Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS19805

Experiment: A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS19795 and ABZR86_RS19800 are separated by 37 nucleotidesABZR86_RS19800 and ABZR86_RS19805 are separated by 5 nucleotidesABZR86_RS19805 and ABZR86_RS19810 are separated by 154 nucleotidesABZR86_RS19810 and ABZR86_RS19815 are separated by 158 nucleotides ABZR86_RS19795: ABZR86_RS19795 - PTS sugar transporter subunit IIA, at 456,980 to 457,372 _RS19795 ABZR86_RS19800: ABZR86_RS19800 - RNase adapter RapZ, at 457,410 to 458,312 _RS19800 ABZR86_RS19805: ABZR86_RS19805 - HPr(Ser) kinase/phosphatase, at 458,318 to 459,268 _RS19805 ABZR86_RS19810: ABZR86_RS19810 - ribosome-associated translation inhibitor RaiA, at 459,423 to 459,749 _RS19810 ABZR86_RS19815: ABZR86_RS19815 - RNA polymerase factor sigma-54, at 459,908 to 461,368 _RS19815 Position (kb) 458 459 460Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 457.400 kb on + strandat 457.400 kb on + strandat 457.400 kb on + strandat 457.401 kb on - strandat 457.401 kb on - strandat 457.401 kb on - strandat 457.401 kb on - strandat 457.401 kb on - strandat 457.401 kb on - strandat 457.486 kb on + strandat 457.486 kb on + strandat 457.486 kb on + strandat 457.487 kb on - strandat 457.487 kb on - strandat 457.487 kb on - strandat 457.534 kb on + strand, within ABZR86_RS19800at 457.534 kb on + strand, within ABZR86_RS19800at 457.534 kb on + strand, within ABZR86_RS19800at 457.534 kb on + strand, within ABZR86_RS19800at 457.534 kb on + strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.589 kb on + strand, within ABZR86_RS19800at 457.590 kb on - strand, within ABZR86_RS19800at 457.600 kb on + strand, within ABZR86_RS19800at 457.600 kb on + strand, within ABZR86_RS19800at 457.600 kb on + strand, within ABZR86_RS19800at 457.601 kb on - strand, within ABZR86_RS19800at 457.795 kb on + strand, within ABZR86_RS19800at 457.796 kb on - strand, within ABZR86_RS19800at 457.796 kb on - strand, within ABZR86_RS19800at 458.188 kb on + strand, within ABZR86_RS19800at 458.188 kb on + strand, within ABZR86_RS19800at 458.188 kb on + strand, within ABZR86_RS19800at 458.188 kb on + strand, within ABZR86_RS19800at 458.401 kb on + strandat 458.401 kb on + strandat 458.401 kb on + strandat 458.401 kb on + strandat 458.401 kb on + strandat 458.401 kb on + strandat 458.401 kb on + strandat 458.401 kb on + strandat 458.401 kb on + strandat 458.401 kb on + strandat 458.401 kb on + strandat 458.401 kb on + strandat 458.401 kb on + strandat 458.401 kb on + strandat 458.401 kb on + strandat 458.402 kb on - strandat 458.402 kb on - strandat 458.402 kb on - strandat 458.402 kb on - strandat 458.402 kb on - strandat 458.583 kb on + strand, within ABZR86_RS19805at 458.583 kb on + strand, within ABZR86_RS19805at 458.584 kb on + strand, within ABZR86_RS19805at 458.883 kb on + strand, within ABZR86_RS19805at 458.883 kb on + strand, within ABZR86_RS19805at 458.883 kb on + strand, within ABZR86_RS19805at 458.883 kb on + strand, within ABZR86_RS19805at 458.884 kb on - strand, within ABZR86_RS19805at 458.884 kb on - strand, within ABZR86_RS19805at 458.939 kb on - strand, within ABZR86_RS19805at 458.939 kb on - strand, within ABZR86_RS19805at 458.939 kb on - strand, within ABZR86_RS19805at 459.016 kb on - strand, within ABZR86_RS19805at 459.072 kb on + strand, within ABZR86_RS19805at 459.073 kb on - strand, within ABZR86_RS19805at 459.130 kb on - strand, within ABZR86_RS19805at 459.240 kb on + strandat 459.240 kb on + strandat 