Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3012

Experiment: MoYLS4 with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3011 and DvMF_3012 are separated by 151 nucleotidesDvMF_3012 and DvMF_3013 overlap by 29 nucleotidesDvMF_3013 and DvMF_3014 are separated by 182 nucleotides DvMF_3011: DvMF_3011 - metal dependent phosphohydrolase (RefSeq), at 3,799,275 to 3,800,411 _3011 DvMF_3012: DvMF_3012 - hypothetical protein (RefSeq), at 3,800,563 to 3,802,239 _3012 DvMF_3013: DvMF_3013 - hypothetical protein (RefSeq), at 3,802,211 to 3,802,933 _3013 DvMF_3014: DvMF_3014 - hypothetical protein (RefSeq), at 3,803,116 to 3,803,847 _3014 Position (kb) 3800 3801 3802 3803Strain fitness (log2 ratio) -1 0 1 2 3 4at 3800.219 kb on - strand, within DvMF_3011at 3800.550 kb on + strandat 3800.791 kb on + strand, within DvMF_3012at 3800.867 kb on + strand, within DvMF_3012at 3801.490 kb on + strand, within DvMF_3012at 3801.679 kb on - strand, within DvMF_3012at 3801.882 kb on + strand, within DvMF_3012at 3801.890 kb on - strand, within DvMF_3012at 3802.557 kb on - strand, within DvMF_3013at 3802.802 kb on + strand, within DvMF_3013at 3802.817 kb on - strand, within DvMF_3013at 3802.956 kb on - strandat 3803.163 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml
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3,800,219 - DvMF_3011 0.83 -0.2
3,800,550 + -0.6
3,800,791 + DvMF_3012 0.14 +2.7
3,800,867 + DvMF_3012 0.18 +2.7
3,801,490 + DvMF_3012 0.55 +2.4
3,801,679 - DvMF_3012 0.67 +2.8
3,801,882 + DvMF_3012 0.79 +2.5
3,801,890 - DvMF_3012 0.79 +1.4
3,802,557 - DvMF_3013 0.48 +2.8
3,802,802 + DvMF_3013 0.82 +3.1
3,802,817 - DvMF_3013 0.84 +4.4
3,802,956 - +0.4
3,803,163 - +0.9

Or see this region's nucleotide sequence