Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2283

Experiment: MoYLS4 with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2282 and DvMF_2283 are separated by 231 nucleotidesDvMF_2283 and flgB are separated by 659 nucleotides DvMF_2282: DvMF_2282 - permease (RefSeq), at 2,870,591 to 2,871,583 _2282 DvMF_2283: DvMF_2283 - TPR repeat-containing protein (RefSeq), at 2,871,815 to 2,872,375 _2283 DvMF_2284: flgB - flagellar basal body rod protein FlgB (RefSeq), at 2,873,035 to 2,873,445 flgB Position (kb) 2871 2872 2873Strain fitness (log2 ratio) -2 -1 0 1 2at 2870.962 kb on - strand, within DvMF_2282at 2871.156 kb on + strand, within DvMF_2282at 2871.166 kb on + strand, within DvMF_2282at 2871.169 kb on - strand, within DvMF_2282at 2871.169 kb on - strand, within DvMF_2282at 2871.179 kb on - strand, within DvMF_2282at 2871.239 kb on + strand, within DvMF_2282at 2871.385 kb on - strand, within DvMF_2282at 2871.636 kb on + strandat 2871.636 kb on + strandat 2871.636 kb on + strandat 2871.644 kb on - strandat 2872.200 kb on + strand, within DvMF_2283at 2872.406 kb on + strandat 2872.495 kb on - strandat 2872.495 kb on - strandat 2872.559 kb on + strandat 2872.695 kb on + strandat 2872.709 kb on + strandat 2873.064 kb on - strandat 2873.236 kb on + strand, within flgB

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml
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2,870,962 - DvMF_2282 0.37 +0.8
2,871,156 + DvMF_2282 0.57 -0.7
2,871,166 + DvMF_2282 0.58 +0.7
2,871,169 - DvMF_2282 0.58 -0.4
2,871,169 - DvMF_2282 0.58 -0.2
2,871,179 - DvMF_2282 0.59 -0.4
2,871,239 + DvMF_2282 0.65 -0.6
2,871,385 - DvMF_2282 0.80 -1.2
2,871,636 + -0.9
2,871,636 + -0.9
2,871,636 + -0.6
2,871,644 - -1.1
2,872,200 + DvMF_2283 0.69 +0.1
2,872,406 + -1.2
2,872,495 - -0.6
2,872,495 - -2.7
2,872,559 + -0.2
2,872,695 + -0.8
2,872,709 + +0.0
2,873,064 - +1.2
2,873,236 + flgB DvMF_2284 0.49 +2.2

Or see this region's nucleotide sequence