Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS18895

Experiment: A22 0.01 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS18890 and ABZR86_RS18895 are separated by 209 nucleotidesABZR86_RS18895 and ABZR86_RS18900 are separated by 190 nucleotides ABZR86_RS18890: ABZR86_RS18890 - energy transducer TonB, at 208,652 to 209,683 _RS18890 ABZR86_RS18895: ABZR86_RS18895 - serine hydrolase domain-containing protein, at 209,893 to 211,296 _RS18895 ABZR86_RS18900: ABZR86_RS18900 - GMC family oxidoreductase N-terminal domain-containing protein, at 211,487 to 213,088 _RS18900 Position (kb) 209 210 211 212Strain fitness (log2 ratio) -2 -1 0 1at 208.964 kb on + strand, within ABZR86_RS18890at 208.964 kb on + strand, within ABZR86_RS18890at 208.964 kb on + strand, within ABZR86_RS18890at 208.965 kb on - strand, within ABZR86_RS18890at 209.045 kb on - strand, within ABZR86_RS18890at 209.129 kb on + strand, within ABZR86_RS18890at 209.130 kb on - strand, within ABZR86_RS18890at 209.130 kb on - strand, within ABZR86_RS18890at 209.140 kb on + strand, within ABZR86_RS18890at 209.613 kb on - strandat 209.681 kb on + strandat 209.682 kb on - strandat 209.682 kb on - strandat 209.682 kb on - strandat 210.119 kb on + strand, within ABZR86_RS18895at 210.120 kb on - strand, within ABZR86_RS18895at 210.413 kb on + strand, within ABZR86_RS18895at 210.414 kb on - strand, within ABZR86_RS18895at 210.414 kb on - strand, within ABZR86_RS18895at 210.416 kb on + strand, within ABZR86_RS18895at 210.416 kb on + strand, within ABZR86_RS18895at 210.416 kb on + strand, within ABZR86_RS18895at 210.416 kb on + strand, within ABZR86_RS18895at 210.416 kb on + strand, within ABZR86_RS18895at 210.417 kb on - strand, within ABZR86_RS18895at 210.417 kb on - strand, within ABZR86_RS18895at 210.417 kb on - strand, within ABZR86_RS18895at 210.417 kb on - strand, within ABZR86_RS18895at 210.417 kb on - strand, within ABZR86_RS18895at 210.417 kb on - strand, within ABZR86_RS18895at 210.512 kb on + strand, within ABZR86_RS18895at 210.567 kb on - strand, within ABZR86_RS18895at 210.590 kb on + strand, within ABZR86_RS18895at 210.590 kb on + strand, within ABZR86_RS18895at 210.590 kb on + strand, within ABZR86_RS18895at 210.590 kb on + strand, within ABZR86_RS18895at 210.591 kb on - strand, within ABZR86_RS18895at 210.635 kb on + strand, within ABZR86_RS18895at 210.636 kb on - strand, within ABZR86_RS18895at 210.696 kb on - strand, within ABZR86_RS18895at 210.725 kb on + strand, within ABZR86_RS18895at 210.725 kb on + strand, within ABZR86_RS18895at 210.726 kb on - strand, within ABZR86_RS18895at 210.980 kb on + strand, within ABZR86_RS18895at 210.981 kb on - strand, within ABZR86_RS18895at 211.064 kb on + strand, within ABZR86_RS18895at 211.065 kb on - strand, within ABZR86_RS18895at 211.136 kb on - strand, within ABZR86_RS18895at 211.281 kb on + strandat 211.281 kb on + strandat 211.341 kb on + strandat 211.341 kb on + strandat 211.341 kb on + strandat 211.342 kb on - strandat 211.342 kb on - strandat 211.342 kb on - strandat 211.342 kb on - strandat 211.384 kb on + strandat 211.549 kb on + strandat 211.549 kb on + strandat 211.550 kb on - strandat 211.680 kb on + strand, within ABZR86_RS18900at 211.680 kb on + strand, within ABZR86_RS18900at 211.680 kb on + strand, within ABZR86_RS18900at 211.680 kb on + strand, within ABZR86_RS18900at 211.680 kb on + strand, within ABZR86_RS18900at 211.680 kb on + strand, within ABZR86_RS18900at 211.680 kb on + strand, within ABZR86_RS18900at 211.681 kb on - strand, within ABZR86_RS18900at 211.681 kb on - strand, within ABZR86_RS18900at 211.681 kb on - strand, within ABZR86_RS18900at 211.681 kb on - strand, within ABZR86_RS18900at 211.681 kb on - strand, within ABZR86_RS18900at 211.681 kb on - strand, within ABZR86_RS18900at 211.681 kb on - strand, within ABZR86_RS18900at 211.860 kb on + strand, within ABZR86_RS18900at 211.861 kb on - strand, within ABZR86_RS18900at 211.861 kb on - strand, within ABZR86_RS18900at 211.861 kb on - strand, within ABZR86_RS18900at 211.939 kb on - strand, within ABZR86_RS18900at 211.957 kb on - strand, within ABZR86_RS18900