459.241 kb on - strandat 459.241 kb on - strandat 459.241 kb on - strandat 459.241 kb on - strandat 459.257 kb on - strandat 459.357 kb on + strandat 459.357 kb on + strandat 459.358 kb on - strandat 459.431 kb on - strandat 459.471 kb on + strand, within ABZR86_RS19810at 459.471 kb on + strand, within ABZR86_RS19810at 459.471 kb on + strand, within ABZR86_RS19810at 459.471 kb on + strand, within ABZR86_RS19810at 459.471 kb on + strand, within ABZR86_RS19810at 459.472 kb on - strand, within ABZR86_RS19810at 459.535 kb on + strand, within ABZR86_RS19810at 459.535 kb on + strand, within ABZR86_RS19810at 459.535 kb on + strand, within ABZR86_RS19810at 459.535 kb on + strand, within ABZR86_RS19810at 459.535 kb on + strand, within ABZR86_RS19810at 459.535 kb on + strand, within ABZR86_RS19810at 459.535 kb on + strand, within ABZR86_RS19810at 459.535 kb on + strand, within ABZR86_RS19810at 459.535 kb on + strand, within ABZR86_RS19810at 459.535 kb on + strand, within ABZR86_RS19810at 459.536 kb on - strand, within ABZR86_RS19810at 459.536 kb on - strand, within ABZR86_RS19810at 459.536 kb on - strand, within ABZR86_RS19810at 459.536 kb on - strand, within ABZR86_RS19810at 459.536 kb on - strand, within ABZR86_RS19810at 459.536 kb on - strand, within ABZR86_RS19810at 459.536 kb on - strand, within ABZR86_RS19810at 459.536 kb on - strand, within ABZR86_RS19810at 459.536 kb on - strand, within ABZR86_RS19810at 459.536 kb on - strand, within ABZR86_RS19810at 459.536 kb on - strand, within ABZR86_RS19810at 459.536 kb on - strand, within ABZR86_RS19810at 459.536 kb on - strand, within ABZR86_RS19810at 459.536 kb on - strand, within ABZR86_RS19810at 459.536 kb on - strand, within ABZR86_RS19810at 459.536 kb on - strand, within ABZR86_RS19810at 459.668 kb on + strand, within ABZR86_RS19810at 459.669 kb on - strand, within ABZR86_RS19810at 459.767 kb on - strandat 459.767 kb on - strandat 459.841 kb on - strandat 459.961 kb on - strandat 460.168 kb on + strand, within ABZR86_RS19815at 460.168 kb on + strand, within ABZR86_RS19815at 460.168 kb on + strand, within ABZR86_RS19815at 460.168 kb on + strand, within ABZR86_RS19815at 460.168 kb on + strand, within ABZR86_RS19815at 460.169 kb on - strand, within ABZR86_RS19815at 460.176 kb on + strand, within ABZR86_RS19815at 460.176 kb on + strand, within ABZR86_RS19815at 460.176 kb on + strand, within ABZR86_RS19815at 460.176 kb on + strand, within ABZR86_RS19815at 460.176 kb on + strand, within ABZR86_RS19815at 460.177 kb on - strand, within ABZR86_RS19815at 460.177 kb on - strand, within ABZR86_RS19815at 460.177 kb on - strand, within ABZR86_RS19815at 460.177 kb on - strand, within ABZR86_RS19815at 460.177 kb on - strand, within ABZR86_RS19815at 460.177 kb on - strand, within ABZR86_RS19815

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.01 mg/ml
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457,400 + +0.2
457,400 + -0.8
457,400 + +0.0
457,401 - -0.9
457,401 - -0.3
457,401 - -0.4
457,401 - +0.4
457,401 - +0.1
457,401 - +0.2
457,486 + +1.7
457,486 + -0.8
457,486 + -1.3
457,487 - -2.2
457,487 - +1.2
457,487 - +0.3
457,534 + ABZR86_RS19800 0.14 -0.6
457,534 + ABZR86_RS19800 0.14 -1.1
457,534 + ABZR86_RS19800 0.14 +0.1
457,534 + ABZR86_RS19800 0.14 -0.9
457,534 + ABZR86_RS19800 0.14 +0.1
457,535 - ABZR86_RS19800 0.14 +0.7
457,535 - ABZR86_RS19800 0.14 -0.3
457,535 - ABZR86_RS19800 0.14 -0.6
457,535 - ABZR86_RS19800 0.14 +0.1
457,535 - ABZR86_RS19800 0.14 -0.7
457,535 - ABZR86_RS19800 0.14 +0.6
457,535 - ABZR86_RS19800 0.14 -0.8
