Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2684 and DvMF_2685 are separated by 104 nucleotides DvMF_2685 and DvMF_2686 are separated by 88 nucleotides
DvMF_2684: DvMF_2684 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,395,988 to 3,397,061
_2684
DvMF_2685: DvMF_2685 - extracellular solute-binding protein family 3 (RefSeq), at 3,397,166 to 3,398,032
_2685
DvMF_2686: DvMF_2686 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 3,398,121 to 3,399,071
_2686
Position (kb)
3397
3398
3399 Strain fitness (log2 ratio)
-2
-1
0
1 at 3396.266 kb on + strand, within DvMF_2684 at 3396.346 kb on + strand, within DvMF_2684 at 3396.356 kb on + strand, within DvMF_2684 at 3396.453 kb on + strand, within DvMF_2684 at 3396.456 kb on - strand, within DvMF_2684 at 3396.744 kb on + strand, within DvMF_2684 at 3396.861 kb on - strand, within DvMF_2684 at 3396.861 kb on - strand, within DvMF_2684 at 3396.948 kb on + strand, within DvMF_2684 at 3397.048 kb on + strand at 3397.459 kb on + strand, within DvMF_2685 at 3397.571 kb on - strand, within DvMF_2685 at 3397.697 kb on + strand, within DvMF_2685 at 3397.710 kb on - strand, within DvMF_2685 at 3398.254 kb on - strand, within DvMF_2686 at 3398.284 kb on + strand, within DvMF_2686 at 3398.399 kb on + strand, within DvMF_2686 at 3398.407 kb on - strand, within DvMF_2686 at 3398.407 kb on - strand, within DvMF_2686 at 3398.429 kb on - strand, within DvMF_2686 at 3398.496 kb on + strand, within DvMF_2686 at 3398.689 kb on - strand, within DvMF_2686 at 3398.802 kb on + strand, within DvMF_2686 at 3398.831 kb on + strand, within DvMF_2686 at 3398.839 kb on - strand, within DvMF_2686
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 3,396,266 + DvMF_2684 0.26 -0.3 3,396,346 + DvMF_2684 0.33 +0.2 3,396,356 + DvMF_2684 0.34 -1.2 3,396,453 + DvMF_2684 0.43 -1.5 3,396,456 - DvMF_2684 0.44 -0.8 3,396,744 + DvMF_2684 0.70 -0.5 3,396,861 - DvMF_2684 0.81 -0.4 3,396,861 - DvMF_2684 0.81 -0.9 3,396,948 + DvMF_2684 0.89 -0.7 3,397,048 + -0.1 3,397,459 + DvMF_2685 0.34 +0.8 3,397,571 - DvMF_2685 0.47 -0.7 3,397,697 + DvMF_2685 0.61 -1.0 3,397,710 - DvMF_2685 0.63 +0.2 3,398,254 - DvMF_2686 0.14 -0.1 3,398,284 + DvMF_2686 0.17 +0.1 3,398,399 + DvMF_2686 0.29 -0.1 3,398,407 - DvMF_2686 0.30 -0.4 3,398,407 - DvMF_2686 0.30 -1.1 3,398,429 - DvMF_2686 0.32 -0.3 3,398,496 + DvMF_2686 0.39 -0.2 3,398,689 - DvMF_2686 0.60 -0.5 3,398,802 + DvMF_2686 0.72 -2.2 3,398,831 + DvMF_2686 0.75 +0.8 3,398,839 - DvMF_2686 0.75 -0.7
Or see this region's nucleotide sequence