Experiment: A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS18650 and ABZR86_RS18655 are separated by 255 nucleotides ABZR86_RS18655 and ABZR86_RS18660 are separated by 198 nucleotides
ABZR86_RS18650: ABZR86_RS18650 - hypothetical protein, at 154,325 to 155,074
_RS18650
ABZR86_RS18655: ABZR86_RS18655 - transketolase, at 155,330 to 157,339
_RS18655
ABZR86_RS18660: ABZR86_RS18660 - alpha/beta hydrolase, at 157,538 to 158,554
_RS18660
Position (kb) 155
156
157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 154.335 kb on + strand at 154.364 kb on - strand at 154.434 kb on + strand, within ABZR86_RS18650 at 154.434 kb on + strand, within ABZR86_RS18650 at 154.434 kb on + strand, within ABZR86_RS18650 at 154.435 kb on - strand, within ABZR86_RS18650 at 154.435 kb on - strand, within ABZR86_RS18650 at 154.435 kb on - strand, within ABZR86_RS18650 at 154.440 kb on + strand, within ABZR86_RS18650 at 154.440 kb on + strand, within ABZR86_RS18650 at 154.440 kb on + strand, within ABZR86_RS18650 at 154.440 kb on + strand, within ABZR86_RS18650 at 154.440 kb on + strand, within ABZR86_RS18650 at 154.440 kb on + strand, within ABZR86_RS18650 at 154.440 kb on + strand, within ABZR86_RS18650 at 154.440 kb on + strand, within ABZR86_RS18650 at 154.441 kb on - strand, within ABZR86_RS18650 at 154.441 kb on - strand, within ABZR86_RS18650 at 154.441 kb on - strand, within ABZR86_RS18650 at 154.441 kb on - strand, within ABZR86_RS18650 at 154.498 kb on - strand, within ABZR86_RS18650 at 154.498 kb on - strand, within ABZR86_RS18650 at 154.498 kb on - strand, within ABZR86_RS18650 at 154.498 kb on - strand, within ABZR86_RS18650 at 154.563 kb on + strand, within ABZR86_RS18650 at 154.563 kb on + strand, within ABZR86_RS18650 at 154.563 kb on + strand, within ABZR86_RS18650 at 154.563 kb on + strand, within ABZR86_RS18650 at 154.564 kb on - strand, within ABZR86_RS18650 at 154.564 kb on - strand, within ABZR86_RS18650 at 154.564 kb on - strand, within ABZR86_RS18650 at 154.564 kb on - strand, within ABZR86_RS18650 at 154.564 kb on - strand, within ABZR86_RS18650 at 154.564 kb on - strand, within ABZR86_RS18650 at 154.564 kb on - strand, within ABZR86_RS18650 at 154.564 kb on - strand, within ABZR86_RS18650 at 154.564 kb on - strand, within ABZR86_RS18650 at 154.564 kb on - strand, within ABZR86_RS18650 at 154.593 kb on + strand, within ABZR86_RS18650 at 154.593 kb on + strand, within ABZR86_RS18650 at 154.594 kb on - strand, within ABZR86_RS18650 at 154.614 kb on + strand, within ABZR86_RS18650 at 154.614 kb on + strand, within ABZR86_RS18650 at 154.614 kb on + strand, within ABZR86_RS18650 at 154.614 kb on + strand, within ABZR86_RS18650 at 154.614 kb on + strand, within ABZR86_RS18650 at 154.614 kb on + strand, within ABZR86_RS18650 at 154.615 kb on - strand, within ABZR86_RS18650 at 154.615 kb on - strand, within