Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08180

Experiment: A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS08170 and ABZR86_RS08175 are separated by 46 nucleotidesABZR86_RS08175 and ABZR86_RS08180 are separated by 10 nucleotidesABZR86_RS08180 and ABZR86_RS08185 overlap by 4 nucleotidesABZR86_RS08185 and ABZR86_RS08190 are separated by 148 nucleotides ABZR86_RS08170: ABZR86_RS08170 - methionine--tRNA ligase, at 1,820,353 to 1,822,452 _RS08170 ABZR86_RS08175: ABZR86_RS08175 - alpha/beta hydrolase, at 1,822,499 to 1,823,191 _RS08175 ABZR86_RS08180: ABZR86_RS08180 - RnfABCDGE type electron transport complex subunit B, at 1,823,202 to 1,823,816 _RS08180 ABZR86_RS08185: ABZR86_RS08185 - endonuclease III, at 1,823,813 to 1,824,514 _RS08185 ABZR86_RS08190: ABZR86_RS08190 - hypothetical protein, at 1,824,663 to 1,825,142 _RS08190 Position (kb) 1823 1824Strain fitness (log2 ratio) -1 0 1 2at 1822.481 kb on - strandat 1822.568 kb on + strandat 1822.569 kb on - strand, within ABZR86_RS08175at 1822.616 kb on + strand, within ABZR86_RS08175at 1822.617 kb on - strand, within ABZR86_RS08175at 1822.999 kb on - strand, within ABZR86_RS08175at 1823.163 kb on + strandat 1823.163 kb on + strandat 1823.164 kb on - strandat 1823.164 kb on - strandat 1823.164 kb on - strandat 1823.164 kb on - strandat 1823.164 kb on - strandat 1823.186 kb on + strandat 1823.289 kb on + strand, within ABZR86_RS08180at 1823.290 kb on - strand, within ABZR86_RS08180at 1823.888 kb on + strand, within ABZR86_RS08185at 1823.888 kb on + strand, within ABZR86_RS08185at 1823.888 kb on + strand, within ABZR86_RS08185at 1823.888 kb on + strand, within ABZR86_RS08185at 1823.889 kb on - strand, within ABZR86_RS08185at 1823.976 kb on - strand, within ABZR86_RS08185at 1824.036 kb on - strand, within ABZR86_RS08185at 1824.036 kb on - strand, within ABZR86_RS08185at 1824.232 kb on + strand, within ABZR86_RS08185at 1824.232 kb on + strand, within ABZR86_RS08185at 1824.232 kb on + strand, within ABZR86_RS08185at 1824.232 kb on + strand, within ABZR86_RS08185at 1824.232 kb on + strand, within ABZR86_RS08185at 1824.233 kb on - strand, within ABZR86_RS08185at 1824.366 kb on - strand, within ABZR86_RS08185at 1824.502 kb on + strandat 1824.503 kb on - strandat 1824.503 kb on - strandat 1824.520 kb on - strandat 1824.575 kb on - strandat 1824.592 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.01 mg/ml
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1,822,481 - -0.1
1,822,568 + -0.9
1,822,569 - ABZR86_RS08175 0.10 -0.1
1,822,616 + ABZR86_RS08175 0.17 -0.1
1,822,617 - ABZR86_RS08175 0.17 +0.1
1,822,999 - ABZR86_RS08175 0.72 +0.5
1,823,163 + -0.8
1,823,163 + -0.1
1,823,164 - -0.7
1,823,164 - -0.1
1,823,164 - +0.8
1,823,164 - +0.1
1,823,164 - -0.4
1,823,186 + -0.6
1,823,289 + ABZR86_RS08180 0.14 +0.2
1,823,290 - ABZR86_RS08180 0.14 -0.2
1,823,888 + ABZR86_RS08185 0.11 -0.3
1,823,888 + ABZR86_RS08185 0.11 -0.8
1,823,888 + ABZR86_RS08185 0.11 -1.0
1,823,888 + ABZR86_RS08185 0.11 -0.5
1,823,889 - ABZR86_RS08185 0.11 -0.3
1,823,976 - ABZR86_RS08185 0.23 +0.3
1,824,036 - ABZR86_RS08185 0.32 -0.2
1,824,036 - ABZR86_RS08185 0.32 +0.4
1,824,232 + ABZR86_RS08185 0.60 -0.1
1,824,232 + ABZR86_RS08185 0.60 -0.2
1,824,232 + ABZR86_RS08185 0.60 -0.1
1,824,232 + ABZR86_RS08185 0.60 -0.3
1,824,232 + ABZR86_RS08185 0.60 +0.7
1,824,233 - ABZR86_RS08185 0.60 +0.3
1,824,366 - ABZR86_RS08185 0.79 +0.5
1,824,502 + +0.6
1,824,503 - -0.1
1,824,503 - -0.0
1,824,520 - +0.7
1,824,575 - +2.3
1,824,592 - -0.3

Or see this region's nucleotide sequence