Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3084 and DvMF_3085 are separated by 19 nucleotides DvMF_3085 and DvMF_3086 are separated by 146 nucleotides DvMF_3086 and DvMF_3087 overlap by 4 nucleotides DvMF_3087 and DvMF_3088 are separated by 3 nucleotides
DvMF_3084: DvMF_3084 - ATP-dependent protease La (RefSeq), at 3,895,393 to 3,898,089
_3084
DvMF_3085: DvMF_3085 - acylphosphatase (RefSeq), at 3,898,109 to 3,898,447
_3085
DvMF_3086: DvMF_3086 - DNA repair protein RadC (RefSeq), at 3,898,594 to 3,899,271
_3086
DvMF_3087: DvMF_3087 - hypothetical protein (RefSeq), at 3,899,268 to 3,899,411
_3087
DvMF_3088: DvMF_3088 - hypothetical protein (RefSeq), at 3,899,415 to 3,900,566
_3088
Position (kb)
3898
3899
3900 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3898.366 kb on + strand, within DvMF_3085 at 3898.818 kb on - strand, within DvMF_3086 at 3898.889 kb on + strand, within DvMF_3086 at 3898.957 kb on + strand, within DvMF_3086 at 3898.957 kb on + strand, within DvMF_3086 at 3898.965 kb on - strand, within DvMF_3086 at 3899.043 kb on + strand, within DvMF_3086 at 3899.244 kb on + strand at 3899.341 kb on - strand, within DvMF_3087 at 3899.389 kb on - strand, within DvMF_3087
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 3,898,366 + DvMF_3085 0.76 -0.9 3,898,818 - DvMF_3086 0.33 -1.0 3,898,889 + DvMF_3086 0.44 -1.1 3,898,957 + DvMF_3086 0.54 -1.0 3,898,957 + DvMF_3086 0.54 -1.3 3,898,965 - DvMF_3086 0.55 -0.6 3,899,043 + DvMF_3086 0.66 -3.3 3,899,244 + -0.8 3,899,341 - DvMF_3087 0.51 -0.1 3,899,389 - DvMF_3087 0.84 -0.6
Or see this region's nucleotide sequence