Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS21010

Experiment: A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS21005 and ABZR86_RS21010 are separated by 172 nucleotidesABZR86_RS21010 and ABZR86_RS21015 are separated by 4 nucleotidesABZR86_RS21015 and ABZR86_RS21020 are separated by 118 nucleotides ABZR86_RS21005: ABZR86_RS21005 - omptin family outer membrane protease, at 173,586 to 174,575 _RS21005 ABZR86_RS21010: ABZR86_RS21010 - hypothetical protein, at 174,748 to 175,326 _RS21010 ABZR86_RS21015: ABZR86_RS21015 - SDR family oxidoreductase, at 175,331 to 176,134 _RS21015 ABZR86_RS21020: ABZR86_RS21020 - ATP-binding protein, at 176,253 to 177,569 _RS21020 Position (kb) 174 175 176Strain fitness (log2 ratio) -1 0 1 2at 173.751 kb on + strand, within ABZR86_RS21005at 173.751 kb on + strand, within ABZR86_RS21005at 173.751 kb on + strand, within ABZR86_RS21005at 173.751 kb on + strand, within ABZR86_RS21005at 173.752 kb on - strand, within ABZR86_RS21005at 173.752 kb on - strand, within ABZR86_RS21005at 173.752 kb on - strand, within ABZR86_RS21005at 173.757 kb on + strand, within ABZR86_RS21005at 173.757 kb on + strand, within ABZR86_RS21005at 173.839 kb on - strand, within ABZR86_RS21005at 173.913 kb on + strand, within ABZR86_RS21005at 174.105 kb on + strand, within ABZR86_RS21005at 174.105 kb on + strand, within ABZR86_RS21005at 174.105 kb on + strand, within ABZR86_RS21005at 174.105 kb on + strand, within ABZR86_RS21005at 174.106 kb on - strand, within ABZR86_RS21005at 174.106 kb on - strand, within ABZR86_RS21005at 174.106 kb on - strand, within ABZR86_RS21005at 174.106 kb on - strand, within ABZR86_RS21005at 174.106 kb on - strand, within ABZR86_RS21005at 174.106 kb on - strand, within ABZR86_RS21005at 174.107 kb on + strand, within ABZR86_RS21005at 174.107 kb on + strand, within ABZR86_RS21005at 174.107 kb on + strand, within ABZR86_RS21005at 174.107 kb on + strand, within ABZR86_RS21005at 174.108 kb on - strand, within ABZR86_RS21005at 174.108 kb on - strand, within ABZR86_RS21005at 174.108 kb on - strand, within ABZR86_RS21005at 174.111 kb on + strand, within ABZR86_RS21005at 174.111 kb on + strand, within ABZR86_RS21005at 174.112 kb on - strand, within ABZR86_RS21005at 174.112 kb on - strand, within ABZR86_RS21005at 174.182 kb on + strand, within ABZR86_RS21005at 174.182 kb on + strand, within ABZR86_RS21005at 174.183 kb on - strand, within ABZR86_RS21005at 174.200 kb on + strand, within ABZR86_RS21005at 174.200 kb on + strand, within ABZR86_RS21005at 174.200 kb on + strand, within ABZR86_RS21005at 174.200 kb on + strand, within ABZR86_RS21005at 174.201 kb on - strand, within ABZR86_RS21005at 174.201 kb on - strand, within ABZR86_RS21005at 174.201 kb on - strand, within ABZR86_RS21005at 174.204 kb on + strand, within ABZR86_RS21005at 174.205 