ABZR86_RS18650 at 154.615 kb on - strand, within ABZR86_RS18650 at 154.615 kb on - strand, within ABZR86_RS18650 at 154.615 kb on - strand, within ABZR86_RS18650 at 154.615 kb on - strand, within ABZR86_RS18650 at 154.728 kb on + strand, within ABZR86_RS18650 at 154.729 kb on - strand, within ABZR86_RS18650 at 154.729 kb on - strand, within ABZR86_RS18650 at 154.729 kb on - strand, within ABZR86_RS18650 at 154.747 kb on - strand, within ABZR86_RS18650 at 154.959 kb on + strand, within ABZR86_RS18650 at 154.959 kb on + strand, within ABZR86_RS18650 at 154.959 kb on + strand, within ABZR86_RS18650 at 154.959 kb on + strand, within ABZR86_RS18650 at 154.959 kb on + strand, within ABZR86_RS18650 at 154.960 kb on - strand, within ABZR86_RS18650 at 154.960 kb on - strand, within ABZR86_RS18650 at 154.960 kb on - strand, within ABZR86_RS18650 at 154.960 kb on - strand, within ABZR86_RS18650 at 154.960 kb on - strand, within ABZR86_RS18650 at 154.960 kb on - strand, within ABZR86_RS18650 at 155.060 kb on + strand at 155.060 kb on + strand at 155.060 kb on + strand at 155.060 kb on + strand at 155.060 kb on + strand at 155.060 kb on + strand at 155.061 kb on - strand at 155.061 kb on - strand at 155.061 kb on - strand at 155.061 kb on - strand at 155.081 kb on + strand at 155.081 kb on + strand at 155.081 kb on + strand at 155.082 kb on - strand at 155.082 kb on - strand at 155.082 kb on - strand at 155.082 kb on - strand at 155.176 kb on + strand at 155.176 kb on + strand at 155.218 kb on + strand at 155.224 kb on - strand at 155.234 kb on + strand at 155.235 kb on - strand at 155.235 kb on - strand at 155.235 kb on - strand at 155.235 kb on - strand at 155.235 kb on - strand at 155.271 kb on + strand at 155.271 kb on + strand at 155.272 kb on - strand at 155.272 kb on - strand at 155.371 kb on - strand at 155.371 kb on - strand at 156.170 kb on + strand, within ABZR86_RS18655 at 156.170 kb on + strand, within ABZR86_RS18655 at 156.170 kb on + strand, within ABZR86_RS18655 at 156.170 kb on + strand, within ABZR86_RS18655 at 156.171 kb on - strand, within ABZR86_RS18655 at 156.200 kb on + strand, within ABZR86_RS18655 at 156.200 kb on + strand, within ABZR86_RS18655 at 156.200 kb on + strand, within ABZR86_RS18655 at 156.201 kb on - strand, within ABZR86_RS18655 at 156.201 kb on - strand, within ABZR86_RS18655 at 156.359 kb on + strand, within ABZR86_RS18655 at 156.359 kb on + strand, within ABZR86_RS18655 at 156.360 kb on - strand, within ABZR86_RS18655 at 156.551 kb on + strand, within ABZR86_RS18655 at 156.551 kb on + strand, within ABZR86_RS18655 at 156.551 kb on + strand, within ABZR86_RS18655 at 156.551 kb on + strand, within ABZR86_RS18655 at 156.551 kb on + strand, within ABZR86_RS18655 at 156.551 kb on + strand, within ABZR86_RS18655 at 156.551 kb on + strand, within ABZR86_RS18655 at 156.552 kb