Experiment: A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS06565 and ABZR86_RS06570 are separated by 85 nucleotides ABZR86_RS06570 and ABZR86_RS06575 are separated by 10 nucleotides ABZR86_RS06575 and ABZR86_RS06580 are separated by 16 nucleotides ABZR86_RS06580 and ABZR86_RS06585 are separated by 67 nucleotides ABZR86_RS06585 and ABZR86_RS06590 are separated by 17 nucleotides
ABZR86_RS06565: ABZR86_RS06565 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE, at 1,450,074 to 1,450,724
_RS06565
ABZR86_RS06570: ABZR86_RS06570 - ribosome assembly RNA-binding protein YhbY, at 1,450,810 to 1,451,106
_RS06570
ABZR86_RS06575: ABZR86_RS06575 - Mth938-like domain-containing protein, at 1,451,117 to 1,451,497
_RS06575
ABZR86_RS06580: ABZR86_RS06580 - peptidoglycan DD-metalloendopeptidase family protein, at 1,451,514 to 1,452,515
_RS06580
ABZR86_RS06585: ABZR86_RS06585 - YqaA family protein, at 1,452,583 to 1,453,191
_RS06585
ABZR86_RS06590: ABZR86_RS06590 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 1,453,209 to 1,453,889
_RS06590
Position (kb) 1451
1452
1453 Strain fitness (log2 ratio) -2
-1
0
1 at 1450.670 kb on - strand at 1450.768 kb on + strand at 1450.768 kb on + strand at 1450.837 kb on + strand at 1451.049 kb on + strand, within ABZR86_RS06570 at 1451.049 kb on + strand, within ABZR86_RS06570 at 1451.050 kb on - strand, within ABZR86_RS06570 at 1451.147 kb on + strand at 1451.147 kb on + strand at 1451.147 kb on + strand at 1451.148 kb on - strand at 1451.148 kb on - strand at 1451.187 kb on + strand, within ABZR86_RS06575 at 1451.187 kb on + strand, within ABZR86_RS06575 at 1451.187 kb on + strand, within ABZR86_RS06575 at 1451.187 kb on + strand, within ABZR86_RS06575 at 1451.187 kb on + strand, within ABZR86_RS06575 at 1451.188 kb on - strand, within ABZR86_RS06575 at 1451.368 kb on - strand, within ABZR86_RS06575 at 1451.432 kb on + strand, within ABZR86_RS06575 at 1451.432 kb on + strand, within ABZR86_RS06575 at 1451.433 kb on - strand, within ABZR86_RS06575 at 1451.433 kb on - strand, within ABZR86_RS06575 at 1451.433 kb on - strand, within ABZR86_RS06575 at 1451.678 kb on - strand, within ABZR86_RS06580 at 1451.749 kb on + strand, within ABZR86_RS06580 at 1451.750 kb on - strand, within ABZR86_RS06580 at 1451.877 kb on - strand, within ABZR86_RS06580 at 1451.877 kb on - strand, within ABZR86_RS06580 at 1452.256 kb on + strand, within ABZR86_RS06580 at 1452.526 kb on + strand at 1452.527 kb on - strand at 1452.537 kb on - strand at 1452.537 kb on - strand at 1452.550 kb on + strand at 1452.578 kb on + strand at 1453.012 kb on + strand, within ABZR86_RS06585 at 1453.125 kb on - strand, within ABZR86_RS06585 at 1453.125 kb on - strand, within ABZR86_RS06585 at 1453.125 kb on - strand, within ABZR86_RS06585 at 1453.125 kb on - strand, within ABZR86_RS06585 at 1453.125 kb on - strand, within ABZR86_RS06585 at 1453.128 kb on - strand, within ABZR86_RS06585 at 1453.170 kb on - strand at 1453.203 kb on - strand at 1453.203 kb on - strand at 1453.203 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.01 mg/ml remove 1,450,670 - +0.6 1,450,768 + +0.2 1,450,768 + +0.0 1,450,837 + -0.2 1,451,049 + ABZR86_RS06570 0.80 +0.3 1,451,049 + ABZR86_RS06570 0.80 +0.2 1,451,050 - ABZR86_RS06570 0.81 -0.4 1,451,147 + -1.4 1,451,147 + +0.4 1,451,147 + +0.2 1,451,148 - -0.4 1,451,148 - -1.2 1,451,187 + ABZR86_RS06575 0.18 +0.3 1,451,187 + ABZR86_RS06575 0.18 -2.2 1,451,187 + ABZR86_RS06575 0.18 -1.7 1,451,187 + ABZR86_RS06575 0.18 -1.9 1,451,187 + ABZR86_RS06575 0.18 -0.5 1,451,188 - ABZR86_RS06575 0.19 -0.8 1,451,368 - ABZR86_RS06575 0.66 -0.4 1,451,432 + ABZR86_RS06575 0.83 -0.2 1,451,432 + ABZR86_RS06575 0.83 -1.2 1,451,433 - ABZR86_RS06575 0.83 -0.9 1,451,433 - ABZR86_RS06575 0.83 -1.3 1,451,433 - ABZR86_RS06575 0.83 +0.6 1,451,678 - ABZR86_RS06580 0.16 -1.4 1,451,749 + ABZR86_RS06580 0.23 -0.7 1,451,750 - ABZR86_RS06580 0.24 -1.8 1,451,877 - ABZR86_RS06580 0.36 -1.3 1,451,877 - ABZR86_RS06580 0.36 -0.3 1,452,256 + ABZR86_RS06580 0.74 -0.3 1,452,526 + +0.6 1,452,527 - +0.2 1,452,537 - +0.9 1,452,537 - -0.9 1,452,550 + -0.3 1,452,578 + +0.3 1,453,012 + ABZR86_RS06585 0.70 +0.1 1,453,125 - ABZR86_RS06585 0.89 -0.3 1,453,125 - ABZR86_RS06585 0.89 -0.9 1,453,125 - ABZR86_RS06585 0.89 +1.7 1,453,125 - ABZR86_RS06585 0.89 -0.1 1,453,125 - ABZR86_RS06585 0.89 -2.7 1,453,128 - ABZR86_RS06585 0.89 -0.1 1,453,170 - +0.3 1,453,203 - +1.4 1,453,203 - +0.6 1,453,203 - -0.2
Or see this region's nucleotide sequence