kb on - strand, within ABZR86_RS21005at 174.205 kb on - strand, within ABZR86_RS21005at 174.228 kb on + strand, within ABZR86_RS21005at 174.250 kb on - strand, within ABZR86_RS21005at 174.273 kb on + strand, within ABZR86_RS21005at 174.273 kb on + strand, within ABZR86_RS21005at 174.273 kb on + strand, within ABZR86_RS21005at 174.274 kb on - strand, within ABZR86_RS21005at 174.274 kb on - strand, within ABZR86_RS21005at 174.274 kb on - strand, within ABZR86_RS21005at 174.399 kb on + strand, within ABZR86_RS21005at 174.400 kb on - strand, within ABZR86_RS21005at 174.400 kb on - strand, within ABZR86_RS21005at 174.450 kb on + strand, within ABZR86_RS21005at 174.451 kb on - strand, within ABZR86_RS21005at 174.603 kb on + strandat 174.776 kb on - strandat 174.776 kb on - strandat 174.835 kb on + strand, within ABZR86_RS21010at 174.836 kb on - strand, within ABZR86_RS21010at 174.997 kb on + strand, within ABZR86_RS21010at 174.997 kb on + strand, within ABZR86_RS21010at 175.142 kb on + strand, within ABZR86_RS21010at 175.142 kb on + strand, within ABZR86_RS21010at 175.143 kb on - strand, within ABZR86_RS21010at 175.143 kb on - strand, within ABZR86_RS21010at 175.176 kb on + strand, within ABZR86_RS21010at 175.279 kb on + strandat 175.351 kb on - strandat 175.351 kb on - strandat 175.653 kb on + strand, within ABZR86_RS21015at 175.653 kb on + strand, within ABZR86_RS21015at 175.654 kb on - strand, within ABZR86_RS21015at 175.671 kb on + strand, within ABZR86_RS21015at 175.671 kb on + strand, within ABZR86_RS21015at 175.717 kb on + strand, within ABZR86_RS21015at 175.767 kb on + strand, within ABZR86_RS21015at 175.767 kb on + strand, within ABZR86_RS21015at 175.767 kb on + strand, within ABZR86_RS21015at 175.768 kb on - strand, within ABZR86_RS21015at 175.955 kb on + strand, within ABZR86_RS21015at 175.956 kb on - strand, within ABZR86_RS21015at 175.956 kb on - strand, within ABZR86_RS21015at 175.956 kb on - strand, within ABZR86_RS21015at 176.071 kb on - strandat 176.183 kb on + strandat 176.183 kb on + strandat 176.183 kb on + strandat 176.183 kb on + strandat 176.183 kb on + strandat 176.183 kb on + strandat 176.183 kb on + strandat 176.183 kb on + strandat 176.183 kb on + strandat 176.183 kb on + strandat 176.184 kb on - strandat 176.184 kb on - strandat 176.184 kb on - strandat 176.184 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.01 mg/ml
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173,751 + ABZR86_RS21005 0.17 +1.6
173,751 + ABZR86_RS21005 0.17 +0.3
173,751 + ABZR86_RS21005 0.17 +0.1
173,751 + ABZR86_RS21005 0.17 -0.5
173,752 - ABZR86_RS21005 0.17 -0.2
173,752 - ABZR86_RS21005 0.17 +0.9
173,752 - ABZR86_RS21005 0.17 +0.9
173,757 + ABZR86_RS21005 0.17 -0.6
173,757 + ABZR86_RS21005 0.17 -1.5
173,839 - ABZR86_RS21005 0.26 -0.1
173,913 + ABZR86_RS21005 0.33 -0.1
