Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS11870

Experiment: A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS11860 and ABZR86_RS11865 are separated by 60 nucleotidesABZR86_RS11865 and ABZR86_RS11870 overlap by 4 nucleotidesABZR86_RS11870 and ABZR86_RS11875 are separated by 52 nucleotidesABZR86_RS11875 and ABZR86_RS11880 are separated by 58 nucleotides ABZR86_RS11860: ABZR86_RS11860 - VacJ family lipoprotein, at 2,661,248 to 2,662,093 _RS11860 ABZR86_RS11865: ABZR86_RS11865 - STAS domain-containing protein, at 2,662,154 to 2,662,450 _RS11865 ABZR86_RS11870: ABZR86_RS11870 - phospholipid-binding protein MlaC, at 2,662,447 to 2,663,115 _RS11870 ABZR86_RS11875: ABZR86_RS11875 - outer membrane lipid asymmetry maintenance protein MlaD, at 2,663,168 to 2,664,040 _RS11875 ABZR86_RS11880: ABZR86_RS11880 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 2,664,099 to 2,664,866 _RS11880 Position (kb) 2662 2663 2664Strain fitness (log2 ratio) -3 -2 -1 0 1at 2661.478 kb on + strand, within ABZR86_RS11860at 2661.479 kb on - strand, within ABZR86_RS11860at 2661.484 kb on + strand, within ABZR86_RS11860at 2661.574 kb on + strand, within ABZR86_RS11860at 2661.575 kb on - strand, within ABZR86_RS11860at 2661.575 kb on - strand, within ABZR86_RS11860at 2661.749 kb on + strand, within ABZR86_RS11860at 2661.749 kb on + strand, within ABZR86_RS11860at 2661.749 kb on + strand, within ABZR86_RS11860at 2661.750 kb on - strand, within ABZR86_RS11860at 2661.750 kb on - strand, within ABZR86_RS11860at 2661.750 kb on - strand, within ABZR86_RS11860at 2661.771 kb on - strand, within ABZR86_RS11860at 2661.771 kb on - strand, within ABZR86_RS11860at 2661.771 kb on - strand, within ABZR86_RS11860at 2661.806 kb on + strand, within ABZR86_RS11860at 2661.806 kb on + strand, within ABZR86_RS11860at 2661.807 kb on - strand, within ABZR86_RS11860at 2661.809 kb on + strand, within ABZR86_RS11860at 2661.809 kb on + strand, within ABZR86_RS11860at 2661.809 kb on + strand, within ABZR86_RS11860at 2661.809 kb on + strand, within ABZR86_RS11860at 2661.809 kb on + strand, within ABZR86_RS11860at 2661.809 kb on + strand, within ABZR86_RS11860at 2661.810 kb on - strand, within ABZR86_RS11860at 2661.810 kb on - strand, within ABZR86_RS11860at 2661.810 kb on - strand, within ABZR86_RS11860at 2661.810 kb on - strand, within ABZR86_RS11860at 2661.810 kb on - strand, within ABZR86_RS11860at 2661.810 kb on - strand, within ABZR86_RS11860at 2661.810 kb on - strand, within ABZR86_RS11860at 2661.827 kb on + strand, within ABZR86_RS11860at 2661.828 kb on - strand, within ABZR86_RS11860at 2661.885 kb on - strand, within ABZR86_RS11860at 2661.885 kb on - strand, within ABZR86_RS11860at 2661.893 kb on + strand, within ABZR86_RS11860at 2661.894 kb on - strand, within ABZR86_RS11860at 2661.894 kb on - strand, within ABZR86_RS11860at 2661.894 kb on - strand, within ABZR86_RS11860at 2661.894 kb on - strand, within ABZR86_RS11860at 2661.932 kb on + strand, within ABZR86_RS11860at 2661.933 kb on - strand, within ABZR86_RS11860at 2661.941 kb on + strand, within ABZR86_RS11860at 2662.097 kb on - strandat 2662.097 kb on - strandat 2662.566 kb on - strand, within ABZR86_RS11870at 2662.566 kb on - strand, within ABZR86_RS11870at 2662.577 kb on + strand, within ABZR86_RS11870at 2662.577 kb on + strand, within ABZR86_RS11870at 2662.577 kb on + strand, within ABZR86_RS11870at 2662.577 kb on + strand, within ABZR86_RS11870at 2662.578 kb on - strand, within