Experiment: L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS17975 and AZOBR_RS17980 are separated by 262 nucleotides
AZOBR_RS17975: AZOBR_RS17975 - hypothetical protein, at 792,922 to 793,413
_RS17975
AZOBR_RS17980: AZOBR_RS17980 - LysR family transcriptional regulator, at 793,676 to 794,614
_RS17980
Position (kb) 792
793
794 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 791.960 kb on - strand at 791.965 kb on - strand at 792.075 kb on + strand at 792.076 kb on - strand at 792.076 kb on - strand at 792.076 kb on - strand at 792.076 kb on - strand at 792.093 kb on + strand at 792.094 kb on - strand at 792.094 kb on - strand at 792.094 kb on - strand at 792.094 kb on - strand at 792.094 kb on - strand at 792.127 kb on - strand at 792.341 kb on + strand at 792.342 kb on - strand at 792.342 kb on - strand at 792.404 kb on + strand at 792.502 kb on + strand at 792.503 kb on - strand at 792.518 kb on + strand at 792.519 kb on - strand at 792.572 kb on + strand at 792.612 kb on - strand at 792.860 kb on + strand at 792.860 kb on + strand at 792.860 kb on + strand at 792.860 kb on + strand at 792.860 kb on + strand at 792.860 kb on + strand at 792.860 kb on + strand at 792.860 kb on + strand at 792.860 kb on + strand at 792.860 kb on + strand at 792.860 kb on + strand at 792.861 kb on - strand at 792.861 kb on - strand at 792.861 kb on - strand at 792.861 kb on - strand at 792.861 kb on - strand at 792.861 kb on - strand at 792.861 kb on - strand at 792.861 kb on - strand at 792.982 kb on - strand, within AZOBR_RS17975 at 793.063 kb on + strand, within AZOBR_RS17975 at 793.063 kb on + strand, within AZOBR_RS17975 at 793.063 kb on + strand, within AZOBR_RS17975 at 793.063 kb on + strand, within AZOBR_RS17975 at 793.063 kb on + strand, within AZOBR_RS17975 at 793.064 kb on - strand, within AZOBR_RS17975 at 793.064 kb on - strand, within AZOBR_RS17975 at 793.064 kb on - strand, within AZOBR_RS17975 at 793.064 kb on - strand, within AZOBR_RS17975 at 793.064 kb on - strand, within AZOBR_RS17975 at 793.064 kb on - strand, within AZOBR_RS17975 at 793.282 kb on + strand, within AZOBR_RS17975 at 793.282 kb on + strand, within AZOBR_RS17975 at 793.283 kb on - strand, within AZOBR_RS17975 at 793.283 kb on - strand, within AZOBR_RS17975 at 793.283 kb on - strand, within AZOBR_RS17975 at 793.390 kb on + strand at 793.390 kb on + strand at 793.391 kb on - strand at 793.400 kb on + strand at 793.400 kb on + strand at 793.400 kb on + strand at 793.401 kb on - strand at 793.401 kb on - strand at 793.491 kb on + strand at 793.492 kb on - strand at 793.498 kb on + strand at 793.498 kb on + strand at 793.551 kb on - strand at 793.560 kb on - strand at 793.598 kb on + strand at 793.598 kb on + strand at 793.599 kb on - strand at 793.604 kb on - strand at 793.642 kb on + strand at 793.642 kb on + strand at 793.643 kb on - strand at 793.643 kb on - strand at 793.650 kb on - strand at 793.698 kb on + strand at 793.698 kb on + strand at 793.699 kb on - strand at 794.049 kb on + strand, within AZOBR_RS17980 at 794.050 kb on - strand, within AZOBR_RS17980 at 794.289 kb on + strand, within AZOBR_RS17980
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (N) remove 791,960 - +1.7 791,965 - -0.9 792,075 + +0.2 792,076 - -0.1 792,076 - -1.3 792,076 - -0.7 792,076 - +1.0 792,093 + -2.3 792,094 - +0.1 792,094 - -0.3 792,094 - -0.8 792,094 - +0.5 792,094 - -1.1 792,127 - -2.0 792,341 + -0.7 792,342 - -2.4 792,342 - +0.1 792,404 + -0.1 792,502 + -0.3 792,503 - -1.5 792,518 + -0.9 792,519 - -0.3 792,572 + +0.3 792,612 - +0.6 792,860 + -0.3 792,860 + +0.2 792,860 + -0.7 792,860 + -1.1 792,860 + -0.6 792,860 + -0.6 792,860 + -0.3 792,860 + +0.0 792,860 + +0.8 792,860 + -0.6 792,860 + -0.1 792,861 - -0.6 792,861 - -2.2 792,861 - +0.2 792,861 - -2.9 792,861 - -0.3 792,861 - -0.3 792,861 - -0.3 792,861 - +0.2 792,982 - AZOBR_RS17975 0.12 -1.1 793,063 + AZOBR_RS17975 0.29 -0.6 793,063 + AZOBR_RS17975 0.29 -0.2 793,063 + AZOBR_RS17975 0.29 -1.1 793,063 + AZOBR_RS17975 0.29 -0.5 793,063 + AZOBR_RS17975 0.29 +0.0 793,064 - AZOBR_RS17975 0.29 -2.5 793,064 - AZOBR_RS17975 0.29 -1.6 793,064 - AZOBR_RS17975 0.29 -0.5 793,064 - AZOBR_RS17975 0.29 -0.5 793,064 - AZOBR_RS17975 0.29 -1.5 793,064 - AZOBR_RS17975 0.29 +2.6 793,282 + AZOBR_RS17975 0.73 -0.4 793,282 + AZOBR_RS17975 0.73 -1.5 793,283 - AZOBR_RS17975 0.73 -0.3 793,283 - AZOBR_RS17975 0.73 -2.1 793,283 - AZOBR_RS17975 0.73 -0.3 793,390 + +0.4 793,390 + +1.1 793,391 - +3.9 793,400 + +0.7 793,400 + +0.6 793,400 + +0.7 793,401 - -2.2 793,401 - -0.1 793,491 + +1.8 793,492 - +0.5 793,498 + -0.6 793,498 + +0.2 793,551 - -0.6 793,560 - +0.8 793,598 + -0.1 793,598 + -0.3 793,599 - +0.3 793,604 - +0.1 793,642 + +0.9 793,642 + +0.4 793,643 - -0.1 793,643 - -0.9 793,650 - -0.2 793,698 + -2.2 793,698 + +1.4 793,699 - +0.1 794,049 + AZOBR_RS17980 0.40 -1.3 794,050 - AZOBR_RS17980 0.40 +0.1 794,289 + AZOBR_RS17980 0.65 +0.3
Or see this region's nucleotide sequence