174,105 + ABZR86_RS21005 0.52 -0.9
174,105 + ABZR86_RS21005 0.52 +0.1
174,105 + ABZR86_RS21005 0.52 +0.4
174,105 + ABZR86_RS21005 0.52 -0.1
174,106 - ABZR86_RS21005 0.53 +0.3
174,106 - ABZR86_RS21005 0.53 -0.5
174,106 - ABZR86_RS21005 0.53 +0.2
174,106 - ABZR86_RS21005 0.53 -0.1
174,106 - ABZR86_RS21005 0.53 +0.4
174,106 - ABZR86_RS21005 0.53 +0.0
174,107 + ABZR86_RS21005 0.53 -0.5
174,107 + ABZR86_RS21005 0.53 -1.5
174,107 + ABZR86_RS21005 0.53 +0.4
174,107 + ABZR86_RS21005 0.53 +0.1
174,108 - ABZR86_RS21005 0.53 +0.0
174,108 - ABZR86_RS21005 0.53 -1.0
174,108 - ABZR86_RS21005 0.53 +0.5
174,111 + ABZR86_RS21005 0.53 -0.3
174,111 + ABZR86_RS21005 0.53 -0.5
174,112 - ABZR86_RS21005 0.53 +0.1
174,112 - ABZR86_RS21005 0.53 +0.3
174,182 + ABZR86_RS21005 0.60 +0.4
174,182 + ABZR86_RS21005 0.60 +0.2
174,183 - ABZR86_RS21005 0.60 -0.1
174,200 + ABZR86_RS21005 0.62 +1.0
174,200 + ABZR86_RS21005 0.62 -0.5
174,200 + ABZR86_RS21005 0.62 -0.2
174,200 + ABZR86_RS21005 0.62 -1.0
174,201 - ABZR86_RS21005 0.62 +0.1
174,201 - ABZR86_RS21005 0.62 +0.5
174,201 - ABZR86_RS21005 0.62 -0.5
174,204 + ABZR86_RS21005 0.62 -0.1
174,205 - ABZR86_RS21005 0.63 +0.0
174,205 - ABZR86_RS21005 0.63 -0.1
174,228 + ABZR86_RS21005 0.65 +1.0
174,250 - ABZR86_RS21005 0.67 +0.3
174,273 + ABZR86_RS21005 0.69 -0.2
174,273 + ABZR86_RS21005 0.69 +0.0
174,273 + ABZR86_RS21005 0.69 -0.1
174,274 - ABZR86_RS21005 0.69 -0.3
174,274 - ABZR86_RS21005 0.69 +0.4
174,274 - ABZR86_RS21005 0.69 -0.5
174,399 + ABZR86_RS21005 0.82 +0.4
174,400 - ABZR86_RS21005 0.82 -0.0
174,400 - ABZR86_RS21005 0.82 -0.3
174,450 + ABZR86_RS21005 0.87 +0.7
174,451 - ABZR86_RS21005 0.87 -0.3
174,603 + +0.3
174,776 - -0.3
174,776 - -0.3
174,835 + ABZR86_RS21010 0.15 +0.4
174,836 - ABZR86_RS21010 0.15 +0.4
174,997 + ABZR86_RS21010 0.43 -0.2
174,997 + ABZR86_RS21010 0.43 +0.1
175,142 + ABZR86_RS21010 0.68 -0.5
175,142 + ABZR86_RS21010 0.68 -0.4
175,143 - ABZR86_RS21010 0.68 +0.3
175,143 - ABZR86_RS21010 0.68 +1.4
175,176 + ABZR86_RS21010 0.74 +0.3
175,279 + +0.5
175,351 - +0.2
175,351 - -0.3
175,653 + ABZR86_RS21015 0.40 +1.0
175,653 + ABZR86_RS21015 0.40 +0.2
175,654 - ABZR86_RS21015 0.40 +0.4
175,671 + ABZR86_RS21015 0.42 -0.3
175,671 + ABZR86_RS21015 0.42 +0.0
175,717 + ABZR86_RS21015 0.48 -0.0
175,767 + ABZR86_RS21015 0.54 -0.6
175,767 + ABZR86_RS21015 0.54 +0.7
175,767 + ABZR86_RS21015 0.54 -0.3
175,768 - ABZR86_RS21015 0.54 +0.0
175,955 + ABZR86_RS21015 0.78 +0.6
175,956 - ABZR86_RS21015 0.78 -0.1
175,956 - ABZR86_RS21015 0.78 +0.0
175,956 - ABZR86_RS21015 0.78 -0.6
176,071 - -0.2
176,183 + +0.4
176,183 + +0.7
176,183 + +1.0
176,183 + +2.0
176,183 + -1.0
176,183 + +0.1
176,183 + +0.4
176,183 + -0.2
176,183 + +1.2
176,183 + +0.0
176,184 - +0.1
176,184 - -0.4
176,184 - +0.2
176,184 - +0.0

Or see this region's nucleotide sequence