Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2858

Experiment: MoYLS4 with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2856 and DvMF_2857 are separated by 3 nucleotidesDvMF_2857 and DvMF_2858 are separated by 105 nucleotidesDvMF_2858 and DvMF_2859 are separated by 178 nucleotides DvMF_2856: DvMF_2856 - NADPH-dependent FMN reductase (RefSeq), at 3,608,395 to 3,609,027 _2856 DvMF_2857: DvMF_2857 - phosphoribosyltransferase (RefSeq), at 3,609,031 to 3,609,855 _2857 DvMF_2858: DvMF_2858 - short-chain dehydrogenase/reductase SDR (RefSeq), at 3,609,961 to 3,610,698 _2858 DvMF_2859: DvMF_2859 - hypothetical protein (RefSeq), at 3,610,877 to 3,611,665 _2859 Position (kb) 3609 3610 3611Strain fitness (log2 ratio) -1 0 1at 3609.050 kb on + strandat 3609.336 kb on + strand, within DvMF_2857at 3609.366 kb on + strand, within DvMF_2857at 3609.366 kb on + strand, within DvMF_2857at 3609.371 kb on + strand, within DvMF_2857at 3609.550 kb on - strand, within DvMF_2857at 3609.925 kb on + strandat 3610.007 kb on + strandat 3610.136 kb on - strand, within DvMF_2858at 3610.219 kb on + strand, within DvMF_2858at 3610.414 kb on - strand, within DvMF_2858at 3610.469 kb on - strand, within DvMF_2858at 3610.504 kb on - strand, within DvMF_2858at 3610.728 kb on - strandat 3610.770 kb on - strandat 3611.437 kb on - strand, within DvMF_2859

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml
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3,609,050 + -0.3
3,609,336 + DvMF_2857 0.37 -0.9
3,609,366 + DvMF_2857 0.41 -0.6
3,609,366 + DvMF_2857 0.41 +1.3
3,609,371 + DvMF_2857 0.41 -0.4
3,609,550 - DvMF_2857 0.63 +0.4
3,609,925 + -0.3
3,610,007 + -0.4
3,610,136 - DvMF_2858 0.24 -0.9
3,610,219 + DvMF_2858 0.35 -0.4
3,610,414 - DvMF_2858 0.61 -0.3
3,610,469 - DvMF_2858 0.69 -1.0
3,610,504 - DvMF_2858 0.74 -0.6
3,610,728 - -0.9
3,610,770 - -0.0
3,611,437 - DvMF_2859 0.71 +1.5

Or see this region's nucleotide sequence