Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2531 and DvMF_2532 are separated by 58 nucleotides DvMF_2532 and DvMF_2533 are separated by 323 nucleotides
DvMF_2531: DvMF_2531 - cytochrome bd-type quinol oxidase subunit 1-like protein (RefSeq), at 3,193,053 to 3,194,360
_2531
DvMF_2532: DvMF_2532 - cytochrome c class III (RefSeq), at 3,194,419 to 3,196,350
_2532
DvMF_2533: DvMF_2533 - formate dehydrogenase, alpha subunit (RefSeq), at 3,196,674 to 3,199,706
_2533
Position (kb)
3194
3195
3196
3197 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3193.492 kb on - strand, within DvMF_2531 at 3193.533 kb on - strand, within DvMF_2531 at 3193.801 kb on - strand, within DvMF_2531 at 3193.803 kb on - strand, within DvMF_2531 at 3193.828 kb on - strand, within DvMF_2531 at 3193.841 kb on - strand, within DvMF_2531 at 3193.915 kb on - strand, within DvMF_2531 at 3193.955 kb on + strand, within DvMF_2531 at 3194.238 kb on - strand at 3194.564 kb on - strand at 3194.815 kb on + strand, within DvMF_2532 at 3194.815 kb on + strand, within DvMF_2532 at 3194.815 kb on + strand, within DvMF_2532 at 3194.823 kb on - strand, within DvMF_2532 at 3194.949 kb on + strand, within DvMF_2532 at 3195.079 kb on - strand, within DvMF_2532 at 3195.080 kb on - strand, within DvMF_2532 at 3195.156 kb on - strand, within DvMF_2532 at 3195.261 kb on - strand, within DvMF_2532 at 3195.277 kb on + strand, within DvMF_2532 at 3195.307 kb on + strand, within DvMF_2532 at 3195.529 kb on + strand, within DvMF_2532 at 3195.537 kb on - strand, within DvMF_2532 at 3196.009 kb on - strand, within DvMF_2532 at 3196.035 kb on + strand, within DvMF_2532 at 3196.152 kb on - strand, within DvMF_2532 at 3196.296 kb on + strand at 3196.361 kb on - strand at 3196.445 kb on - strand at 3196.761 kb on - strand at 3196.761 kb on - strand at 3196.821 kb on - strand at 3196.853 kb on + strand at 3197.160 kb on - strand, within DvMF_2533 at 3197.193 kb on + strand, within DvMF_2533
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 3,193,492 - DvMF_2531 0.34 -1.1 3,193,533 - DvMF_2531 0.37 -0.5 3,193,801 - DvMF_2531 0.57 -0.7 3,193,803 - DvMF_2531 0.57 -0.9 3,193,828 - DvMF_2531 0.59 +2.2 3,193,841 - DvMF_2531 0.60 +0.7 3,193,915 - DvMF_2531 0.66 -1.7 3,193,955 + DvMF_2531 0.69 -1.1 3,194,238 - -0.1 3,194,564 - -0.8 3,194,815 + DvMF_2532 0.20 -1.0 3,194,815 + DvMF_2532 0.20 -2.8 3,194,815 + DvMF_2532 0.20 -1.9 3,194,823 - DvMF_2532 0.21 -1.0 3,194,949 + DvMF_2532 0.27 -0.6 3,195,079 - DvMF_2532 0.34 +0.1 3,195,080 - DvMF_2532 0.34 -1.7 3,195,156 - DvMF_2532 0.38 -0.8 3,195,261 - DvMF_2532 0.44 -0.9 3,195,277 + DvMF_2532 0.44 -0.6 3,195,307 + DvMF_2532 0.46 -0.5 3,195,529 + DvMF_2532 0.57 +0.2 3,195,537 - DvMF_2532 0.58 -0.8 3,196,009 - DvMF_2532 0.82 -0.7 3,196,035 + DvMF_2532 0.84 -0.8 3,196,152 - DvMF_2532 0.90 -0.8 3,196,296 + -0.5 3,196,361 - +0.4 3,196,445 - -0.2 3,196,761 - -0.7 3,196,761 - -0.4 3,196,821 - -0.7 3,196,853 + -1.4 3,197,160 - DvMF_2533 0.16 -0.6 3,197,193 + DvMF_2533 0.17 -0.7
Or see this region's nucleotide sequence