Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS00185

Experiment: A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS00180 and ABZR86_RS00185 are separated by 53 nucleotidesABZR86_RS00185 and ABZR86_RS00190 are separated by 120 nucleotidesABZR86_RS00190 and ABZR86_RS00195 are separated by 66 nucleotidesABZR86_RS00195 and ABZR86_RS00200 are separated by 99 nucleotides ABZR86_RS00180: ABZR86_RS00180 - creatininase family protein, at 33,980 to 34,795 _RS00180 ABZR86_RS00185: ABZR86_RS00185 - beta-propeller fold lactonase family protein, at 34,849 to 36,033 _RS00185 ABZR86_RS00190: ABZR86_RS00190 - GIY-YIG nuclease family protein, at 36,154 to 36,411 _RS00190 ABZR86_RS00195: ABZR86_RS00195 - zinc ribbon domain-containing protein YjdM, at 36,478 to 36,819 _RS00195 ABZR86_RS00200: ABZR86_RS00200 - hypothetical protein, at 36,919 to 37,287 _RS00200 Position (kb) 34 35 36 37Strain fitness (log2 ratio) -1 0 1at 33.940 kb on + strandat 33.940 kb on + strandat 33.940 kb on + strandat 33.941 kb on - strandat 33.941 kb on - strandat 33.958 kb on + strandat 33.959 kb on - strandat 34.262 kb on + strand, within ABZR86_RS00180at 34.262 kb on + strand, within ABZR86_RS00180at 34.262 kb on + strand, within ABZR86_RS00180at 34.262 kb on + strand, within ABZR86_RS00180at 34.262 kb on + strand, within ABZR86_RS00180at 34.263 kb on - strand, within ABZR86_RS00180at 34.263 kb on - strand, within ABZR86_RS00180at 34.263 kb on - strand, within ABZR86_RS00180at 34.263 kb on - strand, within ABZR86_RS00180at 34.300 kb on + strand, within ABZR86_RS00180at 34.300 kb on + strand, within ABZR86_RS00180at 34.300 kb on + strand, within ABZR86_RS00180at 34.318 kb on + strand, within ABZR86_RS00180at 34.509 kb on - strand, within ABZR86_RS00180at 34.509 kb on - strand, within ABZR86_RS00180at 34.511 kb on + strand, within ABZR86_RS00180at 34.512 kb on - strand, within ABZR86_RS00180at 34.512 kb on - strand, within ABZR86_RS00180at 34.532 kb on + strand, within ABZR86_RS00180at 34.744 kb on + strandat 34.990 kb on + strand, within ABZR86_RS00185at 34.990 kb on + strand, within ABZR86_RS00185at 34.990 kb on + strand, within ABZR86_RS00185at 34.990 kb on + strand, within ABZR86_RS00185at 34.990 kb on + strand, within ABZR86_RS00185at 34.991 kb on - strand, within ABZR86_RS00185at 34.991 kb on - strand, within ABZR86_RS00185at 35.050 kb on + strand, within ABZR86_RS00185at 35.051 kb on - strand, within ABZR86_RS00185at 35.101 kb on + strand, within ABZR86_RS00185at 35.101 kb on + strand, within ABZR86_RS00185at 35.101 kb on + strand, within ABZR86_RS00185at 35.102 kb on - strand, within ABZR86_RS00185at 35.102 kb on - strand, within ABZR86_RS00185at 35.102 kb on - strand, within ABZR86_RS00185at 35.276 kb on - strand, within ABZR86_RS00185at 35.284 kb on + strand, within ABZR86_RS00185at 35.284 kb on + strand, within ABZR86_RS00185at 35.284 kb on + strand, within ABZR86_RS00185at 35.285 kb on - strand, within ABZR86_RS00185at 35.285 kb on - strand, within ABZR86_RS00185at 35.285 kb on - strand, within ABZR86_RS00185at 35.316 kb on - strand, within ABZR86_RS00185at 35.438 kb on - strand, within ABZR86_RS00185at 35.509 kb on + strand, within ABZR86_RS00185at 35.575 kb on + strand, within ABZR86_RS00185at 35.575 kb on + strand, within ABZR86_RS00185at 35.576 kb on - strand, within ABZR86_RS00185at 35.702 kb on - strand, within ABZR86_RS00185at 35.912 kb on - strand, within ABZR86_RS00185at 35.912 kb on - strand, within ABZR86_RS00185at 35.912 kb on - strand, within ABZR86_RS00185at 36.001 kb on + strandat 36.135 kb on + strandat 36.135 kb on + strandat 36.136 kb on - strandat 36.136 kb on - strandat 36.282 kb on + strand, within ABZR86_RS00190at 36.282 kb on + strand, within ABZR86_RS00190at 36.285 kb on - strand, within ABZR86_RS00190at 36.285 kb on - strand, within ABZR86_RS00190at 36.351 kb on - strand, within ABZR86_RS00190at 36.351 kb on - strand, within ABZR86_RS00190at 36.353 kb on + strand, within ABZR86_RS00190at 36.353 kb on + strand, within ABZR86_RS00190at 36.354 kb on - strand, within ABZR86_RS00190at 36.354 kb on - strand, within ABZR86_RS00190at 36.354 kb on - strand, within ABZR86_RS00190at 36.381 kb on - strand, within ABZR86_RS00190at 36.441 kb on + strandat 36.443 kb on + strandat 36.444 kb on - strandat 36.524 kb on - strand, within ABZR86_RS00195at 36.541 kb on + strand, within ABZR86_RS00195at 36.541 kb on + strand, within ABZR86_RS00195at 36.542 kb on - strand, within ABZR86_RS00195at 36.542 kb on - strand, within ABZR86_RS00195at 36.542 kb on - strand, within ABZR86_RS00195at 36.542 kb on - strand, within ABZR86_RS00195at 36.542 kb on - strand, within ABZR86_RS00195at 36.542 kb on - strand, within ABZR86_RS00195at 36.542 kb on - strand, within ABZR86_RS00195at 36.542 kb on - strand, within ABZR86_RS00195at 36.542 kb on - strand, within ABZR86_RS00195at 36.542 kb on - strand, within ABZR86_RS00195

