Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3053

Experiment: MoYLS4 with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3052 and DvMF_3053 overlap by 8 nucleotidesDvMF_3053 and DvMF_3054 overlap by 4 nucleotides DvMF_3052: DvMF_3052 - putative molybdenum ABC transporter, solute-binding protein (RefSeq), at 3,853,604 to 3,854,464 _3052 DvMF_3053: DvMF_3053 - 4Fe-4S ferredoxin, iron-sulfur binding domain protein (RefSeq), at 3,854,457 to 3,855,275 _3053 DvMF_3054: DvMF_3054 - Radical SAM domain protein (RefSeq), at 3,855,272 to 3,856,249 _3054 Position (kb) 3854 3855 3856Strain fitness (log2 ratio) -3 -2 -1 0 1at 3853.600 kb on + strandat 3853.733 kb on - strand, within DvMF_3052at 3853.761 kb on - strand, within DvMF_3052at 3853.800 kb on - strand, within DvMF_3052at 3853.811 kb on + strand, within DvMF_3052at 3853.818 kb on - strand, within DvMF_3052at 3853.858 kb on - strand, within DvMF_3052at 3853.866 kb on + strand, within DvMF_3052at 3853.897 kb on - strand, within DvMF_3052at 3854.028 kb on + strand, within DvMF_3052at 3854.505 kb on + strandat 3854.702 kb on + strand, within DvMF_3053at 3854.702 kb on + strand, within DvMF_3053at 3854.702 kb on + strand, within DvMF_3053at 3854.710 kb on - strand, within DvMF_3053at 3854.809 kb on - strand, within DvMF_3053at 3855.109 kb on - strand, within DvMF_3053at 3855.133 kb on - strand, within DvMF_3053at 3855.231 kb on - strandat 3855.378 kb on + strand, within DvMF_3054at 3855.532 kb on + strand, within DvMF_3054at 3855.833 kb on + strand, within DvMF_3054at 3856.109 kb on - strand, within DvMF_3054at 3856.109 kb on - strand, within DvMF_3054at 3856.219 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml
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3,853,600 + -0.5
3,853,733 - DvMF_3052 0.15 -0.6
3,853,761 - DvMF_3052 0.18 -1.7
3,853,800 - DvMF_3052 0.23 -0.9
3,853,811 + DvMF_3052 0.24 -0.6
3,853,818 - DvMF_3052 0.25 -2.8
3,853,858 - DvMF_3052 0.30 -0.5
3,853,866 + DvMF_3052 0.30 -0.3
3,853,897 - DvMF_3052 0.34 -2.5
3,854,028 + DvMF_3052 0.49 -0.5
3,854,505 + -1.2
3,854,702 + DvMF_3053 0.30 -0.5
3,854,702 + DvMF_3053 0.30 -0.6
3,854,702 + DvMF_3053 0.30 -0.5
3,854,710 - DvMF_3053 0.31 +1.2
3,854,809 - DvMF_3053 0.43 -0.4
3,855,109 - DvMF_3053 0.80 -0.5
3,855,133 - DvMF_3053 0.83 -0.4
3,855,231 - -2.0
3,855,378 + DvMF_3054 0.11 -1.0
3,855,532 + DvMF_3054 0.27 -1.1
3,855,833 + DvMF_3054 0.57 -0.6
3,856,109 - DvMF_3054 0.86 -0.9
3,856,109 - DvMF_3054 0.86 -0.8
3,856,219 + -0.3

Or see this region's nucleotide sequence