on - strand, within ABZR86_RS18655 at 156.552 kb on - strand, within ABZR86_RS18655 at 156.552 kb on - strand, within ABZR86_RS18655 at 156.552 kb on - strand, within ABZR86_RS18655 at 156.552 kb on - strand, within ABZR86_RS18655 at 156.552 kb on - strand, within ABZR86_RS18655 at 156.557 kb on + strand, within ABZR86_RS18655 at 156.558 kb on - strand, within ABZR86_RS18655 at 156.561 kb on - strand, within ABZR86_RS18655 at 156.561 kb on - strand, within ABZR86_RS18655 at 156.630 kb on - strand, within ABZR86_RS18655 at 156.793 kb on + strand, within ABZR86_RS18655 at 156.793 kb on + strand, within ABZR86_RS18655 at 156.794 kb on - strand, within ABZR86_RS18655 at 157.144 kb on - strand at 157.208 kb on + strand at 157.209 kb on - strand at 157.209 kb on - strand at 157.209 kb on - strand at 157.209 kb on - strand at 157.478 kb on + strand at 157.478 kb on + strand at 157.478 kb on + strand at 157.478 kb on + strand at 157.478 kb on + strand at 157.479 kb on - strand at 157.479 kb on - strand at 157.543 kb on + strand at 157.543 kb on + strand at 157.543 kb on + strand at 157.543 kb on + strand at 157.543 kb on + strand at 157.543 kb on + strand at 157.544 kb on - strand at 157.544 kb on - strand at 157.544 kb on - strand at 157.544 kb on - strand at 157.667 kb on + strand, within ABZR86_RS18660 at 157.668 kb on - strand, within ABZR86_RS18660 at 157.668 kb on - strand, within ABZR86_RS18660 at 157.841 kb on + strand, within ABZR86_RS18660 at 157.841 kb on + strand, within ABZR86_RS18660 at 157.841 kb on + strand, within ABZR86_RS18660 at 157.841 kb on + strand, within ABZR86_RS18660 at 157.841 kb on + strand, within ABZR86_RS18660 at 157.841 kb on + strand, within ABZR86_RS18660 at 157.841 kb on + strand, within ABZR86_RS18660 at 157.841 kb on + strand, within ABZR86_RS18660 at 157.841 kb on + strand, within ABZR86_RS18660 at 157.841 kb on + strand, within ABZR86_RS18660 at 157.841 kb on + strand, within ABZR86_RS18660 at 157.842 kb on - strand, within ABZR86_RS18660 at 157.842 kb on - strand, within ABZR86_RS18660 at 157.842 kb on - strand, within ABZR86_RS18660 at 157.842 kb on - strand, within ABZR86_RS18660 at 157.842 kb on - strand, within ABZR86_RS18660 at 157.842 kb on - strand, within ABZR86_RS18660 at 157.842 kb on - strand, within ABZR86_RS18660 at 157.842 kb on - strand, within ABZR86_RS18660 at 157.842 kb on - strand, within ABZR86_RS18660 at 157.842 kb on - strand, within ABZR86_RS18660 at 157.842 kb on - strand, within ABZR86_RS18660 at 157.943 kb on + strand, within ABZR86_RS18660 at 157.943 kb on + strand, within ABZR86_RS18660 at 157.943 kb on + strand, within ABZR86_RS18660 at 157.943 kb on + strand, within ABZR86_RS18660 at 157.943 kb on + strand, within ABZR86_RS18660 at 157.943 kb on + strand, within ABZR86_RS18660 at 157.944 kb on - strand, within ABZR86_RS18660 at 157.944 kb