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.01 mg/ml
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33,940 + +0.4
33,940 + +0.2
33,940 + -0.0
33,941 - -0.9
33,941 - -0.4
33,958 + -0.9
33,959 - +0.6
34,262 + ABZR86_RS00180 0.35 -0.0
34,262 + ABZR86_RS00180 0.35 +0.6
34,262 + ABZR86_RS00180 0.35 +1.2
34,262 + ABZR86_RS00180 0.35 +0.7
34,262 + ABZR86_RS00180 0.35 +0.5
34,263 - ABZR86_RS00180 0.35 -0.6
34,263 - ABZR86_RS00180 0.35 +0.6
34,263 - ABZR86_RS00180 0.35 -0.1
34,263 - ABZR86_RS00180 0.35 -0.7
34,300 + ABZR86_RS00180 0.39 -0.5
34,300 + ABZR86_RS00180 0.39 +0.1
34,300 + ABZR86_RS00180 0.39 +0.7
34,318 + ABZR86_RS00180 0.41 -0.3
34,509 - ABZR86_RS00180 0.65 +0.2
34,509 - ABZR86_RS00180 0.65 +0.0
34,511 + ABZR86_RS00180 0.65 +0.7
34,512 - ABZR86_RS00180 0.65 +0.6
34,512 - ABZR86_RS00180 0.65 +0.9
34,532 + ABZR86_RS00180 0.68 +0.5
34,744 + +0.2
34,990 + ABZR86_RS00185 0.12 -1.3
34,990 + ABZR86_RS00185 0.12 -0.2
34,990 + ABZR86_RS00185 0.12 +0.6
34,990 + ABZR86_RS00185 0.12 +0.3
34,990 + ABZR86_RS00185 0.12 -0.1
34,991 - ABZR86_RS00185 0.12 -0.1
34,991 - ABZR86_RS00185 0.12 +0.4
35,050 + ABZR86_RS00185 0.17 -0.0
35,051 - ABZR86_RS00185 0.17 +0.1
35,101 + ABZR86_RS00185 0.21 +0.6
35,101 + ABZR86_RS00185 0.21 -0.3
35,101 + ABZR86_RS00185 0.21 -0.2
35,102 - ABZR86_RS00185 0.21 -0.1
35,102 - ABZR86_RS00185 0.21 +0.3
35,102 - ABZR86_RS00185 0.21 +0.5
35,276 - ABZR86_RS00185 0.36 -0.2
35,284 + ABZR86_RS00185 0.37 +0.1
35,284 + ABZR86_RS00185 0.37 +1.0
35,284 + ABZR86_RS00185 0.37 +0.5
35,285 - ABZR86_RS00185 0.37 -0.7
35,285 - ABZR86_RS00185 0.37 +0.4
35,285 - ABZR86_RS00185 0.37 +0.5
35,316 - ABZR86_RS00185 0.39 +1.2
35,438 - ABZR86_RS00185 0.50 +0.3
35,509 + ABZR86_RS00185 0.56 +0.3
35,575 + ABZR86_RS00185 0.61 +0.3
35,575 + ABZR86_RS00185 0.61 -0.2
35,576 - ABZR86_RS00185 0.61 +1.3
35,702 - ABZR86_RS00185 0.72 +0.0
35,912 - ABZR86_RS00185 0.90 +0.9
35,912 - ABZR86_RS00185 0.90 +0.5
35,912 - ABZR86_RS00185 0.90 +0.0
36,001 + -1.0
36,135 + +0.2
36,135 + -0.3
36,136 - -0.1
36,136 - -0.1
36,282 + ABZR86_RS00190 0.50 -0.6
36,282 + ABZR86_RS00190 0.50 +0.3
36,285 - ABZR86_RS00190 0.51 +0.3
36,285 - ABZR86_RS00190 0.51 +0.2
36,351 - ABZR86_RS00190 0.76 +0.8
36,351 - ABZR86_RS00190 0.76 +0.4
36,353 + ABZR86_RS00190 0.77 +0.1
36,353 + ABZR86_RS00190 0.77 +0.1
36,354 - ABZR86_RS00190 0.78 -0.2
36,354 - ABZR86_RS00190 0.78 +0.2
36,354 - ABZR86_RS00190 0.78 +0.6
36,381 - ABZR86_RS00190 0.88 +1.1
36,441 + -0.3
36,443 + +0.6
36,444 - -0.0
36,524 - ABZR86_RS00195 0.13 +0.1
36,541 + ABZR86_RS00195 0.18 -0.6
36,541 + ABZR86_RS00195 0.18 -0.8
36,542 - ABZR86_RS00195 0.19 +0.7
36,542 - ABZR86_RS00195 0.19 +0.3
36,542 - ABZR86_RS00195 0.19 -0.1
36,542 - ABZR86_RS00195 0.19 -0.3
36,542 - ABZR86_RS00195 0.19 +0.1
36,542 - ABZR86_RS00195 0.19 +0.2
36,542 - ABZR86_RS00195 0.19 -0.2
36,542 - ABZR86_RS00195 0.19 -0.5
36,542 - ABZR86_RS00195 0.19 +0.4
36,542 - ABZR86_RS00195 0.19 +0.2

Or see this region's nucleotide sequence