Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08480

Experiment: A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS08475 and ABZR86_RS08480 are separated by 69 nucleotidesABZR86_RS08480 and ABZR86_RS08485 are separated by 144 nucleotides ABZR86_RS08475: ABZR86_RS08475 - 2-methylcitrate synthase, at 1,891,655 to 1,892,800 _RS08475 ABZR86_RS08480: ABZR86_RS08480 - methylisocitrate lyase, at 1,892,870 to 1,893,757 _RS08480 ABZR86_RS08485: ABZR86_RS08485 - dicarboxylate/amino acid:cation symporter, at 1,893,902 to 1,895,218 _RS08485 Position (kb) 1892 1893 1894Strain fitness (log2 ratio) -1 0 1at 1891.992 kb on + strand, within ABZR86_RS08475at 1892.163 kb on + strand, within ABZR86_RS08475at 1892.163 kb on + strand, within ABZR86_RS08475at 1892.164 kb on - strand, within ABZR86_RS08475at 1892.164 kb on - strand, within ABZR86_RS08475at 1892.164 kb on - strand, within ABZR86_RS08475at 1892.164 kb on - strand, within ABZR86_RS08475at 1892.233 kb on - strand, within ABZR86_RS08475at 1892.370 kb on + strand, within ABZR86_RS08475at 1892.376 kb on + strand, within ABZR86_RS08475at 1892.377 kb on - strand, within ABZR86_RS08475at 1892.634 kb on + strand, within ABZR86_RS08475at 1892.682 kb on + strand, within ABZR86_RS08475at 1892.692 kb on - strandat 1892.722 kb on + strandat 1892.934 kb on + strandat 1893.124 kb on + strand, within ABZR86_RS08480at 1893.272 kb on - strand, within ABZR86_RS08480at 1893.524 kb on + strand, within ABZR86_RS08480at 1893.525 kb on - strand, within ABZR86_RS08480at 1893.568 kb on + strand, within ABZR86_RS08480at 1893.568 kb on + strand, within ABZR86_RS08480at 1893.568 kb on + strand, within ABZR86_RS08480at 1893.569 kb on - strand, within ABZR86_RS08480at 1893.569 kb on - strand, within ABZR86_RS08480at 1893.627 kb on + strand, within ABZR86_RS08480at 1893.627 kb on + strand, within ABZR86_RS08480at 1893.627 kb on + strand, within ABZR86_RS08480at 1893.770 kb on + strandat 1893.784 kb on + strandat 1893.889 kb on + strandat 1893.889 kb on + strandat 1893.889 kb on + strandat 1893.889 kb on + strandat 1893.889 kb on + strandat 1893.890 kb on - strandat 1893.890 kb on - strandat 1893.890 kb on - strandat 1893.890 kb on - strandat 1893.890 kb on - strandat 1894.289 kb on + strand, within ABZR86_RS08485at 1894.595 kb on + strand, within ABZR86_RS08485at 1894.595 kb on + strand, within ABZR86_RS08485at 1894.595 kb on + strand, within ABZR86_RS08485at 1894.595 kb on + strand, within ABZR86_RS08485at 1894.595 kb on + strand, within ABZR86_RS08485at 1894.595 kb on + strand, within ABZR86_RS08485at 1894.596 kb on - strand, within ABZR86_RS08485at 1894.596 kb on - strand, within ABZR86_RS08485at 1894.596 kb on - strand, within ABZR86_RS08485at 1894.596 kb on - strand, within ABZR86_RS08485at 1894.596 kb on - strand, within ABZR86_RS08485at 1894.596 kb on - strand, within ABZR86_RS08485at 1894.596 kb on - strand, within ABZR86_RS08485at 1894.598 kb on - strand, within ABZR86_RS08485at 1894.598 kb on - strand, within ABZR86_RS08485at 1894.739 kb on + strand, within ABZR86_RS08485

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.01 mg/ml
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1,891,992 + ABZR86_RS08475 0.29 -0.7
1,892,163 + ABZR86_RS08475 0.44 +0.0
1,892,163 + ABZR86_RS08475 0.44 +0.5
1,892,164 - ABZR86_RS08475 0.44 +0.6
1,892,164 - ABZR86_RS08475 0.44 +0.4
1,892,164 - ABZR86_RS08475 0.44 +0.9
1,892,164 - ABZR86_RS08475 0.44 -0.6
1,892,233 - ABZR86_RS08475 0.50 -0.0
1,892,370 + ABZR86_RS08475 0.62 -0.8
1,892,376 + ABZR86_RS08475 0.63 +0.6
1,892,377 - ABZR86_RS08475 0.63 +1.1
1,892,634 + ABZR86_RS08475 0.85 -0.2
1,892,682 + ABZR86_RS08475 0.90 -0.7
1,892,692 - +0.2
1,892,722 + +1.2
1,892,934 + -0.8
1,893,124 + ABZR86_RS08480 0.29 -1.1
1,893,272 - ABZR86_RS08480 0.45 -0.6
1,893,524 + ABZR86_RS08480 0.74 +0.4
1,893,525 - ABZR86_RS08480 0.74 +0.7
1,893,568 + ABZR86_RS08480 0.79 -1.0
1,893,568 + ABZR86_RS08480 0.79 -0.3
1,893,568 + ABZR86_RS08480 0.79 -0.8
1,893,569 - ABZR86_RS08480 0.79 -1.2
1,893,569 - ABZR86_RS08480 0.79 -1.7
1,893,627 + ABZR86_RS08480 0.85 -0.7
1,893,627 + ABZR86_RS08480 0.85 -0.7
1,893,627 + ABZR86_RS08480 0.85 -0.6
1,893,770 + +1.5
1,893,784 + +0.0
1,893,889 + -1.7
1,893,889 + -0.4
1,893,889 + -0.1
1,893,889 + -0.3
1,893,889 + -0.2
1,893,890 - +1.2
1,893,890 - -0.5
1,893,890 - -0.5
1,893,890 - +0.2
1,893,890 - +0.6
1,894,289 + ABZR86_RS08485 0.29 +0.4
1,894,595 + ABZR86_RS08485 0.53 -0.4
1,894,595 + ABZR86_RS08485 0.53 +0.4
1,894,595 + ABZR86_RS08485 0.53 +0.3
1,894,595 + ABZR86_RS08485 0.53 -0.5
1,894,595 + ABZR86_RS08485 0.53 -0.4
1,894,595 + ABZR86_RS08485 0.53 +1.0
1,894,596 - ABZR86_RS08485 0.53 +0.8
1,894,596 - ABZR86_RS08485 0.53 +0.2
1,894,596 - ABZR86_RS08485 0.53 +0.3
1,894,596 - ABZR86_RS08485 0.53 +0.6
1,894,596 - ABZR86_RS08485 0.53 +0.5
1,894,596 - ABZR86_RS08485 0.53 +0.6
1,894,596 - ABZR86_RS08485 0.53 +0.8
1,894,598 - ABZR86_RS08485 0.53 -0.5
1,894,598 - ABZR86_RS08485 0.53 -0.2
1,894,739 + ABZR86_RS08485 0.64 -0.5

Or see this region's nucleotide sequence