Experiment: A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS02535 and ABZR86_RS02540 overlap by 4 nucleotides ABZR86_RS02540 and ABZR86_RS02545 overlap by 4 nucleotides ABZR86_RS02545 and ABZR86_RS02550 overlap by 4 nucleotides ABZR86_RS02550 and ABZR86_RS02555 are separated by 215 nucleotides ABZR86_RS02555 and ABZR86_RS02560 overlap by 4 nucleotides
ABZR86_RS02535: ABZR86_RS02535 - hypothetical protein, at 518,792 to 519,040
_RS02535
ABZR86_RS02540: ABZR86_RS02540 - hypothetical protein, at 519,037 to 519,300
_RS02540
ABZR86_RS02545: ABZR86_RS02545 - Ref family recombination enhancement nuclease, at 519,297 to 519,848
_RS02545
ABZR86_RS02550: ABZR86_RS02550 - hypothetical protein, at 519,845 to 520,516
_RS02550
ABZR86_RS02555: ABZR86_RS02555 - hypothetical protein, at 520,732 to 520,923
_RS02555
ABZR86_RS02560: ABZR86_RS02560 - lysozyme, at 520,920 to 521,390
_RS02560
Position (kb) 519
520
521 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 518.982 kb on + strand, within ABZR86_RS02535 at 518.982 kb on + strand, within ABZR86_RS02535 at 518.982 kb on + strand, within ABZR86_RS02535 at 518.982 kb on + strand, within ABZR86_RS02535 at 518.982 kb on + strand, within ABZR86_RS02535 at 518.983 kb on - strand, within ABZR86_RS02535 at 519.101 kb on + strand, within ABZR86_RS02540 at 519.139 kb on + strand, within ABZR86_RS02540 at 519.139 kb on + strand, within ABZR86_RS02540 at 519.139 kb on + strand, within ABZR86_RS02540 at 519.139 kb on + strand, within ABZR86_RS02540 at 519.139 kb on + strand, within ABZR86_RS02540 at 519.140 kb on - strand, within ABZR86_RS02540 at 519.140 kb on - strand, within ABZR86_RS02540 at 519.140 kb on - strand, within ABZR86_RS02540 at 519.140 kb on - strand, within ABZR86_RS02540 at 519.150 kb on + strand, within ABZR86_RS02540 at 519.151 kb on - strand, within ABZR86_RS02540 at 519.253 kb on + strand, within ABZR86_RS02540 at 519.254 kb on - strand, within ABZR86_RS02540 at 519.254 kb on - strand, within ABZR86_RS02540 at 519.254 kb on - strand, within ABZR86_RS02540 at 519.254 kb on - strand, within ABZR86_RS02540 at 519.254 kb on - strand, within ABZR86_RS02540 at 519.366 kb on - strand, within ABZR86_RS02545 at 519.509 kb on + strand, within ABZR86_RS02545 at 519.558 kb on + strand, within ABZR86_RS02545 at 519.705 kb on + strand, within ABZR86_RS02545 at 519.706 kb on - strand, within ABZR86_RS02545 at 519.717 kb on + strand, within ABZR86_RS02545 at 519.717 kb on + strand, within ABZR86_RS02545 at 519.718 kb on - strand, within ABZR86_RS02545 at 519.750 kb on + strand, within ABZR86_RS02545 at 519.750 kb on + strand, within ABZR86_RS02545 at 519.750 kb on + strand, within ABZR86_RS02545 at 519.750 kb on + strand, within ABZR86_RS02545 at 519.751 kb on - strand, within ABZR86_RS02545 at 519.751 kb on - strand, within ABZR86_RS02545 at 