Experiment: A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS08130 and ABZR86_RS08135 are separated by 355 nucleotides ABZR86_RS08135 and ABZR86_RS08140 are separated by 78 nucleotides
ABZR86_RS08130: ABZR86_RS08130 - dCTP deaminase, at 1,813,575 to 1,814,141
_RS08130
ABZR86_RS08135: ABZR86_RS08135 - hypothetical protein, at 1,814,497 to 1,815,096
_RS08135
ABZR86_RS08140: ABZR86_RS08140 - iron-sulfur cluster carrier protein ApbC, at 1,815,175 to 1,816,269
_RS08140
Position (kb) 1814
1815
1816 Strain fitness (log2 ratio) -2
-1
0
1 at 1813.500 kb on + strand at 1813.500 kb on + strand at 1813.501 kb on - strand at 1813.501 kb on - strand at 1813.612 kb on + strand at 1813.612 kb on + strand at 1813.612 kb on + strand at 1813.613 kb on - strand at 1813.613 kb on - strand at 1813.613 kb on - strand at 1813.696 kb on + strand, within ABZR86_RS08130 at 1813.696 kb on + strand, within ABZR86_RS08130 at 1813.697 kb on - strand, within ABZR86_RS08130 at 1813.697 kb on - strand, within ABZR86_RS08130 at 1813.801 kb on + strand, within ABZR86_RS08130 at 1813.801 kb on + strand, within ABZR86_RS08130 at 1813.802 kb on - strand, within ABZR86_RS08130 at 1813.802 kb on - strand, within ABZR86_RS08130 at 1813.852 kb on + strand, within ABZR86_RS08130 at 1813.853 kb on - strand, within ABZR86_RS08130 at 1813.853 kb on - strand, within ABZR86_RS08130 at 1813.853 kb on - strand, within ABZR86_RS08130 at 1813.967 kb on + strand, within ABZR86_RS08130 at 1813.967 kb on + strand, within ABZR86_RS08130 at 1813.967 kb on + strand, within ABZR86_RS08130 at 1813.968 kb on - strand, within ABZR86_RS08130 at 1813.968 kb on - strand, within ABZR86_RS08130 at 1814.009 kb on - strand, within ABZR86_RS08130 at 1814.014 kb on + strand, within ABZR86_RS08130 at 1814.015 kb on - strand, within ABZR86_RS08130 at 1814.029 kb on + strand, within ABZR86_RS08130 at 1814.029 kb on + strand, within ABZR86_RS08130 at 1814.030 kb on - strand, within ABZR86_RS08130 at 1814.077 kb on + strand, within ABZR86_RS08130 at 1814.077 kb on + strand, within ABZR86_RS08130 at 1814.077 kb on + strand, within ABZR86_RS08130 at 1814.078 kb on - strand, within ABZR86_RS08130 at 1814.078 kb on - strand, within ABZR86_RS08130 at 1814.207 kb on + strand at 1814.207 kb on + strand at 1814.397 kb on + strand at 1814.800 kb on + strand, within ABZR86_RS08135 at 1815.095 kb on - strand at 1815.157 kb on + strand at 1815.157 kb on + strand at 1815.158 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.01 mg/ml remove 1,813,500 + -0.1 1,813,500 + +0.4 1,813,501 - -0.4 1,813,501 - +0.2 1,813,612 + +0.8 1,813,612 + +0.0 1,813,612 + +0.1 1,813,613 - -1.0 1,813,613 - -0.3 1,813,613 - -0.1 1,813,696 + ABZR86_RS08130 0.21 -1.0 1,813,696 + ABZR86_RS08130 0.21 -0.1 1,813,697 - ABZR86_RS08130 0.22 -1.0 1,813,697 - ABZR86_RS08130 0.22 -0.2 1,813,801 + ABZR86_RS08130 0.40 -0.5 1,813,801 + ABZR86_RS08130 0.40 -0.1 1,813,802 - ABZR86_RS08130 0.40 -1.1 1,813,802 - ABZR86_RS08130 0.40 +0.6 1,813,852 + ABZR86_RS08130 0.49 -0.4 1,813,853 - ABZR86_RS08130 0.49 -0.7 1,813,853 - ABZR86_RS08130 0.49 -0.6 1,813,853 - ABZR86_RS08130 0.49 -0.1 1,813,967 + ABZR86_RS08130 0.69 +0.7 1,813,967 + ABZR86_RS08130 0.69 -0.4 1,813,967 + ABZR86_RS08130 0.69 -0.5 1,813,968 - ABZR86_RS08130 0.69 +0.4 1,813,968 - ABZR86_RS08130 0.69 -1.1 1,814,009 - ABZR86_RS08130 0.77 -0.2 1,814,014 + ABZR86_RS08130 0.77 +1.2 1,814,015 - ABZR86_RS08130 0.78 -1.8 1,814,029 + ABZR86_RS08130 0.80 +0.7 1,814,029 + ABZR86_RS08130 0.80 +0.0 1,814,030 - ABZR86_RS08130 0.80 -0.2 1,814,077 + ABZR86_RS08130 0.89 +1.6 1,814,077 + ABZR86_RS08130 0.89 +0.0 1,814,077 + ABZR86_RS08130 0.89 -1.4 1,814,078 - ABZR86_RS08130 0.89 -1.5 1,814,078 - ABZR86_RS08130 0.89 -0.4 1,814,207 + +0.3 1,814,207 + -0.3 1,814,397 + +0.0 1,814,800 + ABZR86_RS08135 0.51 -0.2 1,815,095 - -0.7 1,815,157 + -0.9 1,815,157 + -0.3 1,815,158 - -0.6
Or see this region's nucleotide sequence