457,535 - ABZR86_RS19800 0.14 -0.4
457,535 - ABZR86_RS19800 0.14 +0.1
457,535 - ABZR86_RS19800 0.14 +0.0
457,535 - ABZR86_RS19800 0.14 -0.1
457,589 + ABZR86_RS19800 0.20 -0.4
457,590 - ABZR86_RS19800 0.20 -0.8
457,600 + ABZR86_RS19800 0.21 -0.6
457,600 + ABZR86_RS19800 0.21 -0.6
457,600 + ABZR86_RS19800 0.21 +0.1
457,601 - ABZR86_RS19800 0.21 -0.3
457,795 + ABZR86_RS19800 0.43 +0.2
457,796 - ABZR86_RS19800 0.43 -0.0
457,796 - ABZR86_RS19800 0.43 -0.7
458,188 + ABZR86_RS19800 0.86 -0.7
458,188 + ABZR86_RS19800 0.86 -0.5
458,188 + ABZR86_RS19800 0.86 +0.3
458,188 + ABZR86_RS19800 0.86 -0.2
458,401 + +0.5
458,401 + -0.7
458,401 + +0.5
458,401 + -0.2
458,401 + -1.3
458,401 + -0.9
458,401 + -1.7
458,401 + -0.5
458,401 + -0.3
458,401 + -1.0
458,401 + -0.6
458,401 + -0.4
458,401 + -1.9
458,401 + -1.1
458,401 + -0.5
458,402 - +0.3
458,402 - -1.4
458,402 - -0.9
458,402 - -1.1
458,402 - -0.4
458,583 + ABZR86_RS19805 0.28 -2.2
458,583 + ABZR86_RS19805 0.28 +0.2
458,584 + ABZR86_RS19805 0.28 -0.1
458,883 + ABZR86_RS19805 0.59 -2.0
458,883 + ABZR86_RS19805 0.59 -1.4
458,883 + ABZR86_RS19805 0.59 -1.6
458,883 + ABZR86_RS19805 0.59 -0.4
458,884 - ABZR86_RS19805 0.60 -0.8
458,884 - ABZR86_RS19805 0.60 -0.8
458,939 - ABZR86_RS19805 0.65 +0.1
458,939 - ABZR86_RS19805 0.65 -1.3
458,939 - ABZR86_RS19805 0.65 -0.7
459,016 - ABZR86_RS19805 0.73 -1.2
459,072 + ABZR86_RS19805 0.79 -1.0
459,073 - ABZR86_RS19805 0.79 -1.6
459,130 - ABZR86_RS19805 0.85 -1.6
459,240 + -1.1
459,240 + -0.3
459,241 - -3.1
459,241 - -1.6
459,241 - -1.4
459,241 - +0.3
459,257 - +0.3
459,357 + -0.3
459,357 + -0.8
459,358 - +0.0
459,431 - +0.0
459,471 + ABZR86_RS19810 0.15 -0.5
459,471 + ABZR86_RS19810 0.15 -1.2
459,471 + ABZR86_RS19810 0.15 +0.1
459,471 + ABZR86_RS19810 0.15 -0.1
459,471 + ABZR86_RS19810 0.15 -0.8
459,472 - ABZR86_RS19810 0.15 -0.2
459,535 + ABZR86_RS19810 0.34 +0.0
459,535 + ABZR86_RS19810 0.34 -0.2
459,535 + ABZR86_RS19810 0.34 -0.0
459,535 + ABZR86_RS19810 0.34 -0.2
459,535 + ABZR86_RS19810 0.34 -0.4
459,535 + ABZR86_RS19810 0.34 +0.1
459,535 + ABZR86_RS19810 0.34 -0.1
459,535 + ABZR86_RS19810 0.34 -0.8
459,535 + ABZR86_RS19810 0.34 +0.2
459,535 + ABZR86_RS19810 0.34 +1.0
459,536 - ABZR86_RS19810 0.35 +0.3
459,536 - ABZR86_RS19810 0.35 -0.2
459,536 - ABZR86_RS19810 0.35 +0.2
459,536 - ABZR86_RS19810 0.35 +0.1
459,536 - ABZR86_RS19810 0.35 +0.3
459,536 - ABZR86_RS19810 0.35 -0.2
459,536 - ABZR86_RS19810 0.35 -0.2
459,536 - ABZR86_RS19810 0.35 -0.1
459,536 - ABZR86_RS19810 0.35 -0.9
459,536 - ABZR86_RS19810 0.35 -0.3
459,536 - ABZR86_RS19810 0.35 -0.2
459,536 - ABZR86_RS19810 0.35 -0.6
459,536 - ABZR86_RS19810 0.35 +0.0
459,536 - ABZR86_RS19810 0.35 -1.1
459,536 - ABZR86_RS19810 0.35 +0.3
459,536 - ABZR86_RS19810 0.35 +0.2
459,668 + ABZR86_RS19810 0.75 -0.2
459,669 - ABZR86_RS19810 0.75 -0.3
459,767 - +0.3
459,767 - -0.2
459,841 - +1.1
459,961 - -0.5
460,168 + ABZR86_RS19815 0.18 +1.1
460,168 + ABZR86_RS19815 0.18 +0.2
460,168 + ABZR86_RS19815 0.18 +0.3
460,168 + ABZR86_RS19815 0.18 +0.1
460,168 + ABZR86_RS19815 0.18 -0.5
460,169 - ABZR86_RS19815 0.18 +1.2
460,176 + ABZR86_RS19815 0.18 +0.0
460,176 + ABZR86_RS19815 0.18 -0.0
460,176 + ABZR86_RS19815 0.18 +2.2
460,176 + ABZR86_RS19815 0.18 -0.0
460,176 + ABZR86_RS19815 0.18 +0.8
460,177 - ABZR86_RS19815 0.18 -0.1
460,177 - ABZR86_RS19815 0.18 -0.0
460,177 - ABZR86_RS19815 0.18 +0.0
460,177 - ABZR86_RS19815 0.18 +0.0
460,177 - ABZR86_RS19815 0.18 +0.4
460,177 - ABZR86_RS19815 0.18 -0.5

Or see this region's nucleotide sequence