on - strand, within ABZR86_RS18660 at 157.944 kb on - strand, within ABZR86_RS18660 at 157.944 kb on - strand, within ABZR86_RS18660 at 157.944 kb on - strand, within ABZR86_RS18660 at 157.944 kb on - strand, within ABZR86_RS18660 at 157.991 kb on + strand, within ABZR86_RS18660 at 157.991 kb on + strand, within ABZR86_RS18660 at 157.992 kb on - strand, within ABZR86_RS18660 at 157.992 kb on - strand, within ABZR86_RS18660 at 158.139 kb on - strand, within ABZR86_RS18660 at 158.154 kb on - strand, within ABZR86_RS18660 at 158.154 kb on - strand, within ABZR86_RS18660 at 158.154 kb on - strand, within ABZR86_RS18660 at 158.252 kb on + strand, within ABZR86_RS18660 at 158.252 kb on + strand, within ABZR86_RS18660 at 158.252 kb on + strand, within ABZR86_RS18660 at 158.252 kb on + strand, within ABZR86_RS18660 at 158.252 kb on + strand, within ABZR86_RS18660 at 158.252 kb on + strand, within ABZR86_RS18660 at 158.252 kb on + strand, within ABZR86_RS18660 at 158.252 kb on + strand, within ABZR86_RS18660 at 158.252 kb on + strand, within ABZR86_RS18660 at 158.252 kb on + strand, within ABZR86_RS18660 at 158.252 kb on + strand, within ABZR86_RS18660 at 158.252 kb on + strand, within ABZR86_RS18660 at 158.252 kb on + strand, within ABZR86_RS18660 at 158.252 kb on + strand, within ABZR86_RS18660 at 158.252 kb on + strand, within ABZR86_RS18660 at 158.253 kb on - strand, within ABZR86_RS18660 at 158.253 kb on - strand, within ABZR86_RS18660 at 158.253 kb on - strand, within ABZR86_RS18660 at 158.253 kb on - strand, within ABZR86_RS18660 at 158.253 kb on - strand, within ABZR86_RS18660 at 158.253 kb on - strand, within ABZR86_RS18660 at 158.253 kb on - strand, within ABZR86_RS18660
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.01 mg/ml remove 154,335 + -1.0 154,364 - +0.2 154,434 + ABZR86_RS18650 0.15 -0.1 154,434 + ABZR86_RS18650 0.15 -0.2 154,434 + ABZR86_RS18650 0.15 +0.6 154,435 - ABZR86_RS18650 0.15 +0.4 154,435 - ABZR86_RS18650 0.15 +0.2 154,435 - ABZR86_RS18650 0.15 -0.4 154,440 + ABZR86_RS18650 0.15 -0.2 154,440 + ABZR86_RS18650 0.15 -0.4 154,440 + ABZR86_RS18650 0.15 -1.1 154,440 + ABZR86_RS18650 0.15 -0.0 154,440 + ABZR86_RS18650 0.15 +1.1 154,440 + ABZR86_RS18650 0.15 +0.1 154,440 + ABZR86_RS18650 0.15 -0.8 154,440 + ABZR86_RS18650 0.15 -0.2 154,441 - ABZR86_RS18650 0.15 +0.5 154,441 - ABZR86_RS18650 0.15 -0.2 154,441 - ABZR86_RS18650 0.15 -1.0 154,441 - ABZR86_RS18650 0.15 +0.4 154,498 - ABZR86_RS18650 0.23 -0.0 154,498 - ABZR86_RS18650 0.23 -0.1 154,498 - ABZR86_RS18650 0.23 -0.6 154,498 - ABZR86_RS18650 0.23 -0.2 154,563 + ABZR86_RS18650 0.32 -0.3 154,563 + ABZR86_RS18650 0.32 -0.2 154,563 + ABZR86_RS18650 0.32 -0.1 154,563 + ABZR86_RS18650 0.32 -0.8 154,564 - ABZR86_RS18650 0.32 +0.6 154,564 - ABZR86_RS18650 0.32 +0.4 154,564 - ABZR86_RS18650 0.32 +0.0 154,564 - ABZR86_RS18650 0.32 +0.5 