Experiment: A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS18870 and ABZR86_RS18875 are separated by 143 nucleotides ABZR86_RS18875 and ABZR86_RS18880 are separated by 87 nucleotides
ABZR86_RS18870: ABZR86_RS18870 - adenylyl-sulfate kinase, at 203,669 to 205,531
_RS18870
ABZR86_RS18875: ABZR86_RS18875 - glycine cleavage system aminomethyltransferase GcvT, at 205,675 to 206,775
_RS18875
ABZR86_RS18880: ABZR86_RS18880 - glycine cleavage system protein GcvH, at 206,863 to 207,258
_RS18880
Position (kb) 205
206
207 Strain fitness (log2 ratio) -1
0
1 at 204.677 kb on + strand, within ABZR86_RS18870 at 204.677 kb on + strand, within ABZR86_RS18870 at 204.677 kb on + strand, within ABZR86_RS18870 at 204.678 kb on - strand, within ABZR86_RS18870 at 204.839 kb on + strand, within ABZR86_RS18870 at 204.840 kb on - strand, within ABZR86_RS18870 at 205.100 kb on + strand, within ABZR86_RS18870 at 205.100 kb on + strand, within ABZR86_RS18870 at 205.100 kb on + strand, within ABZR86_RS18870 at 205.101 kb on - strand, within ABZR86_RS18870 at 205.101 kb on - strand, within ABZR86_RS18870 at 205.101 kb on - strand, within ABZR86_RS18870 at 205.364 kb on + strand at 205.364 kb on + strand at 205.365 kb on - strand at 205.365 kb on - strand at 205.419 kb on - strand at 205.499 kb on + strand at 205.499 kb on + strand at 205.500 kb on - strand at 205.556 kb on + strand at 205.557 kb on - strand at 205.557 kb on - strand at 205.557 kb on - strand at 205.692 kb on - strand at 205.927 kb on + strand, within ABZR86_RS18875 at 205.928 kb on - strand, within ABZR86_RS18875 at 205.928 kb on - strand, within ABZR86_RS18875 at 205.928 kb on - strand, within ABZR86_RS18875 at 205.979 kb on - strand, within ABZR86_RS18875 at 205.979 kb on - strand, within ABZR86_RS18875 at 206.254 kb on + strand, within ABZR86_RS18875 at 206.255 kb on - strand, within ABZR86_RS18875 at 206.735 kb on - strand at 206.806 kb on + strand at 206.806 kb on + strand at 206.806 kb on + strand at 206.807 kb on - strand at 206.807 kb on - strand at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.987 kb on - strand, within ABZR86_RS18880 at 207.073 kb on + strand, within ABZR86_RS18880 at 207.073 kb on + strand, within ABZR86_RS18880 at 207.074 kb on - strand, within ABZR86_RS18880 at 207.074 kb on - strand, within ABZR86_RS18880 at 207.074 kb on - strand, within ABZR86_RS18880 at 207.074 kb on - strand, within ABZR86_RS18880 at 207.074 kb on - strand, within ABZR86_RS18880 at 207.559 kb on - strand at 207.613 kb on - strand at 207.752 kb on + strand at 207.768 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.01 mg/ml remove 204,677 + ABZR86_RS18870 0.54 -0.4 204,677 + ABZR86_RS18870 0.54 +0.6 204,677 + ABZR86_RS18870 0.54 -0.2 204,678 - ABZR86_RS18870 0.54 -1.4 204,839 + ABZR86_RS18870 0.63 -0.7 204,840 - ABZR86_RS18870 0.63 -0.5 205,100 + ABZR86_RS18870 0.77 +0.3 205,100 + ABZR86_RS18870 0.77 -0.0 205,100 + ABZR86_RS18870 0.77 +0.4 205,101 - ABZR86_RS18870 0.77 +0.1 205,101 - ABZR86_RS18870 0.77 +0.4 205,101 - ABZR86_RS18870 0.77 -0.7 205,364 + -0.5 205,364 + -0.2 205,365 - -0.2 205,365 - -0.1 205,419 - -0.1 205,499 + -0.8 205,499 + +0.2 205,500 - -0.1 205,556 + -0.1 205,557 - -0.8 205,557 - -0.3 205,557 - +1.2 205,692 - +0.8 205,927 + ABZR86_RS18875 0.23 -1.0 205,928 - ABZR86_RS18875 0.23 -0.0 205,928 - ABZR86_RS18875 0.23 -0.6 205,928 - ABZR86_RS18875 0.23 +0.3 205,979 - ABZR86_RS18875 0.28 -0.1 205,979 - ABZR86_RS18875 0.28 +0.2 206,254 + ABZR86_RS18875 0.53 -1.2 206,255 - ABZR86_RS18875 0.53 -0.3 206,735 - +0.7 206,806 + +0.4 206,806 + -0.9 206,806 + -0.6 206,807 - +0.1 206,807 - +0.2 206,986 + ABZR86_RS18880 0.31 +0.2 206,986 + ABZR86_RS18880 0.31 +0.5 206,986 + ABZR86_RS18880 0.31 -0.2 206,986 + ABZR86_RS18880 0.31 -0.0 206,986 + ABZR86_RS18880 0.31 -0.9 206,986 + ABZR86_RS18880 0.31 -0.7 206,986 + ABZR86_RS18880 0.31 +0.0 206,986 + ABZR86_RS18880 0.31 -0.2 206,986 + ABZR86_RS18880 0.31 -0.4 206,986 + ABZR86_RS18880 0.31 -0.4 206,986 + ABZR86_RS18880 0.31 +0.1 206,986 + ABZR86_RS18880 0.31 -0.9 206,986 + ABZR86_RS18880 0.31 -0.2 206,986 + ABZR86_RS18880 0.31 -0.5 206,987 - ABZR86_RS18880 0.31 -0.6 207,073 + ABZR86_RS18880 0.53 -0.5 207,073 + ABZR86_RS18880 0.53 -0.7 207,074 - ABZR86_RS18880 0.53 -1.6 207,074 - ABZR86_RS18880 0.53 -0.4 207,074 - ABZR86_RS18880 0.53 -0.0 207,074 - ABZR86_RS18880 0.53 -0.7 207,074 - ABZR86_RS18880 0.53 -1.4 207,559 - -0.6 207,613 - +0.1 207,752 + -1.1 207,768 + +0.3
Or see this region's nucleotide sequence