotides AZOBR_RS19620 and AZOBR_RS19625 are separated by 57 nucleotides
AZOBR_RS19605: AZOBR_RS19605 - TetR family transcriptional regulator, at 1,170,018 to 1,170,668
_RS19605
AZOBR_RS19610: AZOBR_RS19610 - activator of HSP90 ATPase, at 1,170,655 to 1,171,119
_RS19610
AZOBR_RS19615: AZOBR_RS19615 - glyoxalase/bleomycin resistance protein/dioxygenase, at 1,171,154 to 1,171,588
_RS19615
AZOBR_RS19620: AZOBR_RS19620 - hypothetical protein, at 1,171,630 to 1,171,995
_RS19620
AZOBR_RS19625: AZOBR_RS19625 - hypothetical protein, at 1,172,053 to 1,172,871
_RS19625
Position (kb) 1171
1172 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1171.000 kb on + strand, within AZOBR_RS19610 at 1171.000 kb on + strand, within AZOBR_RS19610 at 1171.001 kb on - strand, within AZOBR_RS19610 at 1171.001 kb on - strand, within AZOBR_RS19610 at 1171.169 kb on + strand at 1171.169 kb on + strand at 1171.169 kb on + strand at 1171.169 kb on + strand at 1171.170 kb on - strand at 1171.170 kb on - strand at 1171.212 kb on - strand, within AZOBR_RS19615 at 1171.242 kb on - strand, within AZOBR_RS19615 at 1171.242 kb on - strand, within AZOBR_RS19615 at 1171.242 kb on - strand, within AZOBR_RS19615 at 1171.370 kb on + strand, within AZOBR_RS19615 at 1171.370 kb on + strand, within AZOBR_RS19615 at 1171.370 kb on + strand, within AZOBR_RS19615 at 1171.370 kb on + strand, within AZOBR_RS19615 at 1171.370 kb on + strand, within AZOBR_RS19615 at 1171.370 kb on + strand, within AZOBR_RS19615 at 1171.370 kb on + strand, within AZOBR_RS19615 at 1171.371 kb on - strand, within AZOBR_RS19615 at 1171.371 kb on - strand, within AZOBR_RS19615 at 1171.371 kb on - strand, within AZOBR_RS19615 at 1171.371 kb on - strand, within AZOBR_RS19615 at 1171.371 kb on - strand, within AZOBR_RS19615 at 1171.636 kb on + strand at 1171.636 kb on + strand at 1171.637 kb on - strand at 1171.637 kb on - strand at 1172.309 kb on + strand, within AZOBR_RS19625 at 1172.310 kb on - strand, within AZOBR_RS19625 at 1172.310 kb on - strand, within AZOBR_RS19625 at 1172.312 kb on + strand, within AZOBR_RS19625 at 1172.312 kb on + strand, within AZOBR_RS19625 at 1172.312 kb on + strand, within AZOBR_RS19625 at 1172.312 kb on + strand, within AZOBR_RS19625 at 1172.313 kb on - strand, within AZOBR_RS19625 at 1172.313 kb on - strand, within AZOBR_RS19625 at 1172.313 kb on - strand, within AZOBR_RS19625 at 1172.313 kb on - strand, within AZOBR_RS19625 at 1172.313 kb on - strand, within AZOBR_RS19625 at 1172.369 kb on + strand, within AZOBR_RS19625 at 1172.369 kb on + strand, within AZOBR_RS19625 at 1172.372 kb on + strand, within AZOBR_RS19625 at 1172.454 kb on - strand, within AZOBR_RS19625 at 1172.454 kb on - strand, within AZOBR_RS19625 at 1172.579 kb on + strand, within AZOBR_RS19625 at 1172.580 kb on - strand, within AZOBR_RS19625 at 1172.660 kb on + strand, within AZOBR_RS19625 at 1172.661 kb on - strand, within AZOBR_RS19625 at 1172.920 kb on + strand at 1172.920 kb on + strand at 1172.921 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (N) remove 1,171,000 + AZOBR_RS19610 0.74 +0.8 1,171,000 + AZOBR_RS19610 0.74 -0.9 1,171,001 - AZOBR_RS19610 0.74 +0.7 1,171,001 - AZOBR_RS19610 0.74 -0.5 1,171,169 + -0.0 1,171,169 + +1.2 1,171,169 + +0.6 1,171,169 + +0.8 1,171,170 - +0.5 1,171,170 - -0.7 1,171,212 - AZOBR_RS19615 0.13 -1.1 1,171,242 - AZOBR_RS19615 0.20 -2.2 1,171,242 - AZOBR_RS19615 0.20 +0.4 1,171,242 - AZOBR_RS19615 0.20 +0.3 1,171,370 + AZOBR_RS19615 0.50 +0.2 1,171,370 + AZOBR_RS19615 0.50 +1.4 1,171,370 + AZOBR_RS19615 0.50 -0.1 1,171,370 + AZOBR_RS19615 0.50 +0.0 1,171,370 + AZOBR_RS19615 0.50 +0.9 1,171,370 + AZOBR_RS19615 0.50 -2.1 1,171,370 + AZOBR_RS19615 0.50 -2.2 1,171,371 - AZOBR_RS19615 0.50 +0.1 1,171,371 - AZOBR_RS19615 0.50 -0.1 1,171,371 - AZOBR_RS19615 0.50 -3.3 1,171,371 - AZOBR_RS19615 0.50 +0.0 1,171,371 - AZOBR_RS19615 0.50 -2.3 1,171,636 + +0.3 1,171,636 + -0.3 1,171,637 - -1.8 1,171,637 - -1.1 1,172,309 + AZOBR_RS19625 0.31 +2.8 1,172,310 - AZOBR_RS19625 0.31 +0.7 1,172,310 - AZOBR_RS19625 0.31 +0.3 1,172,312 + AZOBR_RS19625 0.32 -0.4 1,172,312 + AZOBR_RS19625 0.32 +1.4 1,172,312 + AZOBR_RS19625 0.32 -0.1 1,172,312 + AZOBR_RS19625 0.32 +1.1 1,172,313 - AZOBR_RS19625 0.32 -0.0 1,172,313 - AZOBR_RS19625 0.32 +1.3 1,172,313 - AZOBR_RS19625 0.32 +0.0 1,172,313 - AZOBR_RS19625 0.32 -2.0 1,172,313 - AZOBR_RS19625 0.32 +0.2 1,172,369 + AZOBR_RS19625 0.39 +0.9 1,172,369 + AZOBR_RS19625 0.39 -0.2 1,172,372 + AZOBR_RS19625 0.39 -2.7 1,172,454 - AZOBR_RS19625 0.49 +1.4 1,172,454 - AZOBR_RS19625 0.49 -0.3 1,172,579 + AZOBR_RS19625 0.64 -1.6 1,172,580 - AZOBR_RS19625 0.64 +0.6 1,172,660 + AZOBR_RS19625 0.74 +0.6 1,172,661 - AZOBR_RS19625 0.74 +1.2 1,172,920 + +0.5 1,172,920 + -1.8 1,172,921 - -1.4
Or see this region's nucleotide sequence