154,564 - ABZR86_RS18650 0.32 +0.3 154,564 - ABZR86_RS18650 0.32 -0.0 154,564 - ABZR86_RS18650 0.32 +0.6 154,564 - ABZR86_RS18650 0.32 -0.2 154,564 - ABZR86_RS18650 0.32 -0.0 154,564 - ABZR86_RS18650 0.32 +1.1 154,593 + ABZR86_RS18650 0.36 -0.5 154,593 + ABZR86_RS18650 0.36 +0.2 154,594 - ABZR86_RS18650 0.36 -0.1 154,614 + ABZR86_RS18650 0.39 -0.3 154,614 + ABZR86_RS18650 0.39 +0.3 154,614 + ABZR86_RS18650 0.39 -0.5 154,614 + ABZR86_RS18650 0.39 +0.6 154,614 + ABZR86_RS18650 0.39 -0.7 154,614 + ABZR86_RS18650 0.39 +0.1 154,615 - ABZR86_RS18650 0.39 -0.4 154,615 - ABZR86_RS18650 0.39 +0.3 154,615 - ABZR86_RS18650 0.39 -0.1 154,615 - ABZR86_RS18650 0.39 -0.7 154,615 - ABZR86_RS18650 0.39 +1.2 154,615 - ABZR86_RS18650 0.39 -0.2 154,728 + ABZR86_RS18650 0.54 -0.6 154,729 - ABZR86_RS18650 0.54 +0.3 154,729 - ABZR86_RS18650 0.54 +0.0 154,729 - ABZR86_RS18650 0.54 -0.1 154,747 - ABZR86_RS18650 0.56 +0.0 154,959 + ABZR86_RS18650 0.85 +0.3 154,959 + ABZR86_RS18650 0.85 +0.1 154,959 + ABZR86_RS18650 0.85 +0.4 154,959 + ABZR86_RS18650 0.85 -0.3 154,959 + ABZR86_RS18650 0.85 +0.2 154,960 - ABZR86_RS18650 0.85 -0.0 154,960 - ABZR86_RS18650 0.85 -0.1 154,960 - ABZR86_RS18650 0.85 -0.0 154,960 - ABZR86_RS18650 0.85 +0.2 154,960 - ABZR86_RS18650 0.85 +0.2 154,960 - ABZR86_RS18650 0.85 -1.1 155,060 + -0.3 155,060 + +0.6 155,060 + -0.2 155,060 + +0.4 155,060 + +0.0 155,060 + -0.1 155,061 - -0.5 155,061 - -1.1 155,061 - -0.6 155,061 - -0.3 155,081 + -0.6 155,081 + -0.2 155,081 + -0.3 155,082 - +0.7 155,082 - +0.4 155,082 - -0.5 155,082 - -0.4 155,176 + -0.3 155,176 + -0.4 155,218 + -1.1 155,224 - +0.0 155,234 + -0.6 155,235 - +1.5 155,235 - +0.5 155,235 - +0.6 155,235 - -0.4 155,235 - +1.1 155,271 + -0.7 155,271 + -0.0 155,272 - -1.1 155,272 - +0.4 155,371 - -0.8 155,371 - -1.9 156,170 + ABZR86_RS18655 0.42 -0.0 156,170 + ABZR86_RS18655 0.42 +1.5 156,170 + ABZR86_RS18655 0.42 +1.1 156,170 + ABZR86_RS18655 0.42 -0.9 156,171 - ABZR86_RS18655 0.42 -0.1 156,200 + ABZR86_RS18655 0.43 +0.1 156,200 + ABZR86_RS18655 0.43 -1.9 156,200 + ABZR86_RS18655 0.43 +1.9 156,201 - ABZR86_RS18655 0.43 -0.1 156,201 - ABZR86_RS18655 0.43 -0.3 156,359 + ABZR86_RS18655 0.51 -3.5 156,359 + ABZR86_RS18655 0.51 -2.1 156,360 - ABZR86_RS18655 0.51 +0.5 156,551 + ABZR86_RS18655 0.61 -1.8 156,551 + ABZR86_RS18655 0.61 -1.3 156,551 + ABZR86_RS18655 0.61 -2.1 156,551 + ABZR86_RS18655 0.61 +1.5 156,551 + ABZR86_RS18655 0.61 -0.7 156,551 + ABZR86_RS18655 0.61 -2.4 156,551 + ABZR86_RS18655 0.61 +1.9 156,552 - ABZR86_RS18655 0.61 -1.5 156,552 - ABZR86_RS18655 0.61 -0.4 156,552 - ABZR86_RS18655 0.61 -0.1 156,552 - ABZR86_RS18655 0.61 -0.3 156,552 - ABZR86_RS18655 0.61 -2.8 156,552 - ABZR86_RS18655 0.61 -0.6 156,557 + ABZR86_RS18655 0.61 -1.7 156,558 - ABZR86_RS18655 0.61 -0.4 156,561 - ABZR86_RS18655 0.61 -1.0 156,561 - ABZR86_RS18655 0.61 -1.4 156,630 - ABZR86_RS18655 