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.01 mg/ml
remove
208,964 + ABZR86_RS18890 0.30 +0.1
208,964 + ABZR86_RS18890 0.30 +0.1
208,964 + ABZR86_RS18890 0.30 -0.3
208,965 - ABZR86_RS18890 0.30 -0.7
209,045 - ABZR86_RS18890 0.38 -0.0
209,129 + ABZR86_RS18890 0.46 -0.2
209,130 - ABZR86_RS18890 0.46 -0.6
209,130 - ABZR86_RS18890 0.46 -0.1
209,140 + ABZR86_RS18890 0.47 +0.0
209,613 - +0.5
209,681 + -0.1
209,682 - +0.2
209,682 - +0.0
209,682 - +0.1
210,119 + ABZR86_RS18895 0.16 +1.1
210,120 - ABZR86_RS18895 0.16 +0.3
210,413 + ABZR86_RS18895 0.37 -0.6
210,414 - ABZR86_RS18895 0.37 +0.1
210,414 - ABZR86_RS18895 0.37 +0.1
210,416 + ABZR86_RS18895 0.37 -0.0
210,416 + ABZR86_RS18895 0.37 -0.5
210,416 + ABZR86_RS18895 0.37 -0.6
210,416 + ABZR86_RS18895 0.37 -0.3
210,416 + ABZR86_RS18895 0.37 -0.8
210,417 - ABZR86_RS18895 0.37 -1.3
210,417 - ABZR86_RS18895 0.37 +0.2
210,417 - ABZR86_RS18895 0.37 -0.5
210,417 - ABZR86_RS18895 0.37 -0.7
210,417 - ABZR86_RS18895 0.37 +0.8
210,417 - ABZR86_RS18895 0.37 -0.1
210,512 + ABZR86_RS18895 0.44 -0.1
210,567 - ABZR86_RS18895 0.48 +0.1
210,590 + ABZR86_RS18895 0.50 -0.0
210,590 + ABZR86_RS18895 0.50 +0.1
210,590 + ABZR86_RS18895 0.50 +0.6
210,590 + ABZR86_RS18895 0.50 -0.7
210,591 - ABZR86_RS18895 0.50 -0.1
210,635 + ABZR86_RS18895 0.53 +0.6
210,636 - ABZR86_RS18895 0.53 -0.3
210,696 - ABZR86_RS18895 0.57 -0.2
210,725 + ABZR86_RS18895 0.59 +0.6
210,725 + ABZR86_RS18895 0.59 +0.6
210,726 - ABZR86_RS18895 0.59 +0.4
210,980 + ABZR86_RS18895 0.77 +0.3
210,981 - ABZR86_RS18895 0.77 -0.2
211,064 + ABZR86_RS18895 0.83 -0.0
211,065 - ABZR86_RS18895 0.83 -0.5
211,136 - ABZR86_RS18895 0.89 -0.1
211,281 + -0.7
211,281 + +0.4
211,341 + +0.1
211,341 + +0.3
211,341 + +0.5
211,342 - -0.3
211,342 - +0.2
211,342 - +0.7
211,342 - +0.3
211,384 + -0.3
211,549 + +0.5
211,549 + -0.1
211,550 - +0.3
211,680 + ABZR86_RS18900 0.12 -0.2
211,680 + ABZR86_RS18900 0.12 -0.4
211,680 + ABZR86_RS18900 0.12 -0.5
211,680 + ABZR86_RS18900 0.12 -1.1
211,680 + ABZR86_RS18900 0.12 -0.0
211,680 + ABZR86_RS18900 0.12 -0.2
211,680 + ABZR86_RS18900 0.12 -1.8
211,681 - ABZR86_RS18900 0.12 +0.7
211,681 - ABZR86_RS18900 0.12 -0.1
211,681 - ABZR86_RS18900 0.12 -0.3
211,681 - ABZR86_RS18900 0.12 +0.3
211,681 - ABZR86_RS18900 0.12 -0.1
211,681 - ABZR86_RS18900 0.12 +0.4
211,681 - ABZR86_RS18900 0.12 +0.9
211,860 + ABZR86_RS18900 0.23 +0.4
211,861 - ABZR86_RS18900 0.23 +0.2
211,861 - ABZR86_RS18900 0.23 -0.0
211,861 - ABZR86_RS18900 0.23 -0.3
211,939 - ABZR86_RS18900 0.28 +0.4
211,957 - ABZR86_RS18900 0.29 +0.6

Or see this region's nucleotide sequence