Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2183 and DvMF_2184 are separated by 228 nucleotides DvMF_2184 and DvMF_2185 are separated by 296 nucleotides
DvMF_2183: DvMF_2183 - malate synthase G (RefSeq), at 2,723,923 to 2,726,118
_2183
DvMF_2184: DvMF_2184 - hypothetical protein (RefSeq), at 2,726,347 to 2,727,660
_2184
DvMF_2185: DvMF_2185 - ThiJ/PfpI domain protein (RefSeq), at 2,727,957 to 2,728,697
_2185
Position (kb)
2726
2727
2728 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2725.598 kb on - strand, within DvMF_2183 at 2725.615 kb on + strand, within DvMF_2183 at 2725.648 kb on + strand, within DvMF_2183 at 2725.756 kb on + strand, within DvMF_2183 at 2725.757 kb on - strand, within DvMF_2183 at 2725.766 kb on + strand, within DvMF_2183 at 2725.774 kb on - strand, within DvMF_2183 at 2725.795 kb on - strand, within DvMF_2183 at 2725.803 kb on - strand, within DvMF_2183 at 2725.811 kb on + strand, within DvMF_2183 at 2726.004 kb on + strand at 2726.057 kb on + strand at 2726.078 kb on + strand at 2726.084 kb on + strand at 2726.112 kb on + strand at 2726.263 kb on + strand at 2726.289 kb on + strand at 2726.408 kb on + strand at 2726.410 kb on - strand at 2726.450 kb on - strand at 2726.519 kb on + strand, within DvMF_2184 at 2726.539 kb on - strand, within DvMF_2184 at 2726.573 kb on - strand, within DvMF_2184 at 2726.846 kb on - strand, within DvMF_2184 at 2727.031 kb on - strand, within DvMF_2184 at 2727.120 kb on - strand, within DvMF_2184 at 2727.235 kb on + strand, within DvMF_2184 at 2727.243 kb on - strand, within DvMF_2184 at 2727.287 kb on + strand, within DvMF_2184 at 2727.351 kb on + strand, within DvMF_2184 at 2727.351 kb on + strand, within DvMF_2184 at 2727.655 kb on + strand at 2727.679 kb on + strand at 2727.737 kb on - strand at 2728.013 kb on - strand at 2728.118 kb on + strand, within DvMF_2185 at 2728.148 kb on - strand, within DvMF_2185 at 2728.153 kb on - strand, within DvMF_2185
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 2,725,598 - DvMF_2183 0.76 -1.9 2,725,615 + DvMF_2183 0.77 -1.5 2,725,648 + DvMF_2183 0.79 -0.8 2,725,756 + DvMF_2183 0.83 -2.1 2,725,757 - DvMF_2183 0.84 +0.6 2,725,766 + DvMF_2183 0.84 -1.1 2,725,774 - DvMF_2183 0.84 -0.7 2,725,795 - DvMF_2183 0.85 -0.7 2,725,803 - DvMF_2183 0.86 -0.3 2,725,811 + DvMF_2183 0.86 +0.2 2,726,004 + -0.3 2,726,057 + -1.1 2,726,078 + -0.5 2,726,084 + -0.3 2,726,112 + +0.5 2,726,263 + -0.7 2,726,289 + -0.9 2,726,408 + -0.3 2,726,410 - -1.2 2,726,450 - -1.3 2,726,519 + DvMF_2184 0.13 -0.8 2,726,539 - DvMF_2184 0.15 -1.3 2,726,573 - DvMF_2184 0.17 -0.8 2,726,846 - DvMF_2184 0.38 -0.5 2,727,031 - DvMF_2184 0.52 +0.9 2,727,120 - DvMF_2184 0.59 -0.4 2,727,235 + DvMF_2184 0.68 -0.2 2,727,243 - DvMF_2184 0.68 -0.5 2,727,287 + DvMF_2184 0.72 -0.4 2,727,351 + DvMF_2184 0.76 -0.5 2,727,351 + DvMF_2184 0.76 -0.6 2,727,655 + +1.9 2,727,679 + -0.4 2,727,737 - -0.1 2,728,013 - +0.5 2,728,118 + DvMF_2185 0.22 -0.5 2,728,148 - DvMF_2185 0.26 +0.1 2,728,153 - DvMF_2185 0.26 +1.0
Or see this region's nucleotide sequence