0.65 -0.4 156,793 + ABZR86_RS18655 0.73 -0.6 156,793 + ABZR86_RS18655 0.73 -3.0 156,794 - ABZR86_RS18655 0.73 -0.5 157,144 - +0.5 157,208 + -1.3 157,209 - -1.4 157,209 - -2.5 157,209 - -0.2 157,209 - -1.3 157,478 + +0.3 157,478 + +0.2 157,478 + -0.1 157,478 + -0.6 157,478 + -0.3 157,479 - -0.6 157,479 - +0.5 157,543 + -0.8 157,543 + +0.2 157,543 + -0.1 157,543 + -0.5 157,543 + +0.1 157,543 + -0.1 157,544 - +0.1 157,544 - +0.3 157,544 - -0.0 157,544 - +0.2 157,667 + ABZR86_RS18660 0.13 +0.1 157,668 - ABZR86_RS18660 0.13 +0.1 157,668 - ABZR86_RS18660 0.13 -0.5 157,841 + ABZR86_RS18660 0.30 -0.6 157,841 + ABZR86_RS18660 0.30 -0.2 157,841 + ABZR86_RS18660 0.30 -0.3 157,841 + ABZR86_RS18660 0.30 +0.2 157,841 + ABZR86_RS18660 0.30 -0.2 157,841 + ABZR86_RS18660 0.30 -0.4 157,841 + ABZR86_RS18660 0.30 -0.6 157,841 + ABZR86_RS18660 0.30 +0.2 157,841 + ABZR86_RS18660 0.30 +0.1 157,841 + ABZR86_RS18660 0.30 -0.1 157,841 + ABZR86_RS18660 0.30 -0.1 157,842 - ABZR86_RS18660 0.30 +0.2 157,842 - ABZR86_RS18660 0.30 -0.1 157,842 - ABZR86_RS18660 0.30 +0.1 157,842 - ABZR86_RS18660 0.30 +0.7 157,842 - ABZR86_RS18660 0.30 -0.6 157,842 - ABZR86_RS18660 0.30 -0.0 157,842 - ABZR86_RS18660 0.30 +0.5 157,842 - ABZR86_RS18660 0.30 -0.5 157,842 - ABZR86_RS18660 0.30 +0.0 157,842 - ABZR86_RS18660 0.30 -0.1 157,842 - ABZR86_RS18660 0.30 -0.1 157,943 + ABZR86_RS18660 0.40 -0.7 157,943 + ABZR86_RS18660 0.40 -0.8 157,943 + ABZR86_RS18660 0.40 +0.7 157,943 + ABZR86_RS18660 0.40 -1.1 157,943 + ABZR86_RS18660 0.40 +0.5 157,943 + ABZR86_RS18660 0.40 -0.2 157,944 - ABZR86_RS18660 0.40 +0.1 157,944 - ABZR86_RS18660 0.40 +1.4 157,944 - ABZR86_RS18660 0.40 +0.2 157,944 - ABZR86_RS18660 0.40 +0.1 157,944 - ABZR86_RS18660 0.40 +0.1 157,944 - ABZR86_RS18660 0.40 +1.2 157,991 + ABZR86_RS18660 0.45 -0.3 157,991 + ABZR86_RS18660 0.45 +0.7 157,992 - ABZR86_RS18660 0.45 -0.0 157,992 - ABZR86_RS18660 0.45 -0.7 158,139 - ABZR86_RS18660 0.59 +0.6 158,154 - ABZR86_RS18660 0.61 -0.4 158,154 - ABZR86_RS18660 0.61 +0.4 158,154 - ABZR86_RS18660 0.61 +0.0 158,252 + ABZR86_RS18660 0.70 +0.3 158,252 + ABZR86_RS18660 0.70 -0.1 158,252 + ABZR86_RS18660 0.70 -0.1 158,252 + ABZR86_RS18660 0.70 -0.4 158,252 + ABZR86_RS18660 0.70 +0.4 158,252 + ABZR86_RS18660 0.70 +0.1 158,252 + ABZR86_RS18660 0.70 +0.1 158,252 + ABZR86_RS18660 0.70 +0.3 158,252 + ABZR86_RS18660 0.70 +0.1 158,252 + ABZR86_RS18660 0.70 +0.3 158,252 + ABZR86_RS18660 0.70 -1.2 158,252 + ABZR86_RS18660 0.70 -0.1 158,252 + ABZR86_RS18660 0.70 -0.9 158,252 + ABZR86_RS18660 0.70 +0.5 158,252 + ABZR86_RS18660 0.70 -0.1 158,253 - ABZR86_RS18660 0.70 +0.1 158,253 - ABZR86_RS18660 0.70 -0.7 158,253 - ABZR86_RS18660 0.70 -0.3 158,253 - ABZR86_RS18660 0.70 +0.1 158,253 - ABZR86_RS18660 0.70 -0.1 158,253 - ABZR86_RS18660 0.70 -0.2 158,253 - ABZR86_RS18660 0.70 +0.6
Or see this region's nucleotide sequence