Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2888 and DvMF_2889 are separated by 356 nucleotides DvMF_2889 and DvMF_2890 are separated by 117 nucleotides DvMF_2890 and DvMF_2891 overlap by 11 nucleotides
DvMF_2888: DvMF_2888 - signal recognition particle protein (RefSeq), at 3,643,457 to 3,645,013
_2888
DvMF_2889: DvMF_2889 - aspartate aminotransferase (RefSeq), at 3,645,370 to 3,646,554
_2889
DvMF_2890: DvMF_2890 - hypothetical protein (RefSeq), at 3,646,672 to 3,646,905
_2890
DvMF_2891: DvMF_2891 - 5-enolpyruvylshikimate-3-phosphate synthase-like protein (RefSeq), at 3,646,895 to 3,648,772
_2891
Position (kb)
3645
3646
3647 Strain fitness (log2 ratio)
-2
-1
0
1 at 3645.149 kb on + strand at 3645.187 kb on + strand at 3645.195 kb on - strand at 3645.196 kb on - strand at 3645.617 kb on - strand, within DvMF_2889 at 3645.779 kb on + strand, within DvMF_2889 at 3645.829 kb on + strand, within DvMF_2889 at 3646.171 kb on + strand, within DvMF_2889 at 3646.235 kb on + strand, within DvMF_2889 at 3646.283 kb on + strand, within DvMF_2889 at 3646.283 kb on + strand, within DvMF_2889 at 3646.465 kb on - strand at 3646.979 kb on + strand at 3647.063 kb on - strand at 3647.106 kb on - strand, within DvMF_2891 at 3647.242 kb on - strand, within DvMF_2891 at 3647.442 kb on - strand, within DvMF_2891 at 3647.545 kb on + strand, within DvMF_2891
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 3,645,149 + -0.6 3,645,187 + -1.3 3,645,195 - +0.5 3,645,196 - -0.8 3,645,617 - DvMF_2889 0.21 -0.5 3,645,779 + DvMF_2889 0.35 -1.9 3,645,829 + DvMF_2889 0.39 -0.6 3,646,171 + DvMF_2889 0.68 -1.6 3,646,235 + DvMF_2889 0.73 -1.0 3,646,283 + DvMF_2889 0.77 -1.3 3,646,283 + DvMF_2889 0.77 -0.2 3,646,465 - -0.5 3,646,979 + -1.3 3,647,063 - -0.4 3,647,106 - DvMF_2891 0.11 -2.2 3,647,242 - DvMF_2891 0.18 +1.6 3,647,442 - DvMF_2891 0.29 -2.4 3,647,545 + DvMF_2891 0.35 -1.1
Or see this region's nucleotide sequence