ABZR86_RS11870at 2662.578 kb on - strand, within ABZR86_RS11870at 2662.578 kb on - strand, within ABZR86_RS11870at 2662.578 kb on - strand, within ABZR86_RS11870at 2662.604 kb on + strand, within ABZR86_RS11870at 2662.604 kb on + strand, within ABZR86_RS11870at 2662.604 kb on + strand, within ABZR86_RS11870at 2662.605 kb on - strand, within ABZR86_RS11870at 2662.605 kb on - strand, within ABZR86_RS11870at 2662.605 kb on - strand, within ABZR86_RS11870at 2662.605 kb on - strand, within ABZR86_RS11870at 2662.605 kb on - strand, within ABZR86_RS11870at 2662.644 kb on - strand, within ABZR86_RS11870at 2662.644 kb on - strand, within ABZR86_RS11870at 2662.644 kb on - strand, within ABZR86_RS11870at 2662.754 kb on + strand, within ABZR86_RS11870at 2662.755 kb on - strand, within ABZR86_RS11870at 2662.797 kb on - strand, within ABZR86_RS11870at 2662.874 kb on + strand, within ABZR86_RS11870at 2662.933 kb on - strand, within ABZR86_RS11870at 2662.965 kb on + strand, within ABZR86_RS11870at 2663.349 kb on + strand, within ABZR86_RS11875at 2663.349 kb on + strand, within ABZR86_RS11875at 2663.350 kb on - strand, within ABZR86_RS11875at 2663.350 kb on - strand, within ABZR86_RS11875at 2663.412 kb on + strand, within ABZR86_RS11875at 2663.562 kb on + strand, within ABZR86_RS11875at 2663.563 kb on - strand, within ABZR86_RS11875at 2663.563 kb on - strand, within ABZR86_RS11875at 2663.686 kb on + strand, within ABZR86_RS11875at 2663.687 kb on - strand, within ABZR86_RS11875at 2663.687 kb on - strand, within ABZR86_RS11875at 2663.687 kb on - strand, within ABZR86_RS11875at 2663.687 kb on - strand, within ABZR86_RS11875at 2663.691 kb on + strand, within ABZR86_RS11875at 2663.691 kb on + strand, within ABZR86_RS11875at 2663.706 kb on + strand, within ABZR86_RS11875at 2663.706 kb on + strand, within ABZR86_RS11875at 2663.707 kb on - strand, within ABZR86_RS11875at 2663.707 kb on - strand, within ABZR86_RS11875at 2663.707 kb on - strand, within ABZR86_RS11875at 2663.770 kb on - strand, within ABZR86_RS11875at 2663.770 kb on - strand, within ABZR86_RS11875at 2663.770 kb on - strand, within ABZR86_RS11875at 2663.918 kb on - strand, within ABZR86_RS11875at 2663.918 kb on - strand, within ABZR86_RS11875at 2663.918 kb on - strand, within ABZR86_RS11875at 2663.919 kb on + strand, within ABZR86_RS11875at 2663.919 kb on + strand, within ABZR86_RS11875at 2663.920 kb on - strand, within ABZR86_RS11875at 2663.920 kb on - strand, within ABZR86_RS11875at 2663.920 kb on - strand, within ABZR86_RS11875at 2663.971 kb on - strandat 2664.021 kb on + strandat 2664.021 kb on + strandat 2664.075 kb on + strandat 2664.075 kb on + strandat 2664.075 kb on + strandat 2664.076 kb on - strandat 2664.076 kb on - strandat 2664.076 kb on - strandat 2664.087 kb on + strandat 2664.088 kb on - strandat 2664.088 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.01 mg/ml
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2,661,478 + ABZR86_RS11860 0.27 -1.0
2,661,479 - ABZR86_RS11860 0.27 -0.1
2,661,484 + ABZR86_RS11860 0.28 -0.9
2,661,574 + ABZR86_RS11860 0.39 -1.0
2,661,575 - ABZR86_RS11860 0.39 +0.2
2,661,575 - ABZR86_RS11860 0.39 -0.4
2,661,749 + ABZR86_RS11860 0.59 +0.2
2,661,749 + ABZR86_RS11860 0.59 -1.3
2,661,749 + ABZR86_RS11860 0.59 -0.1
2,661,750 - ABZR86_RS11860 0.59 -2.0
2,661,750 - ABZR86_RS11860 0.59 -1.1
2,661,750 - ABZR86_RS11860 0.59 -0.5
2,661,771 - ABZR86_RS11860 0.62 -0.3
2,661,771 - ABZR86_RS11860 0.62 -0.4
2,661,771 - ABZR86_RS11860 0.62 -1.8
