Experiment: A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00110 and ABZR86_RS00115 are separated by 111 nucleotides ABZR86_RS00115 and ABZR86_RS00120 are separated by 135 nucleotides ABZR86_RS00120 and ABZR86_RS00125 are separated by 232 nucleotides
ABZR86_RS00110: ABZR86_RS00110 - DUF4331 family protein, at 19,127 to 20,356
_RS00110
ABZR86_RS00115: ABZR86_RS00115 - DUF1579 domain-containing protein, at 20,468 to 21,037
_RS00115
ABZR86_RS00120: ABZR86_RS00120 - cysteine hydrolase family protein, at 21,173 to 21,712
_RS00120
ABZR86_RS00125: ABZR86_RS00125 - TonB-dependent receptor, at 21,945 to 24,875
_RS00125
Position (kb) 20
21
22 Strain fitness (log2 ratio) -1
0
1
2 at 19.566 kb on + strand, within ABZR86_RS00110 at 19.567 kb on - strand, within ABZR86_RS00110 at 19.567 kb on - strand, within ABZR86_RS00110 at 19.733 kb on + strand, within ABZR86_RS00110 at 19.733 kb on + strand, within ABZR86_RS00110 at 20.133 kb on + strand, within ABZR86_RS00110 at 20.155 kb on + strand, within ABZR86_RS00110 at 20.214 kb on + strand, within ABZR86_RS00110 at 20.214 kb on + strand, within ABZR86_RS00110 at 20.215 kb on - strand, within ABZR86_RS00110 at 20.215 kb on - strand, within ABZR86_RS00110 at 20.215 kb on - strand, within ABZR86_RS00110 at 20.418 kb on - strand at 20.482 kb on - strand at 20.695 kb on - strand, within ABZR86_RS00115 at 20.695 kb on - strand, within ABZR86_RS00115 at 20.751 kb on + strand, within ABZR86_RS00115 at 20.751 kb on + strand, within ABZR86_RS00115 at 20.924 kb on + strand, within ABZR86_RS00115 at 20.925 kb on - strand, within ABZR86_RS00115 at 21.139 kb on + strand at 21.139 kb on + strand at 21.187 kb on - strand at 21.187 kb on - strand at 21.372 kb on + strand, within ABZR86_RS00120 at 21.373 kb on - strand, within ABZR86_RS00120 at 21.373 kb on - strand, within ABZR86_RS00120 at 21.434 kb on + strand, within ABZR86_RS00120 at 21.848 kb on + strand at 21.890 kb on + strand at 21.924 kb on - strand at 21.924 kb on - strand at 21.924 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.01 mg/ml remove 19,566 + ABZR86_RS00110 0.36 -0.0 19,567 - ABZR86_RS00110 0.36 +0.1 19,567 - ABZR86_RS00110 0.36 +0.5 19,733 + ABZR86_RS00110 0.49 +0.3 19,733 + ABZR86_RS00110 0.49 +0.2 20,133 + ABZR86_RS00110 0.82 +0.7 20,155 + ABZR86_RS00110 0.84 +0.2 20,214 + ABZR86_RS00110 0.88 +0.1 20,214 + ABZR86_RS00110 0.88 -0.2 20,215 - ABZR86_RS00110 0.88 +0.2 20,215 - ABZR86_RS00110 0.88 -0.6 20,215 - ABZR86_RS00110 0.88 -1.3 20,418 - -0.1 20,482 - +0.1 20,695 - ABZR86_RS00115 0.40 -1.6 20,695 - ABZR86_RS00115 0.40 -0.8 20,751 + ABZR86_RS00115 0.50 -0.4 20,751 + ABZR86_RS00115 0.50 -0.3 20,924 + ABZR86_RS00115 0.80 -0.1 20,925 - ABZR86_RS00115 0.80 -0.4 21,139 + -1.4 21,139 + -0.3 21,187 - -0.2 21,187 - -0.4 21,372 + ABZR86_RS00120 0.37 -0.7 21,373 - ABZR86_RS00120 0.37 +0.2 21,373 - ABZR86_RS00120 0.37 +0.0 21,434 + ABZR86_RS00120 0.48 +1.9 21,848 + -0.1 21,890 + +0.0 21,924 - -0.4 21,924 - -1.5 21,924 - -0.6
Or see this region's nucleotide sequence