Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS02320

Experiment: L-Threonine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS02315 and AZOBR_RS02320 are separated by 168 nucleotidesAZOBR_RS02320 and AZOBR_RS02325 are separated by 88 nucleotides AZOBR_RS02315: AZOBR_RS02315 - ATPase AAA, at 477,514 to 479,046 _RS02315 AZOBR_RS02320: AZOBR_RS02320 - amidase, at 479,215 to 479,961 _RS02320 AZOBR_RS02325: AZOBR_RS02325 - ABC transporter substrate-binding protein, at 480,050 to 481,561 _RS02325 Position (kb) 479 480Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 479.083 kb on - strandat 479.254 kb on + strandat 479.254 kb on + strandat 479.255 kb on - strandat 479.488 kb on + strand, within AZOBR_RS02320at 479.488 kb on + strand, within AZOBR_RS02320at 479.488 kb on + strand, within AZOBR_RS02320at 479.488 kb on + strand, within AZOBR_RS02320at 479.489 kb on - strand, within AZOBR_RS02320at 479.489 kb on - strand, within AZOBR_RS02320at 479.489 kb on - strand, within AZOBR_RS02320at 479.578 kb on + strand, within AZOBR_RS02320at 479.579 kb on - strand, within AZOBR_RS02320at 479.587 kb on + strand, within AZOBR_RS02320at 479.746 kb on + strand, within AZOBR_RS02320at 479.746 kb on + strand, within AZOBR_RS02320at 479.746 kb on + strand, within AZOBR_RS02320at 479.747 kb on - strand, within AZOBR_RS02320at 479.747 kb on - strand, within AZOBR_RS02320at 479.747 kb on - strand, within AZOBR_RS02320at 479.812 kb on + strand, within AZOBR_RS02320at 479.813 kb on - strand, within AZOBR_RS02320at 479.935 kb on + strandat 479.936 kb on - strandat 480.242 kb on + strand, within AZOBR_RS02325at 480.242 kb on + strand, within AZOBR_RS02325at 480.242 kb on + strand, within AZOBR_RS02325at 480.242 kb on + strand, within AZOBR_RS02325at 480.243 kb on - strand, within AZOBR_RS02325at 480.243 kb on - strand, within AZOBR_RS02325at 480.254 kb on + strand, within AZOBR_RS02325at 480.254 kb on + strand, within AZOBR_RS02325at 480.341 kb on + strand, within AZOBR_RS02325at 480.341 kb on + strand, within AZOBR_RS02325at 480.341 kb on + strand, within AZOBR_RS02325at 480.342 kb on - strand, within AZOBR_RS02325at 480.461 kb on + strand, within AZOBR_RS02325at 480.462 kb on - strand, within AZOBR_RS02325at 480.462 kb on - strand, within AZOBR_RS02325at 480.686 kb on + strand, within AZOBR_RS02325at 480.686 kb on + strand, within AZOBR_RS02325at 480.686 kb on + strand, within AZOBR_RS02325at 480.803 kb on + strand, within AZOBR_RS02325at 480.804 kb on - strand, within AZOBR_RS02325at 480.804 kb on - strand, within AZOBR_RS02325

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (N)
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479,083 - -2.4
479,254 + -0.9
479,254 + +0.3
479,255 - +0.2
479,488 + AZOBR_RS02320 0.37 +0.4
479,488 + AZOBR_RS02320 0.37 -1.6
479,488 + AZOBR_RS02320 0.37 -2.4
479,488 + AZOBR_RS02320 0.37 -0.9
479,489 - AZOBR_RS02320 0.37 -0.0
479,489 - AZOBR_RS02320 0.37 +1.0
479,489 - AZOBR_RS02320 0.37 +0.5
479,578 + AZOBR_RS02320 0.49 -1.7
479,579 - AZOBR_RS02320 0.49 +1.5
479,587 + AZOBR_RS02320 0.50 +2.0
479,746 + AZOBR_RS02320 0.71 -0.2
479,746 + AZOBR_RS02320 0.71 +1.3
479,746 + AZOBR_RS02320 0.71 +0.3
479,747 - AZOBR_RS02320 0.71 +1.0
479,747 - AZOBR_RS02320 0.71 -0.5
479,747 - AZOBR_RS02320 0.71 +0.2
479,812 + AZOBR_RS02320 0.80 -1.2
479,813 - AZOBR_RS02320 0.80 +0.3
479,935 + -2.9
479,936 - -1.0
480,242 + AZOBR_RS02325 0.13 +0.7
480,242 + AZOBR_RS02325 0.13 -0.1
480,242 + AZOBR_RS02325 0.13 -1.2
480,242 + AZOBR_RS02325 0.13 -1.7
480,243 - AZOBR_RS02325 0.13 -2.9
480,243 - AZOBR_RS02325 0.13 +0.1
480,254 + AZOBR_RS02325 0.13 +0.8
480,254 + AZOBR_RS02325 0.13 -1.0
480,341 + AZOBR_RS02325 0.19 -0.8
480,341 + AZOBR_RS02325 0.19 -0.7
480,341 + AZOBR_RS02325 0.19 +0.0
480,342 - AZOBR_RS02325 0.19 +0.2
480,461 + AZOBR_RS02325 0.27 +0.7
480,462 - AZOBR_RS02325 0.27 -0.9
480,462 - AZOBR_RS02325 0.27 +1.0
480,686 + AZOBR_RS02325 0.42 -0.2
480,686 + AZOBR_RS02325 0.42 -0.8
480,686 + AZOBR_RS02325 0.42 -0.1
480,803 + AZOBR_RS02325 0.50 +0.4
480,804 - AZOBR_RS02325 0.50 -1.0
480,804 - AZOBR_RS02325 0.50 +0.6

Or see this region's nucleotide sequence