519.778 kb on - strand, within ABZR86_RS02545 at 519.791 kb on + strand, within ABZR86_RS02545 at 519.791 kb on + strand, within ABZR86_RS02545 at 519.792 kb on - strand, within ABZR86_RS02545 at 519.793 kb on + strand at 519.794 kb on - strand at 519.794 kb on - strand at 519.794 kb on - strand at 519.894 kb on - strand at 519.894 kb on - strand at 520.094 kb on + strand, within ABZR86_RS02550 at 520.094 kb on + strand, within ABZR86_RS02550 at 520.094 kb on + strand, within ABZR86_RS02550 at 520.095 kb on - strand, within ABZR86_RS02550 at 520.095 kb on - strand, within ABZR86_RS02550 at 520.161 kb on - strand, within ABZR86_RS02550 at 520.174 kb on + strand, within ABZR86_RS02550 at 520.233 kb on - strand, within ABZR86_RS02550 at 520.233 kb on - strand, within ABZR86_RS02550 at 520.233 kb on - strand, within ABZR86_RS02550 at 520.233 kb on - strand, within ABZR86_RS02550 at 520.254 kb on + strand, within ABZR86_RS02550 at 520.255 kb on - strand, within ABZR86_RS02550 at 520.442 kb on + strand, within ABZR86_RS02550 at 520.442 kb on + strand, within ABZR86_RS02550 at 520.443 kb on - strand, within ABZR86_RS02550 at 520.443 kb on - strand, within ABZR86_RS02550 at 520.514 kb on + strand at 520.534 kb on + strand at 520.534 kb on + strand at 520.540 kb on + strand at 520.540 kb on + strand at 520.540 kb on + strand at 520.541 kb on - strand at 520.548 kb on + strand at 520.548 kb on + strand at 520.659 kb on + strand at 520.659 kb on + strand at 520.659 kb on + strand at 520.667 kb on + strand at 520.710 kb on + strand at 520.711 kb on - strand at 520.843 kb on + strand, within ABZR86_RS02555 at 520.843 kb on + strand, within ABZR86_RS02555 at 520.844 kb on - strand, within ABZR86_RS02555 at 520.844 kb on - strand, within ABZR86_RS02555 at 520.844 kb on - strand, within ABZR86_RS02555 at 520.942 kb on + strand at 520.942 kb on + strand at 520.943 kb on - strand at 521.091 kb on + strand, within ABZR86_RS02560 at 521.092 kb on - strand, within ABZR86_RS02560 at 521.116 kb on + strand, within ABZR86_RS02560 at 521.116 kb on + strand, within ABZR86_RS02560 at 521.117 kb on - strand, within ABZR86_RS02560 at 521.117 kb on - strand, within ABZR86_RS02560 at 521.313 kb on + strand, within ABZR86_RS02560 at 521.313 kb on + strand, within ABZR86_RS02560 at 521.372 kb on - strand at 521.438 kb on + strand at 521.439 kb on - strand at 521.439 kb on - strand at 521.478 kb on + strand at 521.478 kb on + strand at 521.479 kb on - strand at 521.479 kb on - strand at 521.494 kb on + strand at 521.495 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.01 mg/ml remove 518,982 + ABZR86_RS02535 0.76 -0.4 518,982 + ABZR86_RS02535 0.76 -0.7 518,982 + ABZR86_RS02535 0.76 +0.3 518,982 + ABZR86_RS02535 0.76 +0.6 518,982 + ABZR86_RS02535 0.76 -0.2 518,983 - ABZR86_RS02535 0.77 +0.1 519,101 + ABZR86_RS02540 