2,661,806 + ABZR86_RS11860 0.66 -2.7
2,661,806 + ABZR86_RS11860 0.66 -0.1
2,661,807 - ABZR86_RS11860 0.66 -0.8
2,661,809 + ABZR86_RS11860 0.66 -1.4
2,661,809 + ABZR86_RS11860 0.66 +0.3
2,661,809 + ABZR86_RS11860 0.66 -1.0
2,661,809 + ABZR86_RS11860 0.66 -1.7
2,661,809 + ABZR86_RS11860 0.66 -1.0
2,661,809 + ABZR86_RS11860 0.66 -0.2
2,661,810 - ABZR86_RS11860 0.66 -1.2
2,661,810 - ABZR86_RS11860 0.66 -1.0
2,661,810 - ABZR86_RS11860 0.66 -0.8
2,661,810 - ABZR86_RS11860 0.66 -0.1
2,661,810 - ABZR86_RS11860 0.66 -0.9
2,661,810 - ABZR86_RS11860 0.66 -1.2
2,661,810 - ABZR86_RS11860 0.66 -0.9
2,661,827 + ABZR86_RS11860 0.68 -0.8
2,661,828 - ABZR86_RS11860 0.69 -1.7
2,661,885 - ABZR86_RS11860 0.75 -0.8
2,661,885 - ABZR86_RS11860 0.75 -0.8
2,661,893 + ABZR86_RS11860 0.76 -0.6
2,661,894 - ABZR86_RS11860 0.76 -0.6
2,661,894 - ABZR86_RS11860 0.76 -1.3
2,661,894 - ABZR86_RS11860 0.76 +0.7
2,661,894 - ABZR86_RS11860 0.76 -1.4
2,661,932 + ABZR86_RS11860 0.81 -0.5
2,661,933 - ABZR86_RS11860 0.81 -2.2
2,661,941 + ABZR86_RS11860 0.82 -0.8
2,662,097 - -0.4
2,662,097 - -0.0
2,662,566 - ABZR86_RS11870 0.18 -1.6
2,662,566 - ABZR86_RS11870 0.18 -1.9
2,662,577 + ABZR86_RS11870 0.19 -1.2
2,662,577 + ABZR86_RS11870 0.19 -1.3
2,662,577 + ABZR86_RS11870 0.19 -2.5
2,662,577 + ABZR86_RS11870 0.19 -1.1
2,662,578 - ABZR86_RS11870 0.20 -0.3
2,662,578 - ABZR86_RS11870 0.20 -2.0
2,662,578 - ABZR86_RS11870 0.20 -1.6
2,662,578 - ABZR86_RS11870 0.20 -1.0
2,662,604 + ABZR86_RS11870 0.23 -1.6
2,662,604 + ABZR86_RS11870 0.23 -1.9
2,662,604 + ABZR86_RS11870 0.23 -2.0
2,662,605 - ABZR86_RS11870 0.24 -1.0
2,662,605 - ABZR86_RS11870 0.24 -1.3
2,662,605 - ABZR86_RS11870 0.24 -1.1
2,662,605 - ABZR86_RS11870 0.24 -3.0
2,662,605 - ABZR86_RS11870 0.24 -0.7
2,662,644 - ABZR86_RS11870 0.29 -0.8
2,662,644 - ABZR86_RS11870 0.29 -1.7
2,662,644 - ABZR86_RS11870 0.29 -1.5
2,662,754 + ABZR86_RS11870 0.46 -0.6
2,662,755 - ABZR86_RS11870 0.46 -0.4
2,662,797 - ABZR86_RS11870 0.52 -0.8
2,662,874 + ABZR86_RS11870 0.64 -0.7
2,662,933 - ABZR86_RS11870 0.73 -0.9
2,662,965 + ABZR86_RS11870 0.77 -0.6
2,663,349 + ABZR86_RS11875 0.21 -0.6
2,663,349 + ABZR86_RS11875 0.21 -0.8
2,663,350 - ABZR86_RS11875 0.21 -0.1
2,663,350 - ABZR86_RS11875 0.21 -2.2
2,663,412 + ABZR86_RS11875 0.28 -0.5
2,663,562 + ABZR86_RS11875 0.45 -0.3
2,663,563 - ABZR86_RS11875 0.45 -1.2
2,663,563 - ABZR86_RS11875 0.45 -1.2
2,663,686 + ABZR86_RS11875 0.59 -0.8
2,663,687 - ABZR86_RS11875 0.59 -2.2
2,663,687 - ABZR86_RS11875 0.59 -0.5
2,663,687 - ABZR86_RS11875 0.59 -0.3
2,663,687 - ABZR86_RS11875 0.59 +0.3
2,663,691 + ABZR86_RS11875 0.60 -2.4
2,663,691 + ABZR86_RS11875 0.60 -0.7
2,663,706 + ABZR86_RS11875 0.62 -0.7
2,663,706 + ABZR86_RS11875 0.62 -0.1
2,663,707 - ABZR86_RS11875 0.62 -1.5
2,663,707 - ABZR86_RS11875 0.62 -1.1
2,663,707 - ABZR86_RS11875 0.62 -1.3
2,663,770 - ABZR86_RS11875 0.69 -0.6
2,663,770 - ABZR86_RS11875 0.69 -1.1
2,663,770 - ABZR86_RS11875 0.69 -0.2
2,663,918 - ABZR86_RS11875 0.86 -0.7
2,663,918 - ABZR86_RS11875 0.86 +0.8
2,663,918 - ABZR86_RS11875 0.86 -0.5
2,663,919 + ABZR86_RS11875 0.86 -0.8
2,663,919 + ABZR86_RS11875 0.86 -0.1
2,663,920 - ABZR86_RS11875 0.86 -0.8
2,663,920 - ABZR86_RS11875 0.86 -1.8
2,663,920 - ABZR86_RS11875 0.86 -0.6
2,663,971 - -0.4
2,664,021 + -1.7
2,664,021 + -1.5
2,664,075 + -0.8
2,664,075 + -0.8
2,664,075 + -0.1
2,664,076 - +0.5
2,664,076 - +0.3
2,664,076 - -0.2
2,664,087 + -1.5
2,664,088 - -0.3
2,664,088 - -0.1

Or see this region's nucleotide sequence