Experiment: A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS02485 and ABZR86_RS02490 overlap by 4 nucleotides ABZR86_RS02490 and ABZR86_RS02495 overlap by 4 nucleotides ABZR86_RS02495 and ABZR86_RS02500 overlap by 4 nucleotides ABZR86_RS02500 and ABZR86_RS02505 are separated by 49 nucleotides ABZR86_RS02505 and ABZR86_RS02510 are separated by 8 nucleotides
ABZR86_RS02485: ABZR86_RS02485 - ATP-binding protein, at 511,108 to 511,869
_RS02485
ABZR86_RS02490: ABZR86_RS02490 - helix-turn-helix domain-containing protein, at 511,866 to 512,372
_RS02490
ABZR86_RS02495: ABZR86_RS02495 - hypothetical protein, at 512,369 to 512,578
_RS02495
ABZR86_RS02500: ABZR86_RS02500 - hypothetical protein, at 512,575 to 512,877
_RS02500
ABZR86_RS02505: ABZR86_RS02505 - hypothetical protein, at 512,927 to 513,382
_RS02505
ABZR86_RS02510: ABZR86_RS02510 - DNA cytosine methyltransferase, at 513,391 to 515,451
_RS02510
Position (kb) 512
513 Strain fitness (log2 ratio) -1
0
1
2 at 511.862 kb on + strand at 511.863 kb on - strand at 512.055 kb on + strand, within ABZR86_RS02490 at 512.055 kb on + strand, within ABZR86_RS02490 at 512.055 kb on + strand, within ABZR86_RS02490 at 512.055 kb on + strand, within ABZR86_RS02490 at 512.055 kb on + strand, within ABZR86_RS02490 at 512.055 kb on + strand, within ABZR86_RS02490 at 512.055 kb on + strand, within ABZR86_RS02490 at 512.056 kb on - strand, within ABZR86_RS02490 at 512.056 kb on - strand, within ABZR86_RS02490 at 512.112 kb on + strand, within ABZR86_RS02490 at 512.113 kb on - strand, within ABZR86_RS02490 at 512.220 kb on + strand, within ABZR86_RS02490 at 512.221 kb on - strand, within ABZR86_RS02490 at 512.221 kb on - strand, within ABZR86_RS02490 at 512.316 kb on - strand, within ABZR86_RS02490 at 512.773 kb on + strand, within ABZR86_RS02500 at 512.861 kb on - strand at 513.050 kb on + strand, within ABZR86_RS02505 at 513.214 kb on - strand, within ABZR86_RS02505 at 513.313 kb on - strand, within ABZR86_RS02505 at 513.691 kb on - strand, within ABZR86_RS02510 at 513.691 kb on - strand, within ABZR86_RS02510
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.01 mg/ml remove 511,862 + -0.3 511,863 - +0.8 512,055 + ABZR86_RS02490 0.37 +0.5 512,055 + ABZR86_RS02490 0.37 +0.9 512,055 + ABZR86_RS02490 0.37 -0.1 512,055 + ABZR86_RS02490 0.37 -0.3 512,055 + ABZR86_RS02490 0.37 +0.2 512,055 + ABZR86_RS02490 0.37 +0.7 512,055 + ABZR86_RS02490 0.37 +0.7 512,056 - ABZR86_RS02490 0.37 -0.4 512,056 - ABZR86_RS02490 0.37 -0.3 512,112 + ABZR86_RS02490 0.49 -0.6 512,113 - ABZR86_RS02490 0.49 -0.4 512,220 + ABZR86_RS02490 0.70 +0.5 512,221 - ABZR86_RS02490 0.70 +1.8 512,221 - ABZR86_RS02490 0.70 +0.2 512,316 - ABZR86_RS02490 0.89 -0.6 512,773 + ABZR86_RS02500 0.65 -0.7 512,861 - -0.4 513,050 + ABZR86_RS02505 0.27 +0.9 513,214 - ABZR86_RS02505 0.63 +0.0 513,313 - ABZR86_RS02505 0.85 +0.1 513,691 - ABZR86_RS02510 0.15 -0.3 513,691 - ABZR86_RS02510 0.15 -1.1
Or see this region's nucleotide sequence