Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2558

Experiment: MoYLS4 with Vancomycin 0.5 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2557 and DvMF_2558 are separated by 632 nucleotidesDvMF_2558 and DvMF_2559 are separated by 519 nucleotides DvMF_2557: DvMF_2557 - hypothetical protein (RefSeq), at 3,231,147 to 3,232,502 _2557 DvMF_2558: DvMF_2558 - hypothetical protein (RefSeq), at 3,233,135 to 3,234,550 _2558 DvMF_2559: DvMF_2559 - hypothetical protein (RefSeq), at 3,235,070 to 3,235,828 _2559 Position (kb) 3233 3234 3235Strain fitness (log2 ratio) -1 0 1 2 3at 3232.858 kb on + strandat 3233.051 kb on + strandat 3233.066 kb on + strandat 3233.074 kb on - strandat 3233.076 kb on + strandat 3233.076 kb on + strandat 3233.076 kb on + strandat 3233.155 kb on + strandat 3233.400 kb on + strand, within DvMF_2558at 3233.444 kb on - strand, within DvMF_2558at 3233.574 kb on + strand, within DvMF_2558at 3233.579 kb on + strand, within DvMF_2558at 3233.905 kb on - strand, within DvMF_2558at 3234.079 kb on - strand, within DvMF_2558at 3234.090 kb on + strand, within DvMF_2558at 3234.330 kb on + strand, within DvMF_2558at 3234.416 kb on - strandat 3234.552 kb on - strandat 3234.775 kb on - strandat 3235.216 kb on - strand, within DvMF_2559at 3235.266 kb on - strand, within DvMF_2559at 3235.325 kb on + strand, within DvMF_2559at 3235.325 kb on + strand, within DvMF_2559at 3235.333 kb on - strand, within DvMF_2559at 3235.333 kb on - strand, within DvMF_2559at 3235.346 kb on - strand, within DvMF_2559at 3235.451 kb on - strand, within DvMF_2559

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml
remove
3,232,858 + -1.3
3,233,051 + -0.4
3,233,066 + +0.6
3,233,074 - -0.5
3,233,076 + -1.0
3,233,076 + -1.0
3,233,076 + -0.6
3,233,155 + +1.1
3,233,400 + DvMF_2558 0.19 -0.8
3,233,444 - DvMF_2558 0.22 +2.1
3,233,574 + DvMF_2558 0.31 +1.5
3,233,579 + DvMF_2558 0.31 +3.5
3,233,905 - DvMF_2558 0.54 +0.4
3,234,079 - DvMF_2558 0.67 +2.9
3,234,090 + DvMF_2558 0.67 +1.1
3,234,330 + DvMF_2558 0.84 -1.1
3,234,416 - -0.3
3,234,552 - +1.5
3,234,775 - -0.5
3,235,216 - DvMF_2559 0.19 -0.7
3,235,266 - DvMF_2559 0.26 -1.1
3,235,325 + DvMF_2559 0.34 -1.1
3,235,325 + DvMF_2559 0.34 -1.0
3,235,333 - DvMF_2559 0.35 -1.3
3,235,333 - DvMF_2559 0.35 -0.1
3,235,346 - DvMF_2559 0.36 +3.5
3,235,451 - DvMF_2559 0.50 -0.9

Or see this region's nucleotide sequence