Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2324

Experiment: MoYLS4 with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2323 and DvMF_2324 are separated by 114 nucleotidesDvMF_2324 and DvMF_2325 are separated by 121 nucleotides DvMF_2323: DvMF_2323 - hypothetical protein (RefSeq), at 2,924,836 to 2,925,915 _2323 DvMF_2324: DvMF_2324 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 2,926,030 to 2,929,518 _2324 DvMF_2325: DvMF_2325 - ectoine/hydroxyectoine ABC transporter solute-binding protein (RefSeq), at 2,929,640 to 2,930,539 _2325 Position (kb) 2926 2927 2928 2929 2930Strain fitness (log2 ratio) -2 -1 0 1 2at 2925.127 kb on - strand, within DvMF_2323at 2925.255 kb on + strand, within DvMF_2323at 2925.343 kb on + strand, within DvMF_2323at 2925.359 kb on + strand, within DvMF_2323at 2925.537 kb on - strand, within DvMF_2323at 2925.600 kb on - strand, within DvMF_2323at 2925.758 kb on + strand, within DvMF_2323at 2925.962 kb on + strandat 2925.997 kb on + strandat 2926.005 kb on - strandat 2926.050 kb on - strandat 2926.246 kb on + strandat 2926.290 kb on - strandat 2926.290 kb on - strandat 2926.306 kb on + strandat 2926.570 kb on - strand, within DvMF_2324at 2926.700 kb on - strand, within DvMF_2324at 2926.831 kb on + strand, within DvMF_2324at 2926.839 kb on - strand, within DvMF_2324at 2927.082 kb on - strand, within DvMF_2324at 2927.342 kb on - strand, within DvMF_2324at 2927.521 kb on - strand, within DvMF_2324at 2927.625 kb on + strand, within DvMF_2324at 2927.692 kb on + strand, within DvMF_2324at 2927.724 kb on + strand, within DvMF_2324at 2927.826 kb on - strand, within DvMF_2324at 2928.046 kb on + strand, within DvMF_2324at 2928.093 kb on - strand, within DvMF_2324at 2928.217 kb on - strand, within DvMF_2324at 2928.247 kb on - strand, within DvMF_2324at 2928.501 kb on - strand, within DvMF_2324at 2928.800 kb on - strand, within DvMF_2324at 2928.895 kb on - strand, within DvMF_2324at 2928.946 kb on + strand, within DvMF_2324at 2928.946 kb on + strand, within DvMF_2324at 2928.954 kb on - strand, within DvMF_2324at 2929.222 kb on + strandat 2929.230 kb on - strandat 2929.429 kb on + strandat 2929.445 kb on + strandat 2929.527 kb on - strandat 2929.645 kb on + strandat 2929.705 kb on + strandat 2929.916 kb on + strand, within DvMF_2325at 2929.939 kb on + strand, within DvMF_2325at 2929.947 kb on - strand, within DvMF_2325at 2930.009 kb on - strand, within DvMF_2325at 2930.068 kb on + strand, within DvMF_2325at 2930.076 kb on - strand, within DvMF_2325at 2930.284 kb on - strand, within DvMF_2325at 2930.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml
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2,925,127 - DvMF_2323 0.27 -1.3
2,925,255 + DvMF_2323 0.39 -0.2
2,925,343 + DvMF_2323 0.47 -1.2
2,925,359 + DvMF_2323 0.48 -1.3
2,925,537 - DvMF_2323 0.65 -0.5
2,925,600 - DvMF_2323 0.71 -1.5
2,925,758 + DvMF_2323 0.85 -0.5
2,925,962 + -1.2
2,925,997 + -0.0
2,926,005 - -0.1
2,926,050 - -0.8
2,926,246 + -1.6
2,926,290 - -1.2
2,926,290 - -1.6
2,926,306 + -0.7
2,926,570 - DvMF_2324 0.15 -0.5
2,926,700 - DvMF_2324 0.19 -0.9
2,926,831 + DvMF_2324 0.23 +2.1
2,926,839 - DvMF_2324 0.23 -1.0
2,927,082 - DvMF_2324 0.30 -1.1
2,927,342 - DvMF_2324 0.38 -2.0
2,927,521 - DvMF_2324 0.43 -0.4
2,927,625 + DvMF_2324 0.46 -0.3
2,927,692 + DvMF_2324 0.48 -1.0
2,927,724 + DvMF_2324 0.49 +0.7
2,927,826 - DvMF_2324 0.51 -2.1
2,928,046 + DvMF_2324 0.58 -0.6
2,928,093 - DvMF_2324 0.59 +0.0
2,928,217 - DvMF_2324 0.63 -1.0
2,928,247 - DvMF_2324 0.64 -0.6
2,928,501 - DvMF_2324 0.71 -0.3
2,928,800 - DvMF_2324 0.79 -0.2
2,928,895 - DvMF_2324 0.82 -0.6
2,928,946 + DvMF_2324 0.84 +0.3
2,928,946 + DvMF_2324 0.84 -0.8
2,928,954 - DvMF_2324 0.84 -0.4
2,929,222 + -0.8
2,929,230 - -0.3
2,929,429 + -1.4
2,929,445 + -0.3
2,929,527 - -1.1
2,929,645 + +1.0
2,929,705 + -0.8
2,929,916 + DvMF_2325 0.31 +2.3
2,929,939 + DvMF_2325 0.33 -0.7
2,929,947 - DvMF_2325 0.34 -0.0
2,930,009 - DvMF_2325 0.41 -0.6
2,930,068 + DvMF_2325 0.48 -0.9
2,930,076 - DvMF_2325 0.48 -0.7
2,930,284 - DvMF_2325 0.72 -0.7
2,930,489 - -1.0

Or see this region's nucleotide sequence