0.24 -0.6 519,139 + ABZR86_RS02540 0.39 +0.1 519,139 + ABZR86_RS02540 0.39 +0.1 519,139 + ABZR86_RS02540 0.39 -0.2 519,139 + ABZR86_RS02540 0.39 +0.8 519,139 + ABZR86_RS02540 0.39 +0.6 519,140 - ABZR86_RS02540 0.39 +0.6 519,140 - ABZR86_RS02540 0.39 +1.7 519,140 - ABZR86_RS02540 0.39 -0.4 519,140 - ABZR86_RS02540 0.39 +0.1 519,150 + ABZR86_RS02540 0.43 +0.2 519,151 - ABZR86_RS02540 0.43 +1.1 519,253 + ABZR86_RS02540 0.82 +0.5 519,254 - ABZR86_RS02540 0.82 -0.4 519,254 - ABZR86_RS02540 0.82 +0.1 519,254 - ABZR86_RS02540 0.82 +0.8 519,254 - ABZR86_RS02540 0.82 +0.4 519,254 - ABZR86_RS02540 0.82 +0.0 519,366 - ABZR86_RS02545 0.12 -0.2 519,509 + ABZR86_RS02545 0.38 -0.2 519,558 + ABZR86_RS02545 0.47 +1.0 519,705 + ABZR86_RS02545 0.74 -1.3 519,706 - ABZR86_RS02545 0.74 -0.7 519,717 + ABZR86_RS02545 0.76 +0.1 519,717 + ABZR86_RS02545 0.76 -0.1 519,718 - ABZR86_RS02545 0.76 -0.7 519,750 + ABZR86_RS02545 0.82 -1.5 519,750 + ABZR86_RS02545 0.82 -0.7 519,750 + ABZR86_RS02545 0.82 -0.1 519,750 + ABZR86_RS02545 0.82 -3.3 519,751 - ABZR86_RS02545 0.82 +0.5 519,751 - ABZR86_RS02545 0.82 +0.4 519,778 - ABZR86_RS02545 0.87 -0.1 519,791 + ABZR86_RS02545 0.89 +0.1 519,791 + ABZR86_RS02545 0.89 +0.0 519,792 - ABZR86_RS02545 0.90 +0.5 519,793 + -0.6 519,794 - -0.1 519,794 - +0.2 519,794 - -0.6 519,894 - +0.4 519,894 - +0.2 520,094 + ABZR86_RS02550 0.37 +0.9 520,094 + ABZR86_RS02550 0.37 +0.2 520,094 + ABZR86_RS02550 0.37 +0.2 520,095 - ABZR86_RS02550 0.37 -0.7 520,095 - ABZR86_RS02550 0.37 -0.1 520,161 - ABZR86_RS02550 0.47 +0.1 520,174 + ABZR86_RS02550 0.49 -0.5 520,233 - ABZR86_RS02550 0.58 -0.3 520,233 - ABZR86_RS02550 0.58 +0.9 520,233 - ABZR86_RS02550 0.58 -0.2 520,233 - ABZR86_RS02550 0.58 -1.1 520,254 + ABZR86_RS02550 0.61 +0.1 520,255 - ABZR86_RS02550 0.61 +0.8 520,442 + ABZR86_RS02550 0.89 +0.3 520,442 + ABZR86_RS02550 0.89 +0.1 520,443 - ABZR86_RS02550 0.89 -0.2 520,443 - ABZR86_RS02550 0.89 -2.1 520,514 + -0.3 520,534 + +0.9 520,534 + -0.2 520,540 + -0.1 520,540 + +0.5 520,540 + +0.4 520,541 - -0.8 520,548 + -0.2 520,548 + -0.4 520,659 + -0.9 520,659 + -0.1 520,659 + -0.5 520,667 + -0.4 520,710 + -0.1 520,711 - +1.1 520,843 + ABZR86_RS02555 0.58 -0.1 520,843 + ABZR86_RS02555 0.58 -0.9 520,844 - ABZR86_RS02555 0.58 +0.4 520,844 - ABZR86_RS02555 0.58 -0.5 520,844 - ABZR86_RS02555 0.58 -1.0 520,942 + -0.2 520,942 + -0.8 520,943 - +0.3 521,091 + ABZR86_RS02560 0.36 -1.1 521,092 - ABZR86_RS02560 0.37 +0.1 521,116 + ABZR86_RS02560 0.42 +0.1 521,116 + ABZR86_RS02560 0.42 -0.2 521,117 - ABZR86_RS02560 0.42 -0.5 521,117 - ABZR86_RS02560 0.42 -0.9 521,313 + ABZR86_RS02560 0.83 -0.4 521,313 + ABZR86_RS02560 0.83 -0.2 521,372 - -0.0 521,438 + -0.3 521,439 - +0.2 521,439 - +0.2 521,478 + -0.2 521,478 + +0.4 521,479 - +0.0 521,479 - +2.1 521,494 + +0.3 521,495 - -0.5
Or see this region's nucleotide sequence